Wall clock time and date at job start Tue Mar 31 2020 05:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46724 * 2 1 4 4 H 1.08999 * 109.47513 * 305.76748 * 3 2 1 5 5 N 1.46900 * 109.47442 * 65.77090 * 3 2 1 6 6 C 1.46892 * 110.99949 * 259.72783 * 5 3 2 7 7 H 1.09001 * 109.47426 * 20.30510 * 6 5 3 8 8 C 1.50701 * 109.46962 * 140.30122 * 6 5 3 9 9 H 1.07996 * 120.00014 * 0.02562 * 8 6 5 10 10 C 1.37875 * 119.99927 * 179.97438 * 8 6 5 11 11 N 1.31511 * 120.00329 * 0.02562 * 10 8 6 12 12 Si 1.86801 * 120.00071 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47345 * 89.99756 * 12 10 8 14 14 H 1.48499 * 109.47231 * 210.00055 * 12 10 8 15 15 H 1.48503 * 109.46924 * 329.99908 * 12 10 8 16 16 C 1.53004 * 109.47311 * 260.30144 * 6 5 3 17 17 C 1.52998 * 109.46765 * 65.61266 * 16 6 5 18 18 C 1.50707 * 109.46849 * 185.77065 * 3 2 1 19 19 C 1.38258 * 119.99481 * 280.23038 * 18 3 2 20 20 C 1.38222 * 120.02838 * 180.23146 * 19 18 3 21 21 C 1.38231 * 120.00975 * 359.79128 * 20 19 18 22 22 C 1.38329 * 119.99152 * 359.97438 * 21 20 19 23 23 Cl 1.73596 * 120.01746 * 180.02562 * 22 21 20 24 24 C 1.38192 * 119.98889 * 99.99920 * 18 3 2 25 25 H 1.08992 * 109.47231 * 62.51416 * 1 2 3 26 26 H 1.09005 * 109.46784 * 182.50767 * 1 2 3 27 27 H 1.09000 * 109.47251 * 302.50624 * 1 2 3 28 28 H 1.08996 * 109.46991 * 239.99716 * 2 1 3 29 29 H 1.09003 * 109.46807 * 119.99858 * 2 1 3 30 30 H 1.00902 * 110.99982 * 135.77322 * 5 3 2 31 31 H 0.97000 * 120.00335 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.47144 * 185.61578 * 16 6 5 33 33 H 1.08997 * 109.46940 * 305.61588 * 16 6 5 34 34 H 1.09007 * 109.46864 * 178.10180 * 17 16 6 35 35 H 1.08993 * 109.47765 * 298.10160 * 17 16 6 36 36 H 1.09002 * 109.46936 * 58.10653 * 17 16 6 37 37 H 1.08008 * 119.98798 * 359.97438 * 19 18 3 38 38 H 1.07997 * 119.99690 * 179.76557 * 20 19 18 39 39 H 1.08006 * 120.00618 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.01204 * 0.02562 * 24 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5947 1.9853 -0.8338 5 7 1.6673 2.0937 1.2630 6 6 0.4819 2.9433 1.0874 7 1 -0.0581 2.6333 0.1928 8 6 -0.4168 2.8063 2.2894 9 1 -0.1353 2.1537 3.1025 10 6 -1.5978 3.5150 2.3514 11 7 -1.9404 4.3101 1.3615 12 14 -2.7115 3.3457 3.8416 13 1 -2.3371 4.3622 4.8574 14 1 -4.1233 3.5532 3.4306 15 1 -2.5593 1.9871 4.4214 16 6 0.9177 4.4026 0.9401 17 6 1.7139 4.5686 -0.3558 18 6 3.5402 1.4449 -0.1429 19 6 4.3396 1.1940 0.9569 20 6 5.7158 1.2008 0.8277 21 6 6.2935 1.4542 -0.4023 22 6 5.4941 1.7006 -1.5041 23 17 6.2188 2.0183 -3.0492 24 6 4.1164 1.6932 -1.3741 25 1 -0.3633 0.4743 -0.9116 26 1 -0.3633 -1.0267 0.0450 27 1 -0.3634 0.5523 0.8667 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.4396 2.6235 1.6383 31 1 -2.7712 4.8089 1.4053 32 1 0.0366 5.0436 0.9100 33 1 1.5420 4.6827 1.7885 34 1 1.9955 5.6146 -0.4777 35 1 2.6124 3.9533 -0.3116 36 1 1.1009 4.2565 -1.2013 37 1 3.8888 0.9967 1.9183 38 1 6.3398 1.0085 1.6878 39 1 7.3688 1.4599 -0.5031 40 1 3.4918 1.8860 -2.2339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:45 Heat of formation + Delta-G solvation = 0.366674 kcal Electronic energy + Delta-G solvation = -20354.659432 eV Core-core repulsion = 17387.310104 eV Total energy + Delta-G solvation = -2967.349328 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.63443 -37.17424 -36.27656 -33.88453 -31.76367 -30.95461 -30.65065 -29.52257 -26.89866 -24.70226 -22.75662 -22.54964 -21.96316 -19.85965 -19.66751 -17.14027 -16.18629 -15.66439 -15.38998 -14.68422 -14.57827 -13.99323 -13.74593 -13.52573 -13.31132 -13.13022 -12.63595 -12.43659 -12.08328 -11.88426 -11.59263 -11.40664 -11.27576 -11.20088 -11.07296 -10.88308 -10.67366 -10.62988 -10.47646 -10.19883 -9.93105 -9.73766 -9.70975 -9.04336 -8.80234 -8.55780 -8.32109 -7.24480 -5.97185 -4.00176 1.22563 1.31602 2.11567 3.32634 3.39758 3.43565 3.69260 4.44305 4.75476 4.86389 5.13863 5.15694 5.32457 5.38225 5.48436 5.61012 5.76941 5.83926 5.93858 6.06763 6.13067 6.16569 6.23575 6.27917 6.40565 6.41801 6.47855 6.56340 6.63612 6.79382 6.84419 6.88973 6.97417 7.20678 7.27690 7.40395 7.76483 7.91268 8.30645 8.54950 8.59484 9.07805 9.64855 11.08635 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025811 B = 0.004420 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.544125 B = 6332.944672 C = 6565.047638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.097 4.097 3 C 0.123 3.877 4 H 0.057 0.943 5 N -0.673 5.673 6 C 0.218 3.782 7 H 0.036 0.964 8 C -0.489 4.489 9 H 0.063 0.937 10 C 0.056 3.944 11 N -0.896 5.896 12 Si 0.893 3.107 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.274 1.274 16 C -0.149 4.149 17 C -0.149 4.149 18 C -0.065 4.065 19 C -0.101 4.101 20 C -0.109 4.109 21 C -0.122 4.122 22 C -0.034 4.034 23 Cl -0.082 7.082 24 C -0.108 4.108 25 H 0.041 0.959 26 H 0.038 0.962 27 H 0.092 0.908 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.326 0.674 31 H 0.259 0.741 32 H 0.100 0.900 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.035 0.965 36 H 0.042 0.958 37 H 0.139 0.861 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.526 -5.472 -4.900 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.136 4.136 3 C 0.013 3.987 4 H 0.075 0.925 5 N -0.303 5.303 6 C 0.110 3.890 7 H 0.054 0.946 8 C -0.528 4.528 9 H 0.081 0.919 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.721 3.279 13 H -0.210 1.210 14 H -0.215 1.215 15 H -0.199 1.199 16 C -0.188 4.188 17 C -0.207 4.207 18 C -0.065 4.065 19 C -0.119 4.119 20 C -0.127 4.127 21 C -0.141 4.141 22 C -0.061 4.061 23 Cl -0.053 7.053 24 C -0.127 4.127 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.111 0.889 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.143 0.857 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 13.052 -5.866 -4.861 15.113 hybrid contribution -0.131 0.896 0.016 0.905 sum 12.921 -4.971 -4.846 14.668 Atomic orbital electron populations 1.21831 0.95018 1.00525 1.03756 1.21467 0.96828 0.94920 1.00373 1.20702 0.87163 0.96587 0.94256 0.92472 1.60998 1.08638 1.37508 1.23192 1.19353 0.86143 0.86118 0.97346 0.94643 1.21188 1.03046 1.24624 1.03949 0.91921 1.24941 0.97873 0.95494 0.96176 1.69865 1.23691 1.28680 1.31378 0.86579 0.79807 0.78409 0.83067 1.20959 1.21512 1.19914 1.22258 1.00205 1.03189 0.93193 1.21916 0.99350 0.99257 1.00161 1.20398 0.97183 0.96659 0.92309 1.21273 0.93024 0.98095 0.99557 1.21116 0.95157 0.99770 0.96695 1.20970 0.99719 1.01636 0.91772 1.20867 0.93235 1.05194 0.86772 1.98352 1.83538 1.94224 1.29197 1.20990 0.92512 1.00870 0.98326 0.93970 0.94325 0.88879 0.93655 0.91853 0.85651 0.93129 0.88214 0.94793 0.94792 0.94581 0.93866 0.84351 0.85312 0.85493 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.99 37.16 0.33 -2.39 16 2 C -0.10 -1.57 5.58 -26.73 -0.15 -1.72 16 3 C 0.12 2.06 1.32 -68.86 -0.09 1.97 16 4 H 0.06 1.04 6.27 -51.93 -0.33 0.72 16 5 N -0.67 -12.94 5.26 -102.17 -0.54 -13.48 16 6 C 0.22 5.02 1.07 -68.87 -0.07 4.95 16 7 H 0.04 0.90 6.43 -51.93 -0.33 0.57 16 8 C -0.49 -12.72 8.15 -34.44 -0.28 -13.00 16 9 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 10 C 0.06 1.48 5.29 -17.82 -0.09 1.38 16 11 N -0.90 -24.72 11.29 55.43 0.63 -24.10 16 12 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 C -0.15 -3.37 5.11 -26.73 -0.14 -3.51 16 17 C -0.15 -2.89 8.82 37.16 0.33 -2.56 16 18 C -0.06 -0.94 4.04 -104.63 -0.42 -1.36 16 19 C -0.10 -1.34 8.77 -39.58 -0.35 -1.69 16 20 C -0.11 -1.24 10.05 -39.59 -0.40 -1.64 16 21 C -0.12 -1.41 9.83 -39.55 -0.39 -1.80 16 22 C -0.03 -0.44 6.32 -39.49 -0.25 -0.69 16 23 Cl -0.08 -0.97 28.96 -51.86 -1.50 -2.47 16 24 C -0.11 -1.49 9.45 -39.54 -0.37 -1.87 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 1.97 5.99 -51.93 -0.31 1.66 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.33 6.08 6.63 -39.29 -0.26 5.82 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.10 2.58 5.94 -51.93 -0.31 2.27 16 33 H 0.03 0.76 8.02 -51.93 -0.42 0.34 16 34 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 35 H 0.04 0.64 6.20 -51.93 -0.32 0.32 16 36 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 37 H 0.14 1.83 7.56 -52.48 -0.40 1.43 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 40 H 0.13 1.74 8.04 -52.49 -0.42 1.31 16 LS Contribution 331.27 15.07 4.99 4.99 Total: -1.00 -26.19 331.27 -9.81 -36.00 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.02 Total: 7.05 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -2.34 Total: -23.92 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.09 Total: -37.58 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -26.19 -9.81 -36.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.364 kcal (2) G-P(sol) polarization free energy of solvation -26.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds