Wall clock time and date at job start Tue Mar 31 2020 05:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46724 * 2 1 4 4 H 1.08999 * 109.47513 * 305.76748 * 3 2 1 5 5 N 1.46900 * 109.47442 * 65.77090 * 3 2 1 6 6 C 1.46892 * 110.99949 * 259.72783 * 5 3 2 7 7 H 1.09001 * 109.47426 * 20.30510 * 6 5 3 8 8 C 1.50701 * 109.46962 * 140.30122 * 6 5 3 9 9 H 1.07996 * 120.00014 * 0.02562 * 8 6 5 10 10 C 1.37875 * 119.99927 * 179.97438 * 8 6 5 11 11 N 1.31511 * 120.00329 * 0.02562 * 10 8 6 12 12 Si 1.86801 * 120.00071 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47345 * 89.99756 * 12 10 8 14 14 H 1.48499 * 109.47231 * 210.00055 * 12 10 8 15 15 H 1.48503 * 109.46924 * 329.99908 * 12 10 8 16 16 C 1.53004 * 109.47311 * 260.30144 * 6 5 3 17 17 C 1.52998 * 109.46765 * 65.61266 * 16 6 5 18 18 C 1.50707 * 109.46849 * 185.77065 * 3 2 1 19 19 C 1.38258 * 119.99481 * 280.23038 * 18 3 2 20 20 C 1.38222 * 120.02838 * 180.23146 * 19 18 3 21 21 C 1.38231 * 120.00975 * 359.79128 * 20 19 18 22 22 C 1.38329 * 119.99152 * 359.97438 * 21 20 19 23 23 Cl 1.73596 * 120.01746 * 180.02562 * 22 21 20 24 24 C 1.38192 * 119.98889 * 99.99920 * 18 3 2 25 25 H 1.08992 * 109.47231 * 62.51416 * 1 2 3 26 26 H 1.09005 * 109.46784 * 182.50767 * 1 2 3 27 27 H 1.09000 * 109.47251 * 302.50624 * 1 2 3 28 28 H 1.08996 * 109.46991 * 239.99716 * 2 1 3 29 29 H 1.09003 * 109.46807 * 119.99858 * 2 1 3 30 30 H 1.00902 * 110.99982 * 135.77322 * 5 3 2 31 31 H 0.97000 * 120.00335 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.47144 * 185.61578 * 16 6 5 33 33 H 1.08997 * 109.46940 * 305.61588 * 16 6 5 34 34 H 1.09007 * 109.46864 * 178.10180 * 17 16 6 35 35 H 1.08993 * 109.47765 * 298.10160 * 17 16 6 36 36 H 1.09002 * 109.46936 * 58.10653 * 17 16 6 37 37 H 1.08008 * 119.98798 * 359.97438 * 19 18 3 38 38 H 1.07997 * 119.99690 * 179.76557 * 20 19 18 39 39 H 1.08006 * 120.00618 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.01204 * 0.02562 * 24 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5947 1.9853 -0.8338 5 7 1.6673 2.0937 1.2630 6 6 0.4819 2.9433 1.0874 7 1 -0.0581 2.6333 0.1928 8 6 -0.4168 2.8063 2.2894 9 1 -0.1353 2.1537 3.1025 10 6 -1.5978 3.5150 2.3514 11 7 -1.9404 4.3101 1.3615 12 14 -2.7115 3.3457 3.8416 13 1 -2.3371 4.3622 4.8574 14 1 -4.1233 3.5532 3.4306 15 1 -2.5593 1.9871 4.4214 16 6 0.9177 4.4026 0.9401 17 6 1.7139 4.5686 -0.3558 18 6 3.5402 1.4449 -0.1429 19 6 4.3396 1.1940 0.9569 20 6 5.7158 1.2008 0.8277 21 6 6.2935 1.4542 -0.4023 22 6 5.4941 1.7006 -1.5041 23 17 6.2188 2.0183 -3.0492 24 6 4.1164 1.6932 -1.3741 25 1 -0.3633 0.4743 -0.9116 26 1 -0.3633 -1.0267 0.0450 27 1 -0.3634 0.5523 0.8667 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.4396 2.6235 1.6383 31 1 -2.7712 4.8089 1.4053 32 1 0.0366 5.0436 0.9100 33 1 1.5420 4.6827 1.7885 34 1 1.9955 5.6146 -0.4777 35 1 2.6124 3.9533 -0.3116 36 1 1.1009 4.2565 -1.2013 37 1 3.8888 0.9967 1.9183 38 1 6.3398 1.0085 1.6878 39 1 7.3688 1.4599 -0.5031 40 1 3.4918 1.8860 -2.2339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:44 Heat of formation + Delta-G solvation = -11.911489 kcal Electronic energy + Delta-G solvation = -20355.191853 eV Core-core repulsion = 17387.310104 eV Total energy + Delta-G solvation = -2967.881749 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.74299 -38.55176 -37.33023 -35.49842 -33.64353 -32.06829 -31.78016 -31.00947 -28.61496 -26.23057 -24.42708 -23.67409 -23.10493 -21.53079 -21.09427 -18.49204 -17.86026 -16.99329 -16.56887 -16.34825 -15.81061 -15.38893 -15.07207 -14.92426 -14.59210 -14.49209 -14.10081 -13.93480 -13.61299 -13.20736 -13.11707 -12.90382 -12.75141 -12.54324 -12.36182 -12.33264 -12.20524 -12.04787 -11.89408 -11.85332 -11.56834 -11.45786 -11.34097 -10.87788 -10.36131 -9.82176 -9.58310 -8.87105 -8.00824 -6.09889 0.23434 0.33217 1.16211 1.44272 1.46383 1.55655 2.48536 2.70244 3.26097 3.59297 3.73879 3.95218 4.19906 4.33578 4.34546 4.44205 4.46080 4.50069 4.53522 4.60690 4.71117 4.82273 4.88204 4.99509 5.06903 5.13906 5.18368 5.20166 5.26882 5.36191 5.44228 5.45949 5.54007 5.67582 5.74562 5.80990 5.89664 5.95104 6.41739 6.75468 6.93441 7.04831 7.58963 9.02897 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025811 B = 0.004420 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.544125 B = 6332.944672 C = 6565.047638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C 0.129 3.871 4 H 0.039 0.961 5 N -0.670 5.670 6 C 0.230 3.770 7 H 0.007 0.993 8 C -0.498 4.498 9 H 0.053 0.947 10 C 0.011 3.989 11 N -0.921 5.921 12 Si 0.949 3.051 13 H -0.280 1.280 14 H -0.289 1.289 15 H -0.271 1.271 16 C -0.144 4.144 17 C -0.136 4.136 18 C -0.077 4.077 19 C -0.108 4.108 20 C -0.100 4.100 21 C -0.116 4.116 22 C -0.041 4.041 23 Cl -0.075 7.075 24 C -0.117 4.117 25 H 0.033 0.967 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.330 0.670 31 H 0.257 0.743 32 H 0.066 0.934 33 H 0.032 0.968 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.035 0.965 37 H 0.136 0.864 38 H 0.160 0.840 39 H 0.152 0.848 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.704 -6.243 -4.620 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.130 4.130 3 C 0.019 3.981 4 H 0.057 0.943 5 N -0.301 5.301 6 C 0.122 3.878 7 H 0.025 0.975 8 C -0.537 4.537 9 H 0.071 0.929 10 C -0.187 4.187 11 N -0.562 5.562 12 Si 0.776 3.224 13 H -0.206 1.206 14 H -0.215 1.215 15 H -0.195 1.195 16 C -0.184 4.184 17 C -0.193 4.193 18 C -0.078 4.078 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.135 4.135 22 C -0.068 4.068 23 Cl -0.046 7.046 24 C -0.137 4.137 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.154 0.846 38 H 0.177 0.823 39 H 0.170 0.830 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.246 -6.647 -4.581 17.251 hybrid contribution -0.738 1.096 -0.104 1.326 sum 14.508 -5.551 -4.685 16.224 Atomic orbital electron populations 1.21738 0.96461 1.00923 1.01499 1.21432 0.95388 0.94771 1.01452 1.20569 0.89142 0.96272 0.92131 0.94304 1.60849 1.07739 1.36524 1.24961 1.19014 0.87024 0.86908 0.94891 0.97489 1.21472 1.03771 1.23979 1.04508 0.92861 1.25598 0.99220 0.95453 0.98439 1.69997 1.23931 1.29453 1.32861 0.85696 0.78040 0.78379 0.80298 1.20576 1.21527 1.19550 1.22097 0.99236 1.02099 0.94925 1.21751 0.99173 1.00483 0.97896 1.20118 0.95568 0.98812 0.93334 1.21335 0.93997 0.98340 0.98948 1.21423 0.94486 0.98190 0.97713 1.21313 1.00946 1.00019 0.91200 1.20978 0.92985 1.05221 0.87596 1.98356 1.83250 1.94171 1.28847 1.20976 0.93253 1.01447 0.97983 0.94804 0.92419 0.92615 0.91636 0.91503 0.85192 0.93378 0.91517 0.94924 0.93341 0.93057 0.94601 0.84575 0.82267 0.83013 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 8.99 71.98 0.65 -4.69 16 2 C -0.09 -2.90 5.58 30.59 0.17 -2.73 16 3 C 0.13 4.29 1.32 44.17 0.06 4.35 16 4 H 0.04 1.44 6.27 -2.39 -0.01 1.43 16 5 N -0.67 -25.96 5.26 -477.16 -2.51 -28.47 16 6 C 0.23 10.89 1.07 44.17 0.05 10.94 16 7 H 0.01 0.38 6.43 -2.39 -0.02 0.37 16 8 C -0.50 -26.53 8.15 25.60 0.21 -26.32 16 9 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 10 C 0.01 0.57 5.29 84.65 0.45 1.02 16 11 N -0.92 -52.27 11.29 21.45 0.24 -52.03 16 12 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 14 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 C -0.14 -6.63 5.11 30.59 0.16 -6.48 16 17 C -0.14 -5.21 8.82 71.98 0.63 -4.58 16 18 C -0.08 -2.15 4.04 -19.87 -0.08 -2.23 16 19 C -0.11 -2.62 8.77 22.27 0.20 -2.43 16 20 C -0.10 -1.93 10.05 22.26 0.22 -1.71 16 21 C -0.12 -2.27 9.83 22.29 0.22 -2.05 16 22 C -0.04 -0.96 6.32 22.33 0.14 -0.82 16 23 Cl -0.08 -1.62 28.96 -2.72 -0.08 -1.70 16 24 C -0.12 -3.08 9.45 22.29 0.21 -2.87 16 25 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.05 2.42 5.99 -2.39 -0.01 2.41 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.33 12.19 6.63 -89.69 -0.59 11.59 16 31 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 32 H 0.07 3.55 5.94 -2.39 -0.01 3.54 16 33 H 0.03 1.47 8.02 -2.39 -0.02 1.45 16 34 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.05 1.80 6.20 -2.39 -0.01 1.78 16 36 H 0.03 1.40 8.09 -2.39 -0.02 1.38 16 37 H 0.14 3.35 7.56 -2.91 -0.02 3.33 16 38 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 40 H 0.13 3.30 8.04 -2.91 -0.02 3.27 16 Total: -1.00 -56.99 331.27 3.39 -53.60 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.43 Total: 23.55 kcal Atomic # 6 Polarization: -43.87 SS G_CDS: 3.28 Total: -40.59 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -2.27 Total: -80.50 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -56.99 3.39 -53.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.689 kcal (2) G-P(sol) polarization free energy of solvation -56.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds