Wall clock time and date at job start Tue Mar 31 2020 05:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47052 * 2 1 4 4 H 1.09003 * 109.46825 * 306.21265 * 3 2 1 5 5 C 1.50695 * 109.47082 * 186.21363 * 3 2 1 6 6 H 1.08006 * 120.00021 * 239.99836 * 5 3 2 7 7 C 1.37874 * 120.00150 * 59.99793 * 5 3 2 8 8 N 1.31513 * 119.99937 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99922 * 359.72925 * 7 5 3 10 10 H 1.48502 * 109.46842 * 270.26734 * 9 7 5 11 11 H 1.48493 * 109.47654 * 30.26947 * 9 7 5 12 12 H 1.48501 * 109.47397 * 150.27533 * 9 7 5 13 13 N 1.46901 * 109.46815 * 66.21224 * 3 2 1 14 14 C 1.46900 * 110.99715 * 258.35787 * 13 3 2 15 15 H 1.09000 * 109.47350 * 40.80476 * 14 13 3 16 16 C 1.53006 * 109.46799 * 160.80213 * 14 13 3 17 17 C 1.52997 * 109.47109 * 293.75466 * 16 14 13 18 18 C 1.50700 * 109.47347 * 280.79764 * 14 13 3 19 19 C 1.38238 * 119.98859 * 319.73620 * 18 14 13 20 20 C 1.38212 * 120.01198 * 179.72260 * 19 18 14 21 21 C 1.38351 * 119.98883 * 0.54883 * 20 19 18 22 22 Cl 1.73600 * 120.01719 * 179.70683 * 21 20 19 23 23 C 1.38350 * 119.97168 * 359.71940 * 21 20 19 24 24 C 1.38220 * 119.98715 * 0.02562 * 23 21 20 25 25 H 1.08998 * 109.47283 * 60.91088 * 1 2 3 26 26 H 1.09005 * 109.47037 * 180.91291 * 1 2 3 27 27 H 1.08999 * 109.46808 * 300.90728 * 1 2 3 28 28 H 1.08998 * 109.46940 * 240.00185 * 2 1 3 29 29 H 1.08998 * 109.47315 * 119.99817 * 2 1 3 30 30 H 0.97003 * 120.00115 * 179.72666 * 8 7 5 31 31 H 1.00894 * 111.00213 * 22.31443 * 13 3 2 32 32 H 1.09000 * 109.47411 * 53.75578 * 16 14 13 33 33 H 1.09005 * 109.47084 * 173.75918 * 16 14 13 34 34 H 1.08997 * 109.47125 * 304.57115 * 17 16 14 35 35 H 1.09009 * 109.47128 * 64.57195 * 17 16 14 36 36 H 1.08998 * 109.47162 * 184.56601 * 17 16 14 37 37 H 1.07995 * 119.99337 * 359.97438 * 19 18 14 38 38 H 1.07998 * 120.00868 * 180.26496 * 20 19 18 39 39 H 1.08007 * 120.01140 * 179.97438 * 23 21 20 40 40 H 1.08003 * 119.99418 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5887 1.9875 -0.8292 5 6 3.5391 1.4454 -0.1538 6 1 4.1598 1.8845 0.6133 7 6 4.1183 0.8873 -1.2736 8 7 5.4265 0.8902 -1.4080 9 14 3.0451 0.1210 -2.5967 10 1 2.8307 -1.3160 -2.2892 11 1 1.7353 0.8192 -2.6377 12 1 3.7165 0.2501 -3.9150 13 7 1.6765 2.0904 1.2674 14 6 0.5095 2.9658 1.0953 15 1 -0.2172 2.4790 0.4448 16 6 -0.1288 3.2386 2.4588 17 6 -0.7106 1.9391 3.0188 18 6 0.9455 4.2683 0.4752 19 6 2.1270 4.8633 0.8766 20 6 2.5303 6.0549 0.3042 21 6 1.7457 6.6580 -0.6626 22 17 2.2477 8.1586 -1.3766 23 6 0.5606 6.0649 -1.0600 24 6 0.1609 4.8705 -0.4905 25 1 -0.3634 0.4996 -0.8980 26 1 -0.3633 -1.0276 0.0164 27 1 -0.3633 0.5279 0.8817 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.8343 0.4940 -2.1940 31 1 1.5113 1.4052 1.9893 32 1 0.6272 3.6230 3.1436 33 1 -0.9252 3.9744 2.3465 34 1 -1.4070 1.5122 2.2972 35 1 0.0967 1.2312 3.2073 36 1 -1.2356 2.1480 3.9508 37 1 2.7370 4.3948 1.6347 38 1 3.4554 6.5175 0.6148 39 1 -0.0526 6.5354 -1.8144 40 1 -0.7640 4.4072 -0.8010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182974.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:50 Heat of formation + Delta-G solvation = 9.734519 kcal Electronic energy + Delta-G solvation = -20525.012821 eV Core-core repulsion = 17558.069713 eV Total energy + Delta-G solvation = -2966.943108 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -39.40655 -37.35373 -36.10504 -34.20773 -31.93015 -30.91558 -30.72379 -29.73803 -27.17204 -25.03583 -22.60020 -22.54183 -21.93763 -20.08245 -19.84935 -16.92585 -16.60015 -15.82701 -15.23230 -14.82734 -14.66362 -14.32209 -13.72067 -13.48343 -13.19772 -13.07126 -12.85894 -12.83162 -12.46231 -12.17191 -11.89573 -11.72993 -11.57439 -11.21781 -11.18552 -10.85486 -10.75118 -10.65419 -10.56462 -10.47762 -10.29410 -9.89699 -9.41103 -9.17995 -8.65474 -8.52113 -8.19383 -7.44474 -6.01715 -3.97601 1.49726 1.68428 2.37799 3.25057 3.36432 3.38792 3.99219 4.42114 4.78241 5.04833 5.13799 5.20418 5.23477 5.25022 5.32072 5.54172 5.66768 5.72494 5.76288 5.77170 5.89078 5.90649 5.93675 6.00464 6.07047 6.23269 6.33931 6.35867 6.45897 6.49130 6.54667 6.65877 6.66971 6.73054 7.00664 7.12110 7.20560 7.76413 7.90992 8.29232 8.72637 9.11172 9.61743 11.11792 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013088 B = 0.006892 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.893863 B = 4061.821140 C = 5405.908536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.158 4.158 3 C 0.191 3.809 4 H 0.029 0.971 5 C -0.489 4.489 6 H 0.082 0.918 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.879 3.121 10 H -0.281 1.281 11 H -0.269 1.269 12 H -0.298 1.298 13 N -0.664 5.664 14 C 0.119 3.881 15 H 0.047 0.953 16 C -0.119 4.119 17 C -0.156 4.156 18 C -0.056 4.056 19 C -0.057 4.057 20 C -0.114 4.114 21 C -0.039 4.039 22 Cl -0.089 7.089 23 C -0.120 4.120 24 C -0.112 4.112 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.262 0.738 31 H 0.332 0.668 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.143 0.857 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.633 7.277 5.058 15.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.197 4.197 3 C 0.082 3.918 4 H 0.046 0.954 5 C -0.528 4.528 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.710 3.290 10 H -0.208 1.208 11 H -0.194 1.194 12 H -0.225 1.225 13 N -0.296 5.296 14 C 0.009 3.991 15 H 0.065 0.935 16 C -0.157 4.157 17 C -0.213 4.213 18 C -0.057 4.057 19 C -0.075 4.075 20 C -0.133 4.133 21 C -0.066 4.066 22 Cl -0.060 7.060 23 C -0.138 4.138 24 C -0.130 4.130 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.152 0.848 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.160 0.840 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.978 7.863 4.810 15.114 hybrid contribution -1.069 -1.142 -1.249 2.002 sum -13.046 6.721 3.561 15.102 Atomic orbital electron populations 1.22046 0.98244 1.00453 1.01120 1.22632 0.93216 1.02083 1.01734 1.19677 0.96996 0.87789 0.87325 0.95366 1.20996 0.89083 1.36923 1.05780 0.90001 1.24935 0.94676 0.96095 0.97689 1.69875 1.09149 1.45964 1.28991 0.86998 0.80956 0.79587 0.81481 1.20820 1.19394 1.22542 1.60629 1.34093 1.25018 1.09852 1.20554 0.92169 0.91350 0.95044 0.93488 1.21654 0.99980 0.97734 0.96302 1.21873 1.00918 0.97972 1.00558 1.19979 0.94651 0.95681 0.95412 1.21042 0.95134 0.92300 0.99025 1.21086 0.99461 0.96382 0.96387 1.20856 0.97079 0.89541 0.99116 1.98334 1.91312 1.33025 1.83355 1.20832 0.95681 0.96342 1.00980 1.20924 1.00064 0.95111 0.96950 0.93591 0.93880 0.92721 0.92778 0.91954 0.92815 0.84803 0.90869 0.91905 0.92843 0.92157 0.92730 0.83966 0.85401 0.85741 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 8.87 37.16 0.33 -2.32 16 2 C -0.16 -3.21 4.74 -26.73 -0.13 -3.34 16 3 C 0.19 4.22 1.53 -68.86 -0.11 4.12 16 4 H 0.03 0.68 6.41 -51.93 -0.33 0.35 16 5 C -0.49 -13.32 9.42 -34.44 -0.32 -13.65 16 6 H 0.08 2.46 8.06 -52.48 -0.42 2.03 16 7 C 0.07 1.91 5.45 -17.82 -0.10 1.82 16 8 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 9 Si 0.88 21.93 24.41 -169.99 -4.15 17.78 16 10 H -0.28 -6.82 6.82 56.52 0.39 -6.44 16 11 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 12 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 13 N -0.66 -12.08 5.11 -102.16 -0.52 -12.60 16 14 C 0.12 1.83 1.42 -68.86 -0.10 1.73 16 15 H 0.05 0.74 6.02 -51.93 -0.31 0.42 16 16 C -0.12 -1.45 5.52 -26.73 -0.15 -1.60 16 17 C -0.16 -1.68 8.85 37.16 0.33 -1.36 16 18 C -0.06 -0.92 4.42 -104.62 -0.46 -1.38 16 19 C -0.06 -0.96 9.32 -39.59 -0.37 -1.32 16 20 C -0.11 -1.83 9.83 -39.55 -0.39 -2.22 16 21 C -0.04 -0.61 6.32 -39.50 -0.25 -0.86 16 22 Cl -0.09 -1.24 28.96 -51.86 -1.50 -2.74 16 23 C -0.12 -1.75 9.83 -39.55 -0.39 -2.13 16 24 C -0.11 -1.67 9.67 -39.59 -0.38 -2.05 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.78 4.37 -51.93 -0.23 0.56 16 28 H 0.05 1.22 3.19 -51.93 -0.17 1.05 16 29 H 0.06 1.23 8.01 -51.93 -0.42 0.81 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.33 5.57 5.95 -39.29 -0.23 5.34 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.57 7.07 -51.93 -0.37 0.20 16 35 H 0.06 0.68 6.64 -51.92 -0.35 0.33 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.14 2.47 7.73 -52.49 -0.41 2.06 16 38 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 40 H 0.12 1.57 8.04 -52.48 -0.42 1.15 16 LS Contribution 324.73 15.07 4.89 4.89 Total: -1.00 -29.33 324.73 -8.78 -38.11 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.79 Total: 5.84 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -2.48 Total: -24.57 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.25 Total: -39.32 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.15 Total: 17.78 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.50 Total: -2.74 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.33 -8.78 -38.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182974.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.846 kcal (2) G-P(sol) polarization free energy of solvation -29.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds