Wall clock time and date at job start Tue Mar 31 2020 05:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47510 * 2 1 4 4 H 1.09003 * 109.46765 * 55.71871 * 3 2 1 5 5 C 1.50703 * 109.47096 * 175.71452 * 3 2 1 6 6 H 1.07993 * 119.99856 * 120.00566 * 5 3 2 7 7 C 1.37873 * 119.99983 * 300.00238 * 5 3 2 8 8 N 1.31513 * 120.00114 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99921 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47554 * 89.99777 * 9 7 5 11 11 H 1.48502 * 109.47266 * 209.99833 * 9 7 5 12 12 H 1.48503 * 109.46942 * 329.99627 * 9 7 5 13 13 N 1.46894 * 109.47309 * 295.71818 * 3 2 1 14 14 C 1.46893 * 111.00368 * 160.65931 * 13 3 2 15 15 H 1.09004 * 109.46995 * 18.48111 * 14 13 3 16 16 C 1.53001 * 109.47321 * 258.48330 * 14 13 3 17 17 C 1.53003 * 109.46954 * 65.98674 * 16 14 13 18 18 C 1.50704 * 109.47336 * 138.48314 * 14 13 3 19 19 C 1.38238 * 119.98595 * 39.72655 * 18 14 13 20 20 C 1.38218 * 120.01388 * 179.72447 * 19 18 14 21 21 C 1.38360 * 119.98125 * 0.55106 * 20 19 18 22 22 Cl 1.73600 * 120.00938 * 179.74586 * 21 20 19 23 23 C 1.38350 * 119.97318 * 359.72182 * 21 20 19 24 24 C 1.38214 * 119.99158 * 0.02562 * 23 21 20 25 25 H 1.08998 * 109.47296 * 174.75688 * 1 2 3 26 26 H 1.09000 * 109.46764 * 294.75905 * 1 2 3 27 27 H 1.09006 * 109.46760 * 54.75492 * 1 2 3 28 28 H 1.09009 * 109.47254 * 120.00340 * 2 1 3 29 29 H 1.09004 * 109.47080 * 239.99554 * 2 1 3 30 30 H 0.97006 * 120.00099 * 180.02562 * 8 7 5 31 31 H 1.00910 * 110.99623 * 284.61547 * 13 3 2 32 32 H 1.08995 * 109.47308 * 185.98934 * 16 14 13 33 33 H 1.09008 * 109.46957 * 305.99190 * 16 14 13 34 34 H 1.09001 * 109.46865 * 180.64482 * 17 16 14 35 35 H 1.08996 * 109.47349 * 300.64498 * 17 16 14 36 36 H 1.08998 * 109.46706 * 60.64271 * 17 16 14 37 37 H 1.08007 * 119.99312 * 0.02562 * 19 18 14 38 38 H 1.07992 * 120.01235 * 180.27344 * 20 19 18 39 39 H 1.08001 * 120.00012 * 179.97438 * 23 21 20 40 40 H 1.07998 * 119.99668 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6154 1.9779 0.8492 5 6 3.5434 1.4437 0.1062 6 1 4.1395 1.8915 -0.6751 7 6 4.1576 0.8731 1.2007 8 7 3.4316 0.3283 2.1524 9 14 6.0209 0.8753 1.3327 10 1 6.4661 2.1052 2.0357 11 1 6.4646 -0.3190 2.0957 12 1 6.6136 0.8412 -0.0286 13 7 1.6367 2.1045 -1.2477 14 6 1.6896 3.5659 -1.1092 15 1 2.3126 3.8275 -0.2538 16 6 0.2755 4.1095 -0.8955 17 6 -0.2627 3.6161 0.4492 18 6 2.2755 4.1683 -2.3603 19 6 1.9345 3.6568 -3.5985 20 6 2.4671 4.2124 -4.7465 21 6 3.3505 5.2735 -4.6557 22 17 4.0249 5.9676 -6.0968 23 6 3.6956 5.7812 -3.4158 24 6 3.1584 5.2281 -2.2688 25 1 -0.3634 -1.0233 -0.0939 26 1 -0.3633 0.4304 0.9332 27 1 -0.3633 0.5931 -0.8394 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.8638 -0.0728 2.9227 31 1 2.2046 1.7938 -2.0218 32 1 0.3007 5.1991 -0.8990 33 1 -0.3738 3.7584 -1.6976 34 1 -1.2744 3.9940 0.5963 35 1 -0.2771 2.5263 0.4569 36 1 0.3803 3.9767 1.2521 37 1 1.2481 2.8259 -3.6690 38 1 2.1973 3.8157 -5.7140 39 1 4.3854 6.6092 -3.3444 40 1 3.4274 5.6247 -1.3010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182976.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:55 Heat of formation + Delta-G solvation = -3.769826 kcal Electronic energy + Delta-G solvation = -20245.499953 eV Core-core repulsion = 17277.971253 eV Total energy + Delta-G solvation = -2967.528700 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.48900 -37.05888 -36.15497 -33.85913 -31.62358 -30.99830 -30.81569 -29.67801 -26.40760 -24.76211 -22.86212 -22.52036 -21.84234 -19.74161 -19.45694 -17.15918 -16.54457 -15.58557 -15.28326 -14.70450 -14.31556 -13.94585 -13.64695 -13.37523 -13.28345 -13.07690 -12.75158 -12.26931 -12.14163 -11.92350 -11.47718 -11.43768 -11.21596 -11.15464 -10.96281 -10.85410 -10.71453 -10.67305 -10.50324 -10.22812 -10.07731 -9.60970 -9.38388 -9.09621 -8.89287 -8.37252 -8.34820 -7.33476 -6.01646 -4.14461 1.30128 1.44303 2.18702 3.24556 3.32554 3.35885 3.79314 4.37850 4.88919 4.99496 5.02897 5.19733 5.27237 5.52651 5.58389 5.71833 5.74347 5.90284 6.00308 6.08894 6.28940 6.34391 6.35097 6.42317 6.45696 6.48393 6.51586 6.65462 6.67474 6.87198 6.96234 6.98854 7.11980 7.16829 7.41208 7.58551 7.76085 8.04526 8.13914 8.30371 8.61743 8.97737 9.53627 10.97994 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.005373 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.247606 B = 5209.621068 C = 6292.654994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.212 3.788 4 H 0.043 0.957 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.679 5.679 14 C 0.125 3.875 15 H 0.069 0.931 16 C -0.099 4.099 17 C -0.153 4.153 18 C -0.067 4.067 19 C -0.096 4.096 20 C -0.113 4.113 21 C -0.044 4.044 22 Cl -0.086 7.086 23 C -0.113 4.113 24 C -0.102 4.102 25 H 0.024 0.976 26 H 0.037 0.963 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.329 0.671 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.139 0.861 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 8.548 -9.691 13.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C 0.104 3.896 4 H 0.061 0.939 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.712 3.288 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.309 5.309 14 C 0.015 3.985 15 H 0.087 0.913 16 C -0.137 4.137 17 C -0.210 4.210 18 C -0.068 4.068 19 C -0.114 4.114 20 C -0.131 4.131 21 C -0.071 4.071 22 Cl -0.058 7.058 23 C -0.131 4.131 24 C -0.121 4.121 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.157 0.843 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.271 8.458 -9.481 13.404 hybrid contribution 2.306 0.185 0.004 2.313 sum -1.965 8.643 -9.478 12.976 Atomic orbital electron populations 1.21761 0.99004 0.98523 1.00412 1.21510 0.92087 0.99327 1.01707 1.19316 0.92543 0.91156 0.86596 0.93895 1.21888 0.92869 1.37956 1.05742 0.92993 1.24897 0.97719 0.94995 0.95711 1.69867 1.34801 1.38093 1.09500 0.86720 0.86401 0.77539 0.78100 1.20790 1.21177 1.20043 1.61100 1.58923 1.02128 1.08785 1.20501 0.95023 0.90142 0.92831 0.91345 1.21477 0.95900 0.98138 0.98187 1.21853 0.98904 1.03618 0.96598 1.20534 0.95269 0.94890 0.96057 1.21075 0.99621 0.99786 0.90916 1.21023 0.97079 0.95517 0.99531 1.20864 1.00474 0.98443 0.87282 1.98342 1.84710 1.84203 1.38504 1.20971 1.00777 1.00693 0.90696 1.21090 0.96661 0.96254 0.98080 0.95726 0.94433 0.92911 0.89157 0.95261 0.92910 0.85392 0.93379 0.92074 0.94223 0.90368 0.93389 0.84306 0.85372 0.85451 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.82 37.16 0.33 -2.38 16 2 C -0.11 -2.45 5.45 -26.73 -0.15 -2.59 16 3 C 0.21 4.84 1.15 -68.87 -0.08 4.76 16 4 H 0.04 1.08 6.16 -51.93 -0.32 0.76 16 5 C -0.55 -14.05 8.12 -34.44 -0.28 -14.33 16 6 H 0.05 1.36 7.81 -52.49 -0.41 0.95 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.22 11.30 55.43 0.63 -23.59 16 9 Si 0.88 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.68 -12.89 4.77 -102.17 -0.49 -13.38 16 14 C 0.13 2.15 2.17 -68.87 -0.15 2.00 16 15 H 0.07 1.36 7.20 -51.93 -0.37 0.98 16 16 C -0.10 -1.51 5.58 -26.73 -0.15 -1.66 16 17 C -0.15 -2.45 8.85 37.16 0.33 -2.12 16 18 C -0.07 -1.03 4.76 -104.62 -0.50 -1.52 16 19 C -0.10 -1.35 8.76 -39.59 -0.35 -1.69 16 20 C -0.11 -1.47 9.83 -39.54 -0.39 -1.86 16 21 C -0.04 -0.59 6.32 -39.50 -0.25 -0.84 16 22 Cl -0.09 -1.04 28.96 -51.86 -1.50 -2.54 16 23 C -0.11 -1.50 9.83 -39.55 -0.39 -1.89 16 24 C -0.10 -1.48 9.67 -39.59 -0.38 -1.86 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.04 0.72 7.57 -51.93 -0.39 0.33 16 27 H 0.05 0.97 7.52 -51.93 -0.39 0.58 16 28 H 0.09 2.33 5.97 -51.92 -0.31 2.02 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.33 6.35 7.01 -39.29 -0.28 6.08 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.40 4.72 -51.93 -0.25 1.16 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.14 1.87 7.51 -52.48 -0.39 1.48 16 38 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 39 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 40 H 0.13 1.75 8.04 -52.49 -0.42 1.33 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -25.92 333.27 -9.91 -35.83 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.05 Total: 7.07 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -2.50 Total: -24.23 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.14 Total: -36.97 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.54 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -25.92 -9.91 -35.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182976.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.062 kcal (2) G-P(sol) polarization free energy of solvation -25.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds