Wall clock time and date at job start Tue Mar 31 2020 05:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47327 * 2 1 4 4 C 1.50702 * 109.47143 * 240.00175 * 2 1 3 5 5 C 1.38268 * 119.99205 * 286.51418 * 4 2 1 6 6 C 1.38223 * 120.02031 * 180.23093 * 5 4 2 7 7 C 1.38230 * 120.02083 * 359.78979 * 6 5 4 8 8 C 1.38339 * 119.98416 * 359.97438 * 7 6 5 9 9 Cl 1.73601 * 120.01337 * 180.02562 * 8 7 6 10 10 C 1.38193 * 119.99205 * 106.28070 * 4 2 1 11 11 N 1.46899 * 109.47283 * 119.99998 * 2 1 3 12 12 C 1.46899 * 110.99927 * 307.71924 * 11 2 1 13 13 C 1.46897 * 111.00185 * 183.75948 * 11 2 1 14 14 C 1.52997 * 109.47428 * 189.99891 * 13 11 2 15 15 C 1.53004 * 109.47257 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.47131 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00172 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99920 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00091 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99732 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47335 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47304 * 120.00073 * 20 18 16 23 23 H 1.48501 * 109.47273 * 239.99721 * 20 18 16 24 24 H 1.08997 * 109.47024 * 60.00174 * 1 2 3 25 25 H 1.09007 * 109.46821 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46817 * 299.99862 * 1 2 3 27 27 H 1.07992 * 119.98967 * 0.02562 * 5 4 2 28 28 H 1.08010 * 119.98798 * 179.76955 * 6 5 4 29 29 H 1.07993 * 120.01236 * 179.97438 * 7 6 5 30 30 H 1.07997 * 120.00898 * 0.02562 * 10 4 2 31 31 H 1.08995 * 109.47271 * 65.64926 * 12 11 2 32 32 H 1.09000 * 109.46775 * 185.64947 * 12 11 2 33 33 H 1.09002 * 109.46945 * 305.64396 * 12 11 2 34 34 H 1.09007 * 109.47392 * 310.00756 * 13 11 2 35 35 H 1.09002 * 109.46683 * 70.00019 * 13 11 2 36 36 H 1.08997 * 109.47494 * 300.00652 * 14 13 11 37 37 H 1.09002 * 109.47084 * 60.00374 * 14 13 11 38 38 H 1.09000 * 109.46882 * 300.00137 * 15 14 13 39 39 H 1.09002 * 109.46792 * 60.00166 * 15 14 13 40 40 H 0.97003 * 120.00350 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 1.9418 -2.0872 -1.3191 6 6 2.4067 -2.7398 -2.4454 7 6 2.9585 -2.0160 -3.4857 8 6 3.0449 -0.6380 -3.3997 9 17 3.7372 0.2719 -4.7061 10 6 2.5790 0.0149 -2.2721 11 7 2.0197 -0.6925 1.1994 12 6 1.4042 -0.1410 2.4139 13 6 3.4854 -0.6347 1.2792 14 6 3.9729 -1.5671 2.3899 15 6 5.4995 -1.5064 2.4734 16 6 5.9797 -2.4252 3.5671 17 1 5.2673 -2.9951 4.1451 18 6 7.3284 -2.5375 3.8304 19 7 8.1958 -1.8431 3.1269 20 14 7.9236 -3.6759 5.1866 21 1 6.7574 -4.3381 5.8244 22 1 8.8234 -4.7062 4.6087 23 1 8.6631 -2.8881 6.2052 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5108 -2.6532 -0.5066 28 1 2.3392 -3.8157 -2.5124 29 1 3.3221 -2.5260 -4.3655 30 1 2.6466 1.0906 -2.2042 31 1 0.3343 -0.3490 2.4056 32 1 1.8571 -0.6014 3.2919 33 1 1.5646 0.9367 2.4453 34 1 3.9138 -0.9485 0.3272 35 1 3.7973 0.3864 1.4989 36 1 3.5446 -1.2533 3.3418 37 1 3.6610 -2.5881 2.1702 38 1 5.9281 -1.8200 1.5215 39 1 5.8110 -0.4852 2.6934 40 1 9.1447 -1.9224 3.3119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061559623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:59 Heat of formation + Delta-G solvation = 5.013151 kcal Electronic energy + Delta-G solvation = -19581.233314 eV Core-core repulsion = 16614.085472 eV Total energy + Delta-G solvation = -2967.147842 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.83368 -37.66806 -36.39632 -34.06067 -32.47230 -31.05229 -30.65282 -29.14240 -26.98645 -25.59373 -23.23394 -22.70896 -22.12442 -20.02923 -19.79095 -17.09990 -16.35438 -15.99489 -15.66478 -14.98430 -14.71653 -14.37774 -14.34569 -13.92764 -13.59356 -13.43063 -12.93220 -12.48241 -12.27963 -12.19412 -11.93038 -11.65585 -11.57998 -11.36184 -11.30207 -11.19388 -11.04362 -10.78566 -10.72412 -10.48804 -10.42714 -9.58116 -9.31825 -9.02431 -8.92483 -8.63269 -8.31998 -8.11141 -5.96896 -3.98934 1.17846 1.23262 2.07786 3.32696 3.40091 3.44362 3.59793 4.10060 4.48710 4.56392 4.79470 5.03408 5.15362 5.17505 5.31214 5.38325 5.38813 5.40430 5.56676 5.62167 5.69104 5.79765 5.82944 5.86593 5.98274 6.07585 6.15977 6.18622 6.35163 6.37577 6.52528 6.72408 6.79144 6.81389 7.13847 7.34947 7.38473 7.72043 7.86946 8.03791 8.46951 9.08619 9.65010 11.14613 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015602 B = 0.004066 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.166430 B = 6885.412605 C = 7963.417240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.118 3.882 3 H 0.047 0.953 4 C -0.060 4.060 5 C -0.081 4.081 6 C -0.110 4.110 7 C -0.114 4.114 8 C -0.035 4.035 9 Cl -0.079 7.079 10 C -0.109 4.109 11 N -0.534 5.534 12 C 0.020 3.980 13 C 0.055 3.945 14 C -0.103 4.103 15 C 0.022 3.978 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.137 0.863 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.022 0.978 34 H 0.070 0.930 35 H 0.027 0.973 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.012 0.988 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.938 3.524 -12.262 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.010 3.990 3 H 0.065 0.935 4 C -0.061 4.061 5 C -0.099 4.099 6 C -0.128 4.128 7 C -0.133 4.133 8 C -0.062 4.062 9 Cl -0.050 7.050 10 C -0.128 4.128 11 N -0.259 5.259 12 C -0.128 4.128 13 C -0.072 4.072 14 C -0.141 4.141 15 C -0.016 4.016 16 C -0.555 4.555 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.155 0.845 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.835 3.156 -12.424 20.373 hybrid contribution 0.948 0.392 0.630 1.204 sum -14.888 3.549 -11.794 19.322 Atomic orbital electron populations 1.21910 0.93511 1.02844 1.01743 1.20540 0.95379 0.94799 0.88323 0.93527 1.19699 0.97848 0.94101 0.94435 1.21173 0.97611 0.93874 0.97285 1.21165 0.98273 1.00179 0.93209 1.21031 1.00409 0.91813 1.00031 1.20812 1.02204 0.92305 0.90874 1.98359 1.83418 1.74763 1.48480 1.20899 0.99280 1.00279 0.92334 1.62139 1.07978 1.54617 1.01146 1.22469 0.99737 0.97197 0.93376 1.22318 0.84924 0.98840 1.01129 1.21644 0.99239 0.97864 0.95317 1.19069 0.88547 0.96945 0.97019 1.21281 0.91816 1.24983 1.17433 0.92654 1.25025 0.97033 0.95966 0.96472 1.69978 1.01775 1.41406 1.40411 0.86561 0.78787 0.80770 0.82043 1.19723 1.21029 1.21078 0.92333 0.91512 0.91958 0.84534 0.85116 0.85272 0.85391 0.91601 0.90394 0.95989 0.91175 0.95443 0.93433 0.92680 0.96678 0.96917 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.63 37.16 0.32 -1.07 16 2 C 0.12 1.44 2.27 -68.86 -0.16 1.28 16 3 H 0.05 0.58 7.93 -51.93 -0.41 0.17 16 4 C -0.06 -0.76 3.51 -104.63 -0.37 -1.12 16 5 C -0.08 -1.01 9.09 -39.58 -0.36 -1.37 16 6 C -0.11 -1.25 10.04 -39.59 -0.40 -1.65 16 7 C -0.11 -1.32 9.83 -39.55 -0.39 -1.71 16 8 C -0.04 -0.44 6.32 -39.49 -0.25 -0.69 16 9 Cl -0.08 -0.92 28.96 -51.86 -1.50 -2.42 16 10 C -0.11 -1.35 9.45 -39.55 -0.37 -1.73 16 11 N -0.53 -7.62 4.13 -236.29 -0.98 -8.60 16 12 C 0.02 0.26 8.69 60.06 0.52 0.78 16 13 C 0.05 0.97 4.81 -3.83 -0.02 0.95 16 14 C -0.10 -2.14 5.10 -26.73 -0.14 -2.28 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 20 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.66 8.06 -51.93 -0.42 0.24 16 26 H 0.06 0.56 6.44 -51.93 -0.33 0.23 16 27 H 0.14 1.68 7.92 -52.49 -0.42 1.26 16 28 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 29 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.13 1.45 7.99 -52.49 -0.42 1.03 16 31 H 0.07 0.71 6.56 -51.93 -0.34 0.37 16 32 H 0.08 1.09 6.10 -51.93 -0.32 0.77 16 33 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 34 H 0.07 1.30 6.84 -51.93 -0.36 0.94 16 35 H 0.03 0.50 8.12 -51.93 -0.42 0.07 16 36 H 0.05 0.97 6.37 -51.93 -0.33 0.64 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 339.71 15.07 5.12 5.12 Total: -1.00 -30.34 339.71 -10.06 -40.41 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -6.27 Total: -2.97 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -2.15 Total: -21.78 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.24 Total: -35.21 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.34 -10.06 -40.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061559623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.419 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds