Wall clock time and date at job start Tue Mar 31 2020 05:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47327 * 2 1 4 4 C 1.50702 * 109.47143 * 240.00175 * 2 1 3 5 5 C 1.38268 * 119.99205 * 286.51418 * 4 2 1 6 6 C 1.38223 * 120.02031 * 180.23093 * 5 4 2 7 7 C 1.38230 * 120.02083 * 359.78979 * 6 5 4 8 8 C 1.38339 * 119.98416 * 359.97438 * 7 6 5 9 9 Cl 1.73601 * 120.01337 * 180.02562 * 8 7 6 10 10 C 1.38193 * 119.99205 * 106.28070 * 4 2 1 11 11 N 1.46899 * 109.47283 * 119.99998 * 2 1 3 12 12 C 1.46899 * 110.99927 * 307.71924 * 11 2 1 13 13 C 1.46897 * 111.00185 * 183.75948 * 11 2 1 14 14 C 1.52997 * 109.47428 * 189.99891 * 13 11 2 15 15 C 1.53004 * 109.47257 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.47131 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00172 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99920 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00091 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99732 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47335 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47304 * 120.00073 * 20 18 16 23 23 H 1.48501 * 109.47273 * 239.99721 * 20 18 16 24 24 H 1.08997 * 109.47024 * 60.00174 * 1 2 3 25 25 H 1.09007 * 109.46821 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46817 * 299.99862 * 1 2 3 27 27 H 1.07992 * 119.98967 * 0.02562 * 5 4 2 28 28 H 1.08010 * 119.98798 * 179.76955 * 6 5 4 29 29 H 1.07993 * 120.01236 * 179.97438 * 7 6 5 30 30 H 1.07997 * 120.00898 * 0.02562 * 10 4 2 31 31 H 1.08995 * 109.47271 * 65.64926 * 12 11 2 32 32 H 1.09000 * 109.46775 * 185.64947 * 12 11 2 33 33 H 1.09002 * 109.46945 * 305.64396 * 12 11 2 34 34 H 1.09007 * 109.47392 * 310.00756 * 13 11 2 35 35 H 1.09002 * 109.46683 * 70.00019 * 13 11 2 36 36 H 1.08997 * 109.47494 * 300.00652 * 14 13 11 37 37 H 1.09002 * 109.47084 * 60.00374 * 14 13 11 38 38 H 1.09000 * 109.46882 * 300.00137 * 15 14 13 39 39 H 1.09002 * 109.46792 * 60.00166 * 15 14 13 40 40 H 0.97003 * 120.00350 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 1.9418 -2.0872 -1.3191 6 6 2.4067 -2.7398 -2.4454 7 6 2.9585 -2.0160 -3.4857 8 6 3.0449 -0.6380 -3.3997 9 17 3.7372 0.2719 -4.7061 10 6 2.5790 0.0149 -2.2721 11 7 2.0197 -0.6925 1.1994 12 6 1.4042 -0.1410 2.4139 13 6 3.4854 -0.6347 1.2792 14 6 3.9729 -1.5671 2.3899 15 6 5.4995 -1.5064 2.4734 16 6 5.9797 -2.4252 3.5671 17 1 5.2673 -2.9951 4.1451 18 6 7.3284 -2.5375 3.8304 19 7 8.1958 -1.8431 3.1269 20 14 7.9236 -3.6759 5.1866 21 1 6.7574 -4.3381 5.8244 22 1 8.8234 -4.7062 4.6087 23 1 8.6631 -2.8881 6.2052 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5108 -2.6532 -0.5066 28 1 2.3392 -3.8157 -2.5124 29 1 3.3221 -2.5260 -4.3655 30 1 2.6466 1.0906 -2.2042 31 1 0.3343 -0.3490 2.4056 32 1 1.8571 -0.6014 3.2919 33 1 1.5646 0.9367 2.4453 34 1 3.9138 -0.9485 0.3272 35 1 3.7973 0.3864 1.4989 36 1 3.5446 -1.2533 3.3418 37 1 3.6610 -2.5881 2.1702 38 1 5.9281 -1.8200 1.5215 39 1 5.8110 -0.4852 2.6934 40 1 9.1447 -1.9224 3.3119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061559623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:59 Heat of formation + Delta-G solvation = -10.594099 kcal Electronic energy + Delta-G solvation = -19581.910095 eV Core-core repulsion = 16614.085472 eV Total energy + Delta-G solvation = -2967.824623 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80419 -38.77053 -37.35671 -35.88621 -34.08338 -32.44715 -31.63184 -30.28425 -28.37891 -27.09668 -24.60080 -23.76134 -23.41046 -21.64271 -20.92598 -18.49061 -18.01916 -17.18103 -16.67370 -16.43853 -16.13998 -15.76149 -15.50435 -15.17928 -14.56157 -14.42596 -14.30342 -14.07189 -13.67016 -13.33229 -13.21916 -12.95001 -12.80376 -12.63111 -12.52934 -12.45808 -12.34074 -12.18713 -12.11994 -12.02465 -11.57875 -11.39405 -11.33596 -11.06209 -10.55343 -9.85738 -9.57544 -9.27665 -8.19623 -6.30829 0.23903 0.31020 1.14600 1.40323 1.40568 1.54259 2.41220 2.65380 2.99427 3.13699 3.62108 3.90414 4.09106 4.19261 4.22176 4.28514 4.33063 4.39567 4.49282 4.60928 4.69411 4.71854 4.75150 4.85805 4.90878 4.97092 5.02056 5.11955 5.12719 5.24649 5.27176 5.33792 5.44193 5.52463 5.59817 5.74744 5.86433 5.88372 6.09565 6.21408 6.27820 6.86495 7.38712 8.92689 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015602 B = 0.004066 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.166430 B = 6885.412605 C = 7963.417240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.118 3.882 3 H 0.045 0.955 4 C -0.070 4.070 5 C -0.092 4.092 6 C -0.112 4.112 7 C -0.119 4.119 8 C -0.047 4.047 9 Cl -0.076 7.076 10 C -0.119 4.119 11 N -0.534 5.534 12 C 0.019 3.981 13 C 0.071 3.929 14 C -0.086 4.086 15 C 0.026 3.974 16 C -0.539 4.539 17 H 0.061 0.939 18 C -0.001 4.001 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.260 1.260 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.137 0.863 28 H 0.152 0.848 29 H 0.146 0.854 30 H 0.134 0.866 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.027 0.973 34 H 0.058 0.942 35 H 0.018 0.982 36 H 0.054 0.946 37 H 0.053 0.947 38 H -0.013 1.013 39 H -0.013 1.013 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.253 2.774 -11.820 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.010 3.990 3 H 0.062 0.938 4 C -0.070 4.070 5 C -0.110 4.110 6 C -0.130 4.130 7 C -0.138 4.138 8 C -0.073 4.073 9 Cl -0.048 7.048 10 C -0.139 4.139 11 N -0.259 5.259 12 C -0.129 4.129 13 C -0.057 4.057 14 C -0.124 4.124 15 C -0.011 4.011 16 C -0.577 4.577 17 H 0.079 0.921 18 C -0.199 4.199 19 N -0.576 5.576 20 Si 0.790 3.210 21 H -0.184 1.184 22 H -0.204 1.204 23 H -0.204 1.204 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.155 0.845 28 H 0.170 0.830 29 H 0.164 0.836 30 H 0.152 0.848 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.005 0.995 39 H 0.005 0.995 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.177 2.411 -11.986 21.083 hybrid contribution 1.355 0.653 0.440 1.567 sum -15.822 3.065 -11.545 19.825 Atomic orbital electron populations 1.21871 0.91244 1.03276 1.02893 1.20627 0.97061 0.94242 0.87076 0.93753 1.19808 0.98186 0.94387 0.94667 1.21287 0.98070 0.93925 0.97758 1.21447 0.97506 1.01348 0.92693 1.21296 1.00113 0.91657 1.00724 1.20988 1.02448 0.92848 0.91062 1.98356 1.83379 1.74761 1.48268 1.21033 0.99526 1.00744 0.92557 1.62075 1.05500 1.55607 1.02671 1.22536 1.01024 0.97301 0.92001 1.21952 0.87491 0.97238 0.99022 1.21379 0.95352 0.98669 0.97019 1.18961 0.92245 0.94873 0.95038 1.21706 0.92456 1.25466 1.18091 0.92108 1.25996 0.97219 0.97589 0.99076 1.70113 1.02255 1.42995 1.42220 0.85394 0.78476 0.78494 0.78665 1.18403 1.20388 1.20374 0.91169 0.91397 0.90839 0.84543 0.82986 0.83603 0.84822 0.88928 0.91760 0.95482 0.92397 0.96331 0.92774 0.92842 0.99497 0.99485 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.63 71.98 0.62 -1.71 16 2 C 0.12 2.73 2.27 44.17 0.10 2.83 16 3 H 0.04 1.06 7.93 -2.39 -0.02 1.04 16 4 C -0.07 -1.71 3.51 -19.87 -0.07 -1.78 16 5 C -0.09 -2.20 9.09 22.27 0.20 -2.00 16 6 C -0.11 -2.41 10.04 22.26 0.22 -2.19 16 7 C -0.12 -2.63 9.83 22.29 0.22 -2.41 16 8 C -0.05 -1.13 6.32 22.33 0.14 -0.99 16 9 Cl -0.08 -1.73 28.96 -2.72 -0.08 -1.81 16 10 C -0.12 -2.92 9.45 22.29 0.21 -2.71 16 11 N -0.53 -14.66 4.13 -901.47 -3.72 -18.38 16 12 C 0.02 0.45 8.69 127.69 1.11 1.56 16 13 C 0.07 2.51 4.81 86.30 0.41 2.92 16 14 C -0.09 -3.63 5.10 30.59 0.16 -3.47 16 15 C 0.03 1.44 4.97 29.85 0.15 1.58 16 16 C -0.54 -31.26 9.11 25.60 0.23 -31.02 16 17 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 18 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 19 N -0.94 -58.03 13.29 21.45 0.28 -57.75 16 20 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.17 8.06 -2.38 -0.02 1.15 16 26 H 0.07 1.10 6.44 -2.39 -0.02 1.08 16 27 H 0.14 3.21 7.92 -2.91 -0.02 3.19 16 28 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 29 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 30 H 0.13 2.99 7.99 -2.91 -0.02 2.96 16 31 H 0.09 1.72 6.56 -2.39 -0.02 1.71 16 32 H 0.06 1.71 6.10 -2.39 -0.01 1.70 16 33 H 0.03 0.62 8.13 -2.39 -0.02 0.60 16 34 H 0.06 2.19 6.84 -2.38 -0.02 2.17 16 35 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 36 H 0.05 2.19 6.37 -2.39 -0.02 2.18 16 37 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 38 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 39 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -65.21 339.71 3.68 -61.53 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.00 Total: 8.65 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 4.17 Total: -39.01 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -3.44 Total: -76.13 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Total: -65.21 3.68 -61.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061559623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.934 kcal (2) G-P(sol) polarization free energy of solvation -65.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds