Wall clock time and date at job start Tue Mar 31 2020 05:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47611 * 2 1 4 4 C 1.50706 * 109.47238 * 239.99389 * 2 1 3 5 5 C 1.38230 * 120.01028 * 265.00443 * 4 2 1 6 6 C 1.38216 * 120.01491 * 180.02562 * 5 4 2 7 7 C 1.38261 * 120.02812 * 359.97438 * 6 5 4 8 8 C 1.38196 * 120.01046 * 359.97438 * 7 6 5 9 9 C 1.38334 * 120.00202 * 84.72473 * 4 2 1 10 10 Cl 1.73596 * 120.01373 * 359.97438 * 9 4 2 11 11 N 1.46902 * 109.47094 * 120.00004 * 2 1 3 12 12 C 1.46904 * 110.99963 * 176.04631 * 11 2 1 13 13 C 1.46905 * 110.99800 * 299.99722 * 11 2 1 14 14 C 1.52992 * 109.47175 * 170.00004 * 13 11 2 15 15 C 1.53005 * 109.47157 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.47289 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99964 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00140 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99690 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00038 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46854 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47063 * 120.00153 * 20 18 16 23 23 H 1.48501 * 109.46858 * 240.00495 * 20 18 16 24 24 H 1.09001 * 109.46832 * 60.00297 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00488 * 1 2 3 27 27 H 1.08001 * 119.98961 * 359.97438 * 5 4 2 28 28 H 1.08002 * 119.98634 * 179.97438 * 6 5 4 29 29 H 1.07994 * 119.99346 * 179.97438 * 7 6 5 30 30 H 1.07997 * 120.00472 * 180.02562 * 8 7 6 31 31 H 1.08998 * 109.47155 * 59.99686 * 12 11 2 32 32 H 1.08998 * 109.46503 * 179.97438 * 12 11 2 33 33 H 1.08998 * 109.46991 * 299.99213 * 12 11 2 34 34 H 1.09006 * 109.47115 * 290.00116 * 13 11 2 35 35 H 1.08997 * 109.47089 * 49.99934 * 13 11 2 36 36 H 1.08994 * 109.47509 * 299.99860 * 14 13 11 37 37 H 1.09004 * 109.46947 * 60.00278 * 14 13 11 38 38 H 1.09006 * 109.47187 * 300.00144 * 15 14 13 39 39 H 1.08997 * 109.47036 * 59.99973 * 15 14 13 40 40 H 0.97008 * 119.99471 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 6 2.3611 -2.0518 -1.1685 6 6 2.8224 -2.7034 -2.2967 7 6 2.9548 -2.0144 -3.4881 8 6 2.6254 -0.6738 -3.5516 9 6 2.1591 -0.0220 -2.4235 10 17 1.7389 1.6604 -2.5040 11 7 2.0196 -0.6925 1.1994 12 6 3.4851 -0.7945 1.1871 13 6 1.5486 -0.0263 2.4211 14 6 1.8626 -0.9041 3.6341 15 6 1.3726 -0.2100 4.9066 16 6 1.6824 -1.0744 6.1015 17 1 2.1795 -2.0237 5.9670 18 6 1.3322 -0.6528 7.3667 19 7 0.7274 0.5035 7.5305 20 14 1.7169 -1.7240 8.8479 21 1 2.3964 -2.9653 8.3980 22 1 2.6064 -0.9824 9.7774 23 1 0.4541 -2.0755 9.5458 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.2583 -2.5904 -0.2380 28 1 3.0795 -3.7512 -2.2477 29 1 3.3156 -2.5240 -4.3692 30 1 2.7285 -0.1358 -4.4823 31 1 3.9187 0.2051 1.1591 32 1 3.8208 -1.3109 2.0863 33 1 3.8029 -1.3533 0.3068 34 1 2.0519 0.9347 2.5280 35 1 0.4722 0.1325 2.3564 36 1 1.3594 -1.8650 3.5273 37 1 2.9391 -1.0629 3.6989 38 1 1.8762 0.7509 5.0133 39 1 0.2962 -0.0508 4.8421 40 1 0.4807 0.7999 8.4207 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061559627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:04 Heat of formation + Delta-G solvation = 11.061052 kcal Electronic energy + Delta-G solvation = -19552.960255 eV Core-core repulsion = 16586.074670 eV Total energy + Delta-G solvation = -2966.885585 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.03807 -37.59185 -36.57903 -34.03688 -32.47383 -31.07068 -30.59029 -29.68748 -26.87191 -24.91148 -23.87855 -22.89722 -21.96686 -20.14532 -19.75530 -17.24849 -16.36892 -16.09684 -15.66635 -14.87766 -14.79284 -14.37623 -14.34163 -13.93200 -13.86746 -13.47996 -12.95013 -12.52953 -12.24869 -12.16864 -11.74501 -11.72403 -11.61693 -11.48314 -11.40899 -11.21282 -11.11624 -10.84078 -10.58902 -10.43264 -10.40130 -9.55759 -9.31271 -9.02676 -8.96577 -8.81135 -8.32289 -8.08944 -5.97483 -3.99308 0.98086 1.11334 1.99115 3.32666 3.40028 3.44384 3.45824 4.03404 4.48897 4.48952 4.70930 4.83894 5.09602 5.18673 5.28790 5.32757 5.38408 5.42768 5.53779 5.65759 5.73506 5.84025 5.87845 5.90963 6.03624 6.04982 6.14582 6.22156 6.24817 6.32143 6.42263 6.65500 6.72602 6.82055 7.14183 7.35040 7.39784 7.71615 7.86595 8.03358 8.46715 9.08211 9.64653 11.14017 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031416 B = 0.003269 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.046640 B = 8564.434633 C = 9145.629629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.115 3.885 3 H 0.055 0.945 4 C -0.063 4.063 5 C -0.084 4.084 6 C -0.121 4.121 7 C -0.115 4.115 8 C -0.116 4.116 9 C -0.035 4.035 10 Cl -0.072 7.072 11 N -0.535 5.535 12 C 0.014 3.986 13 C 0.052 3.948 14 C -0.103 4.103 15 C 0.021 3.979 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.148 0.852 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.021 0.979 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.013 0.987 39 H 0.015 0.985 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.410 -2.402 -23.630 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.006 3.994 3 H 0.072 0.928 4 C -0.065 4.065 5 C -0.103 4.103 6 C -0.139 4.139 7 C -0.133 4.133 8 C -0.135 4.135 9 C -0.062 4.062 10 Cl -0.043 7.043 11 N -0.259 5.259 12 C -0.134 4.134 13 C -0.074 4.074 14 C -0.141 4.141 15 C -0.016 4.016 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.165 0.835 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.040 0.960 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.105 -2.603 -23.502 23.848 hybrid contribution 0.526 0.536 0.839 1.126 sum 3.631 -2.067 -22.663 23.045 Atomic orbital electron populations 1.21863 0.92945 1.02965 1.02152 1.20566 0.96119 0.95140 0.87544 0.92754 1.19763 0.98817 0.94449 0.93431 1.21254 0.96494 0.93176 0.99338 1.21323 0.99505 1.00329 0.92757 1.21088 1.00210 0.93638 0.98344 1.20967 1.00213 0.95035 0.97241 1.20824 1.04242 0.85687 0.95411 1.98363 1.91966 1.15537 1.98438 1.62108 1.10162 1.52049 1.01612 1.22587 0.87701 1.00204 1.02951 1.22390 1.00360 0.95853 0.88837 1.21647 1.00160 0.98649 0.93682 1.19079 0.96412 0.95639 0.90499 1.21290 1.37997 1.04705 0.91514 0.92643 1.25031 0.95314 0.95137 0.99078 1.69983 1.41198 1.20076 1.22354 0.86552 0.78012 0.80652 0.82888 1.19726 1.21087 1.21033 0.92285 0.91555 0.91315 0.83465 0.85466 0.85443 0.85257 0.96041 0.90393 0.91474 0.95295 0.90613 0.92599 0.93453 0.96868 0.96614 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.97 37.16 0.33 -1.45 16 2 C 0.11 1.52 1.79 -68.86 -0.12 1.40 16 3 H 0.05 0.76 7.14 -51.93 -0.37 0.39 16 4 C -0.06 -0.76 4.31 -104.59 -0.45 -1.21 16 5 C -0.08 -0.94 7.33 -39.59 -0.29 -1.23 16 6 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 7 C -0.11 -0.97 10.05 -39.59 -0.40 -1.37 16 8 C -0.12 -1.09 9.83 -39.55 -0.39 -1.48 16 9 C -0.03 -0.39 6.31 -39.50 -0.25 -0.64 16 10 Cl -0.07 -0.80 27.13 -51.86 -1.41 -2.20 16 11 N -0.53 -7.91 3.77 -236.28 -0.89 -8.80 16 12 C 0.01 0.19 8.62 60.07 0.52 0.71 16 13 C 0.05 0.91 4.77 -3.83 -0.02 0.89 16 14 C -0.10 -2.14 5.08 -26.73 -0.14 -2.28 16 15 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 16 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 20 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H 0.06 0.68 7.86 -51.93 -0.41 0.27 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.90 6.20 -51.93 -0.32 0.58 16 27 H 0.15 1.71 6.85 -52.49 -0.36 1.36 16 28 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 1.13 6.30 -51.93 -0.33 0.80 16 33 H 0.07 0.83 5.31 -51.93 -0.28 0.55 16 34 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 35 H 0.08 1.31 5.83 -51.93 -0.30 1.00 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.05 0.97 6.47 -51.93 -0.34 0.63 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -30.07 332.71 -9.77 -39.84 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -6.05 Total: -2.88 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -2.15 Total: -21.32 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.15 Total: -35.25 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.41 Total: -2.20 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.07 -9.77 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061559627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.901 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds