Wall clock time and date at job start Tue Mar 31 2020 05:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46689 * 2 1 4 4 H 1.08996 * 109.46942 * 56.96473 * 3 2 1 5 5 C 1.50704 * 109.46851 * 176.96345 * 3 2 1 6 6 H 1.07998 * 119.99724 * 120.00083 * 5 3 2 7 7 C 1.37880 * 119.99788 * 299.99829 * 5 3 2 8 8 N 1.31510 * 119.99612 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00017 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.46995 * 90.00055 * 9 7 5 11 11 H 1.48506 * 109.46870 * 209.99622 * 9 7 5 12 12 H 1.48494 * 109.47280 * 329.99901 * 9 7 5 13 13 N 1.46904 * 109.47049 * 296.96087 * 3 2 1 14 14 C 1.46897 * 111.00187 * 319.54305 * 13 3 2 15 15 C 1.46898 * 110.99776 * 83.50262 * 13 3 2 16 16 H 1.09002 * 109.46713 * 303.69497 * 15 13 3 17 17 C 1.52994 * 109.47244 * 63.69365 * 15 13 3 18 18 C 1.50699 * 109.46683 * 183.69844 * 15 13 3 19 19 C 1.38238 * 119.98602 * 319.71997 * 18 15 13 20 20 C 1.38224 * 120.00945 * 179.72923 * 19 18 15 21 21 C 1.38353 * 119.98686 * 0.55230 * 20 19 18 22 22 Cl 1.73598 * 120.01145 * 179.74963 * 21 20 19 23 23 C 1.38353 * 119.97321 * 359.72148 * 21 20 19 24 24 C 1.38212 * 119.98603 * 0.02562 * 23 21 20 25 25 H 1.08996 * 109.47369 * 316.00341 * 1 2 3 26 26 H 1.09004 * 109.46976 * 76.00994 * 1 2 3 27 27 H 1.08998 * 109.46498 * 196.00469 * 1 2 3 28 28 H 1.09000 * 109.47113 * 240.00606 * 2 1 3 29 29 H 1.08994 * 109.47443 * 120.00032 * 2 1 3 30 30 H 0.97000 * 119.99905 * 179.97438 * 8 7 5 31 31 H 1.08992 * 109.47153 * 183.95387 * 14 13 3 32 32 H 1.09004 * 109.47487 * 303.95901 * 14 13 3 33 33 H 1.09008 * 109.46483 * 63.95488 * 14 13 3 34 34 H 1.08999 * 109.47531 * 293.67173 * 17 15 13 35 35 H 1.09000 * 109.47165 * 53.67388 * 17 15 13 36 36 H 1.09001 * 109.46788 * 173.66606 * 17 15 13 37 37 H 1.07999 * 119.99584 * 0.02562 * 19 18 15 38 38 H 1.08002 * 120.00334 * 180.27246 * 20 19 18 39 39 H 1.07999 * 120.00355 * 179.97438 * 23 21 20 40 40 H 1.08003 * 119.99381 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6328 1.9718 0.8615 5 6 3.5451 1.4433 0.0753 6 1 4.1250 1.8969 -0.7149 7 6 4.1817 0.8650 1.1529 8 7 5.4952 0.8652 1.2183 9 14 3.1785 0.0800 2.5192 10 1 2.9477 -1.3526 2.2034 11 1 3.9177 0.1911 3.8025 12 1 1.8729 0.7773 2.6380 13 7 1.6111 2.1136 -1.2345 14 6 1.7286 1.2147 -2.3904 15 6 0.2414 2.6286 -1.1052 16 1 -0.4297 1.8126 -0.8370 17 6 0.2008 3.7015 -0.0152 18 6 -0.1957 3.2281 -2.4169 19 6 0.6929 3.9790 -3.1636 20 6 0.2942 4.5244 -4.3694 21 6 -0.9978 4.3282 -4.8236 22 17 -1.5012 5.0183 -6.3349 23 6 -1.8884 3.5813 -4.0731 24 6 -1.4870 3.0321 -2.8700 25 1 -0.3634 0.7392 0.7138 26 1 -0.3633 0.2485 -0.9972 27 1 -0.3632 -0.9878 0.2833 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.9431 0.4586 1.9766 31 1 1.4719 1.7572 -3.3001 32 1 2.7525 0.8477 -2.4627 33 1 1.0486 0.3719 -2.2658 34 1 0.4076 3.2445 0.9525 35 1 0.9526 4.4621 -0.2259 36 1 -0.7868 4.1624 0.0042 37 1 1.7003 4.1355 -2.8070 38 1 0.9899 5.1073 -4.9548 39 1 -2.8972 3.4282 -4.4269 40 1 -2.1819 2.4487 -2.2842 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062014191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:50 Heat of formation + Delta-G solvation = 37.539091 kcal Electronic energy + Delta-G solvation = -20600.806902 eV Core-core repulsion = 17635.069491 eV Total energy + Delta-G solvation = -2965.737411 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.87290 -37.97817 -36.42488 -33.50252 -31.95952 -31.14350 -30.46452 -29.22241 -27.82000 -24.52741 -23.48760 -22.75876 -22.47637 -20.37925 -18.95968 -17.17096 -16.73059 -16.01491 -15.31300 -15.01756 -14.42912 -14.25302 -13.94895 -13.62691 -13.42506 -13.36198 -12.72754 -12.51944 -12.13793 -12.02468 -11.89247 -11.64870 -11.58876 -11.47865 -11.16221 -10.93002 -10.90268 -10.78624 -10.67990 -10.61723 -10.10118 -9.81398 -9.42388 -9.10929 -8.94980 -8.57708 -8.42569 -7.26977 -6.06763 -4.03778 1.20560 1.36691 2.11810 3.23243 3.33174 3.36185 3.69987 4.37911 4.62113 4.88760 4.93054 4.95114 5.21620 5.43651 5.46441 5.61219 5.63536 5.69570 5.75493 5.81092 5.87384 5.96687 6.03945 6.11035 6.19400 6.24001 6.28301 6.38640 6.40680 6.49374 6.57459 6.62354 6.71096 6.78157 6.85089 6.90665 7.14805 7.67201 7.92445 8.04745 8.66652 9.04334 9.55808 11.06586 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033339 B = 0.004339 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.657397 B = 6451.377190 C = 6769.355753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.165 4.165 3 C 0.185 3.815 4 H 0.043 0.957 5 C -0.496 4.496 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.881 3.119 10 H -0.281 1.281 11 H -0.297 1.297 12 H -0.268 1.268 13 N -0.511 5.511 14 C 0.025 3.975 15 C 0.090 3.910 16 H 0.066 0.934 17 C -0.138 4.138 18 C -0.058 4.058 19 C -0.078 4.078 20 C -0.116 4.116 21 C -0.042 4.042 22 Cl -0.085 7.085 23 C -0.115 4.115 24 C -0.111 4.111 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.263 0.737 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.021 0.979 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.146 0.854 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.860 4.645 -8.783 17.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.204 4.204 3 C 0.077 3.923 4 H 0.060 0.940 5 C -0.534 4.534 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.712 3.288 10 H -0.208 1.208 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.235 5.235 14 C -0.123 4.123 15 C -0.018 4.018 16 H 0.083 0.917 17 C -0.196 4.196 18 C -0.058 4.058 19 C -0.096 4.096 20 C -0.134 4.134 21 C -0.069 4.069 22 Cl -0.056 7.056 23 C -0.134 4.134 24 C -0.129 4.129 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.163 0.837 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.423 5.065 -8.880 17.678 hybrid contribution -1.020 -1.261 0.776 1.798 sum -15.443 3.803 -8.104 17.850 Atomic orbital electron populations 1.22202 0.98360 1.00415 1.00761 1.22677 0.93236 1.02590 1.01847 1.19905 0.96830 0.87538 0.87985 0.93956 1.20943 0.88475 1.36524 1.07454 0.90027 1.24913 0.94678 0.95951 0.97682 1.69874 1.07553 1.45458 1.30978 0.86960 0.80344 0.79781 0.81705 1.20800 1.22482 1.19274 1.62267 1.18400 1.37871 1.04939 1.22420 1.02057 0.94727 0.93122 1.21097 0.92554 0.97005 0.91131 0.91710 1.21835 1.00957 0.98668 0.98111 1.20135 0.93091 0.96228 0.96382 1.21216 1.00829 0.94865 0.92738 1.21112 0.94179 1.00974 0.97169 1.20891 0.95445 1.01443 0.89104 1.98348 1.91434 1.83813 1.32049 1.20906 0.99276 0.98289 0.94927 1.20986 0.96068 1.00270 0.95619 0.93032 0.92596 0.94028 0.91435 0.92997 0.92696 0.93037 0.90684 0.96105 0.91875 0.91471 0.93203 0.83670 0.85248 0.85498 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 8.04 37.16 0.30 -2.36 16 2 C -0.16 -3.37 4.38 -26.73 -0.12 -3.49 16 3 C 0.18 4.06 1.35 -68.86 -0.09 3.96 16 4 H 0.04 0.97 4.81 -51.93 -0.25 0.72 16 5 C -0.50 -13.30 8.85 -34.44 -0.30 -13.60 16 6 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 7 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 8 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 9 Si 0.88 21.32 24.40 -169.99 -4.15 17.17 16 10 H -0.28 -6.68 6.84 56.52 0.39 -6.29 16 11 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.27 -6.13 6.53 56.52 0.37 -5.77 16 13 N -0.51 -9.60 3.85 -229.68 -0.89 -10.49 16 14 C 0.02 0.44 7.69 60.06 0.46 0.90 16 15 C 0.09 1.41 1.89 -68.87 -0.13 1.28 16 16 H 0.07 0.99 3.63 -51.93 -0.19 0.80 16 17 C -0.14 -2.10 8.95 37.15 0.33 -1.77 16 18 C -0.06 -0.80 3.76 -104.62 -0.39 -1.20 16 19 C -0.08 -1.08 7.77 -39.59 -0.31 -1.39 16 20 C -0.12 -1.45 9.83 -39.54 -0.39 -1.83 16 21 C -0.04 -0.51 6.32 -39.50 -0.25 -0.76 16 22 Cl -0.09 -0.94 28.96 -51.86 -1.50 -2.44 16 23 C -0.12 -1.32 9.83 -39.55 -0.39 -1.71 16 24 C -0.11 -1.34 9.67 -39.59 -0.38 -1.72 16 25 H 0.05 0.83 7.43 -51.93 -0.39 0.45 16 26 H 0.06 0.85 4.99 -51.93 -0.26 0.59 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.38 6.25 -51.93 -0.32 1.06 16 29 H 0.05 1.15 3.22 -51.93 -0.17 0.99 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.05 0.83 5.80 -51.93 -0.30 0.53 16 32 H 0.07 1.48 7.69 -51.93 -0.40 1.08 16 33 H 0.02 0.35 5.04 -51.92 -0.26 0.09 16 34 H 0.06 1.03 6.40 -51.93 -0.33 0.70 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.15 2.17 7.72 -52.49 -0.41 1.77 16 38 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.13 1.31 8.04 -52.48 -0.42 0.89 16 LS Contribution 313.36 15.07 4.72 4.72 Total: -1.00 -28.20 313.36 -8.21 -36.41 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.42 Total: 2.67 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -1.76 Total: -21.86 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.11 Total: -36.66 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.15 Total: 17.17 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.20 -8.21 -36.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062014191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.952 kcal (2) G-P(sol) polarization free energy of solvation -28.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds