Wall clock time and date at job start Tue Mar 31 2020 05:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46689 * 2 1 4 4 H 1.08996 * 109.46942 * 56.96473 * 3 2 1 5 5 C 1.50704 * 109.46851 * 176.96345 * 3 2 1 6 6 H 1.07998 * 119.99724 * 120.00083 * 5 3 2 7 7 C 1.37880 * 119.99788 * 299.99829 * 5 3 2 8 8 N 1.31510 * 119.99612 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00017 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.46995 * 90.00055 * 9 7 5 11 11 H 1.48506 * 109.46870 * 209.99622 * 9 7 5 12 12 H 1.48494 * 109.47280 * 329.99901 * 9 7 5 13 13 N 1.46904 * 109.47049 * 296.96087 * 3 2 1 14 14 C 1.46897 * 111.00187 * 319.54305 * 13 3 2 15 15 C 1.46898 * 110.99776 * 83.50262 * 13 3 2 16 16 H 1.09002 * 109.46713 * 303.69497 * 15 13 3 17 17 C 1.52994 * 109.47244 * 63.69365 * 15 13 3 18 18 C 1.50699 * 109.46683 * 183.69844 * 15 13 3 19 19 C 1.38238 * 119.98602 * 319.71997 * 18 15 13 20 20 C 1.38224 * 120.00945 * 179.72923 * 19 18 15 21 21 C 1.38353 * 119.98686 * 0.55230 * 20 19 18 22 22 Cl 1.73598 * 120.01145 * 179.74963 * 21 20 19 23 23 C 1.38353 * 119.97321 * 359.72148 * 21 20 19 24 24 C 1.38212 * 119.98603 * 0.02562 * 23 21 20 25 25 H 1.08996 * 109.47369 * 316.00341 * 1 2 3 26 26 H 1.09004 * 109.46976 * 76.00994 * 1 2 3 27 27 H 1.08998 * 109.46498 * 196.00469 * 1 2 3 28 28 H 1.09000 * 109.47113 * 240.00606 * 2 1 3 29 29 H 1.08994 * 109.47443 * 120.00032 * 2 1 3 30 30 H 0.97000 * 119.99905 * 179.97438 * 8 7 5 31 31 H 1.08992 * 109.47153 * 183.95387 * 14 13 3 32 32 H 1.09004 * 109.47487 * 303.95901 * 14 13 3 33 33 H 1.09008 * 109.46483 * 63.95488 * 14 13 3 34 34 H 1.08999 * 109.47531 * 293.67173 * 17 15 13 35 35 H 1.09000 * 109.47165 * 53.67388 * 17 15 13 36 36 H 1.09001 * 109.46788 * 173.66606 * 17 15 13 37 37 H 1.07999 * 119.99584 * 0.02562 * 19 18 15 38 38 H 1.08002 * 120.00334 * 180.27246 * 20 19 18 39 39 H 1.07999 * 120.00355 * 179.97438 * 23 21 20 40 40 H 1.08003 * 119.99381 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6328 1.9718 0.8615 5 6 3.5451 1.4433 0.0753 6 1 4.1250 1.8969 -0.7149 7 6 4.1817 0.8650 1.1529 8 7 5.4952 0.8652 1.2183 9 14 3.1785 0.0800 2.5192 10 1 2.9477 -1.3526 2.2034 11 1 3.9177 0.1911 3.8025 12 1 1.8729 0.7773 2.6380 13 7 1.6111 2.1136 -1.2345 14 6 1.7286 1.2147 -2.3904 15 6 0.2414 2.6286 -1.1052 16 1 -0.4297 1.8126 -0.8370 17 6 0.2008 3.7015 -0.0152 18 6 -0.1957 3.2281 -2.4169 19 6 0.6929 3.9790 -3.1636 20 6 0.2942 4.5244 -4.3694 21 6 -0.9978 4.3282 -4.8236 22 17 -1.5012 5.0183 -6.3349 23 6 -1.8884 3.5813 -4.0731 24 6 -1.4870 3.0321 -2.8700 25 1 -0.3634 0.7392 0.7138 26 1 -0.3633 0.2485 -0.9972 27 1 -0.3632 -0.9878 0.2833 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.9431 0.4586 1.9766 31 1 1.4719 1.7572 -3.3001 32 1 2.7525 0.8477 -2.4627 33 1 1.0486 0.3719 -2.2658 34 1 0.4076 3.2445 0.9525 35 1 0.9526 4.4621 -0.2259 36 1 -0.7868 4.1624 0.0042 37 1 1.7003 4.1355 -2.8070 38 1 0.9899 5.1073 -4.9548 39 1 -2.8972 3.4282 -4.4269 40 1 -2.1819 2.4487 -2.2842 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062014191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:49 Heat of formation + Delta-G solvation = 21.477656 kcal Electronic energy + Delta-G solvation = -20601.503378 eV Core-core repulsion = 17635.069491 eV Total energy + Delta-G solvation = -2966.433887 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.04162 -39.26423 -37.37478 -35.09802 -33.76908 -32.24342 -31.69039 -30.37052 -29.55465 -26.02549 -24.97832 -23.89034 -23.70495 -21.72915 -20.43468 -18.83576 -18.01288 -17.45646 -16.68076 -16.24614 -15.90516 -15.67091 -15.31571 -14.98109 -14.50341 -14.38478 -14.32380 -13.85100 -13.67884 -13.37165 -13.30688 -13.07360 -12.86694 -12.64992 -12.49551 -12.38906 -12.37706 -12.12765 -11.92892 -11.74349 -11.61356 -11.56111 -11.08396 -11.02600 -10.69192 -9.90679 -9.43441 -8.73892 -8.23522 -6.24205 0.22013 0.41507 1.20178 1.30668 1.35910 1.45770 2.34294 2.70912 3.10349 3.27727 3.80146 3.94030 4.03837 4.20235 4.30626 4.36336 4.39734 4.43034 4.52279 4.57957 4.60169 4.73606 4.80197 4.88677 4.94400 5.00582 5.03931 5.07736 5.11082 5.22329 5.29148 5.31686 5.36072 5.40628 5.54016 5.70715 5.72064 5.91129 6.14004 6.52615 6.78752 6.83136 7.39983 8.93893 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033339 B = 0.004339 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.657397 B = 6451.377190 C = 6769.355753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.165 4.165 3 C 0.191 3.809 4 H 0.041 0.959 5 C -0.494 4.494 6 H 0.034 0.966 7 C 0.010 3.990 8 N -0.953 5.953 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.303 1.303 12 H -0.243 1.243 13 N -0.527 5.527 14 C 0.034 3.966 15 C 0.093 3.907 16 H 0.080 0.920 17 C -0.137 4.137 18 C -0.069 4.069 19 C -0.091 4.091 20 C -0.119 4.119 21 C -0.047 4.047 22 Cl -0.076 7.076 23 C -0.110 4.110 24 C -0.104 4.104 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.263 0.737 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.034 0.966 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.137 0.863 39 H 0.152 0.848 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.865 4.235 -9.047 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.204 4.204 3 C 0.083 3.917 4 H 0.059 0.941 5 C -0.533 4.533 6 H 0.052 0.948 7 C -0.187 4.187 8 N -0.594 5.594 9 Si 0.773 3.227 10 H -0.198 1.198 11 H -0.231 1.231 12 H -0.167 1.167 13 N -0.251 5.251 14 C -0.114 4.114 15 C -0.014 4.014 16 H 0.097 0.903 17 C -0.194 4.194 18 C -0.070 4.070 19 C -0.110 4.110 20 C -0.138 4.138 21 C -0.073 4.073 22 Cl -0.047 7.047 23 C -0.128 4.128 24 C -0.122 4.122 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.141 0.859 38 H 0.155 0.845 39 H 0.170 0.830 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.459 4.667 -9.169 21.133 hybrid contribution 0.255 -1.020 0.695 1.260 sum -18.204 3.647 -8.474 20.408 Atomic orbital electron populations 1.22122 0.94676 1.02048 1.02139 1.22556 0.96523 1.00530 1.00763 1.19633 0.93364 0.89187 0.89488 0.94108 1.21249 0.91411 1.34880 1.05735 0.94794 1.25746 0.95561 0.96847 1.00503 1.70047 1.09705 1.47552 1.32140 0.85910 0.79589 0.79359 0.77859 1.19793 1.23114 1.16664 1.62079 1.21394 1.37782 1.03810 1.22297 1.00391 0.95191 0.93487 1.21127 0.90502 0.97345 0.92434 0.90293 1.21829 1.02077 0.98232 0.97288 1.20008 0.94132 0.97052 0.95789 1.21064 1.00160 0.96081 0.93695 1.21175 0.94875 1.00952 0.96775 1.21030 0.95339 1.01373 0.89573 1.98355 1.91251 1.83671 1.31405 1.21197 1.00166 0.97122 0.94361 1.21194 0.95350 0.99883 0.95822 0.92220 0.90955 0.91999 0.92139 0.94563 0.92828 0.91468 0.93943 0.94727 0.93100 0.93138 0.90363 0.85873 0.84497 0.83044 0.83143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 8.04 71.98 0.58 -3.87 16 2 C -0.16 -6.45 4.38 30.60 0.13 -6.32 16 3 C 0.19 8.36 1.35 44.17 0.06 8.42 16 4 H 0.04 1.82 4.81 -2.39 -0.01 1.81 16 5 C -0.49 -27.63 8.85 25.60 0.23 -27.40 16 6 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 7 C 0.01 0.56 5.45 84.66 0.46 1.02 16 8 N -0.95 -59.70 13.96 21.45 0.30 -59.40 16 9 Si 0.95 44.26 24.40 68.60 1.67 45.93 16 10 H -0.27 -12.22 6.84 99.48 0.68 -11.54 16 11 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 12 H -0.24 -10.29 6.53 99.48 0.65 -9.64 16 13 N -0.53 -19.69 3.85 -880.58 -3.39 -23.09 16 14 C 0.03 1.21 7.69 127.69 0.98 2.19 16 15 C 0.09 2.72 1.89 44.17 0.08 2.80 16 16 H 0.08 2.10 3.63 -2.39 -0.01 2.09 16 17 C -0.14 -3.93 8.95 71.98 0.64 -3.29 16 18 C -0.07 -1.76 3.76 -19.86 -0.07 -1.84 16 19 C -0.09 -2.47 7.77 22.27 0.17 -2.29 16 20 C -0.12 -2.82 9.83 22.29 0.22 -2.60 16 21 C -0.05 -1.00 6.32 22.32 0.14 -0.86 16 22 Cl -0.08 -1.49 28.96 -2.72 -0.08 -1.57 16 23 C -0.11 -2.10 9.83 22.29 0.22 -1.88 16 24 C -0.10 -2.10 9.67 22.27 0.22 -1.89 16 25 H 0.06 1.66 7.43 -2.39 -0.02 1.64 16 26 H 0.07 1.87 4.99 -2.39 -0.01 1.85 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 2.42 6.25 -2.39 -0.01 2.40 16 29 H 0.04 1.53 3.22 -2.39 -0.01 1.52 16 30 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 31 H 0.07 2.13 5.80 -2.39 -0.01 2.12 16 32 H 0.04 1.74 7.69 -2.39 -0.02 1.72 16 33 H 0.03 1.11 5.04 -2.38 -0.01 1.09 16 34 H 0.05 1.57 6.40 -2.39 -0.02 1.55 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.12 3.83 7.72 -2.91 -0.02 3.81 16 38 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 39 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.15 2.31 8.04 -2.91 -0.02 2.29 16 Total: -1.00 -63.60 313.36 3.52 -60.07 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.96 Total: 15.85 kcal Atomic # 6 Polarization: -41.87 SS G_CDS: 4.06 Total: -37.81 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -3.09 Total: -82.49 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.67 Total: 45.93 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -63.60 3.52 -60.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062014191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.551 kcal (2) G-P(sol) polarization free energy of solvation -63.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds