Wall clock time and date at job start Tue Mar 31 2020 05:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47107 * 2 1 4 4 H 1.09001 * 109.47347 * 302.57248 * 3 2 1 5 5 C 1.50707 * 109.47206 * 182.57075 * 3 2 1 6 6 H 1.07997 * 119.99669 * 239.99838 * 5 3 2 7 7 C 1.37877 * 119.99729 * 60.00239 * 5 3 2 8 8 N 1.31512 * 120.00147 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99621 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47285 * 89.99940 * 9 7 5 11 11 H 1.48500 * 109.47029 * 210.00007 * 9 7 5 12 12 H 1.48497 * 109.47243 * 329.99784 * 9 7 5 13 13 N 1.46907 * 109.47203 * 62.57259 * 3 2 1 14 14 C 1.46893 * 110.99720 * 64.36974 * 13 3 2 15 15 C 1.46894 * 110.99978 * 188.32846 * 13 3 2 16 16 H 1.09002 * 109.47042 * 297.87997 * 15 13 3 17 17 C 1.52995 * 109.47823 * 57.88275 * 15 13 3 18 18 C 1.50708 * 109.46888 * 177.88324 * 15 13 3 19 19 C 1.38232 * 119.98474 * 319.72472 * 18 15 13 20 20 C 1.38220 * 120.01548 * 179.72648 * 19 18 15 21 21 C 1.38361 * 119.98037 * 0.54882 * 20 19 18 22 22 Cl 1.73602 * 120.01181 * 179.70418 * 21 20 19 23 23 C 1.38349 * 119.97439 * 359.72073 * 21 20 19 24 24 C 1.38215 * 119.98647 * 0.02562 * 23 21 20 25 25 H 1.09007 * 109.46560 * 304.30734 * 1 2 3 26 26 H 1.09001 * 109.47212 * 64.30290 * 1 2 3 27 27 H 1.09001 * 109.46975 * 184.31247 * 1 2 3 28 28 H 1.09004 * 109.46810 * 240.00688 * 2 1 3 29 29 H 1.08998 * 109.47446 * 120.00433 * 2 1 3 30 30 H 0.96998 * 120.00261 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.46908 * 183.95729 * 14 13 3 32 32 H 1.09001 * 109.47550 * 63.95587 * 14 13 3 33 33 H 1.09000 * 109.47379 * 303.95635 * 14 13 3 34 34 H 1.08993 * 109.47815 * 172.70176 * 17 15 13 35 35 H 1.09000 * 109.46756 * 292.70307 * 17 15 13 36 36 H 1.09006 * 109.47037 * 52.69688 * 17 15 13 37 37 H 1.08004 * 119.99678 * 359.97438 * 19 18 15 38 38 H 1.07997 * 120.01003 * 180.26842 * 20 19 18 39 39 H 1.08000 * 120.00913 * 179.97438 * 23 21 20 40 40 H 1.08008 * 119.99393 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6395 1.9695 -0.8660 5 6 3.5457 1.4430 -0.0637 6 1 4.1196 1.8987 0.7296 7 6 4.1905 0.8617 -1.1349 8 7 3.4916 0.3074 -2.1012 9 14 6.0568 0.8617 -1.2135 10 1 6.5801 -0.3612 -0.5535 11 1 6.4925 0.8830 -2.6330 12 1 6.5816 2.0634 -0.5166 13 7 1.6018 2.1168 1.2294 14 6 2.2071 1.4957 2.4149 15 6 1.9013 3.5539 1.1769 16 1 2.9792 3.6979 1.1017 17 6 1.2177 4.1734 -0.0436 18 6 1.3919 4.2193 2.4295 19 6 0.1712 3.8482 2.9614 20 6 -0.2941 4.4540 4.1133 21 6 0.4573 5.4401 4.7278 22 17 -0.1298 6.2069 6.1704 23 6 1.6764 5.8149 4.1919 24 6 2.1429 5.2047 3.0429 25 1 -0.3633 0.5793 0.8490 26 1 -0.3634 0.4456 -0.9260 27 1 -0.3633 -1.0248 0.0773 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.9453 -0.1019 -2.8546 31 1 1.8121 1.9681 3.3143 32 1 3.2888 1.6261 2.3812 33 1 1.9698 0.4319 2.4290 34 1 1.3308 5.2570 -0.0126 35 1 1.6772 3.7860 -0.9530 36 1 0.1580 3.9182 -0.0350 37 1 -0.4175 3.0819 2.4789 38 1 -1.2458 4.1610 4.5312 39 1 2.2632 6.5848 4.6708 40 1 3.0949 5.4969 2.6246 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062014192.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:52 Heat of formation + Delta-G solvation = 14.895073 kcal Electronic energy + Delta-G solvation = -20451.013049 eV Core-core repulsion = 17484.293719 eV Total energy + Delta-G solvation = -2966.719330 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.54841 -37.43895 -36.29710 -33.52695 -31.77432 -30.92033 -30.30149 -28.99822 -26.72277 -24.32184 -23.57596 -22.70330 -22.27068 -20.08112 -18.71576 -16.96975 -16.24403 -15.71179 -15.24723 -14.86151 -14.31763 -13.90688 -13.69829 -13.36132 -13.26198 -12.90676 -12.54099 -12.48393 -12.17839 -11.67672 -11.50111 -11.39891 -11.33307 -11.14842 -10.90806 -10.81644 -10.74249 -10.65031 -10.54493 -10.28380 -9.91858 -9.70335 -9.46671 -9.06091 -8.86383 -8.38414 -8.31440 -7.17782 -6.01872 -4.14694 1.32263 1.46942 2.19207 3.23959 3.31803 3.33941 3.81828 4.36819 4.84030 5.00303 5.06330 5.17824 5.24363 5.57050 5.60429 5.80921 5.95889 6.03447 6.12149 6.15773 6.26271 6.37172 6.38135 6.43953 6.45072 6.52524 6.63928 6.69190 6.78250 6.81994 6.92135 7.01541 7.10258 7.17600 7.34151 7.59974 7.74142 7.95462 8.12997 8.27545 8.44025 8.94919 9.52848 10.97449 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024733 B = 0.004506 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.831563 B = 6212.306292 C = 6791.587073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.210 3.790 4 H 0.047 0.953 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.529 5.529 14 C 0.031 3.969 15 C 0.121 3.879 16 H 0.055 0.945 17 C -0.135 4.135 18 C -0.054 4.054 19 C -0.080 4.080 20 C -0.118 4.118 21 C -0.045 4.045 22 Cl -0.088 7.088 23 C -0.115 4.115 24 C -0.110 4.110 25 H 0.049 0.951 26 H 0.037 0.963 27 H 0.024 0.976 28 H 0.091 0.909 29 H 0.032 0.968 30 H 0.261 0.739 31 H 0.041 0.959 32 H 0.028 0.972 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 8.150 9.735 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C 0.104 3.896 4 H 0.064 0.936 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.253 5.253 14 C -0.117 4.117 15 C 0.012 3.988 16 H 0.073 0.927 17 C -0.192 4.192 18 C -0.054 4.054 19 C -0.098 4.098 20 C -0.136 4.136 21 C -0.071 4.071 22 Cl -0.059 7.059 23 C -0.134 4.134 24 C -0.128 4.128 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.109 0.891 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.159 0.841 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.512 8.063 9.702 14.197 hybrid contribution 2.038 0.064 0.045 2.040 sum -4.474 8.127 9.747 13.456 Atomic orbital electron populations 1.21724 0.98902 0.98477 1.00547 1.21609 0.92158 0.99219 1.01982 1.19359 0.92648 0.90963 0.86609 0.93558 1.21717 0.92766 1.37475 1.06225 0.92654 1.24877 0.97773 0.95064 0.95547 1.69865 1.34925 1.37654 1.09868 0.86718 0.86435 0.78373 0.77206 1.20745 1.21215 1.20121 1.62568 1.57796 1.00205 1.04763 1.22214 0.97657 0.99447 0.92423 1.20404 0.98052 0.89782 0.90515 0.92723 1.21787 1.00842 0.98628 0.97968 1.20296 0.94027 0.94693 0.96434 1.21117 0.95783 0.98677 0.94251 1.21072 1.00009 0.96069 0.96472 1.20862 0.96542 0.98900 0.90833 1.98340 1.88583 1.81009 1.38009 1.20918 0.94737 1.00932 0.96769 1.21056 1.00122 0.96636 0.95021 0.93149 0.94347 0.95697 0.89075 0.94887 0.92904 0.94027 0.95316 0.92007 0.93592 0.90985 0.92470 0.84101 0.85491 0.85578 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.84 37.16 0.37 -2.32 16 2 C -0.11 -2.52 5.07 -26.73 -0.14 -2.65 16 3 C 0.21 4.80 1.50 -68.86 -0.10 4.70 16 4 H 0.05 1.16 5.99 -51.93 -0.31 0.85 16 5 C -0.54 -13.75 7.15 -34.44 -0.25 -14.00 16 6 H 0.06 1.43 5.82 -52.49 -0.31 1.12 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -23.98 11.30 55.43 0.63 -23.36 16 9 Si 0.88 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 13 N -0.53 -10.20 3.19 -229.69 -0.73 -10.93 16 14 C 0.03 0.59 8.51 60.06 0.51 1.10 16 15 C 0.12 2.15 2.04 -68.87 -0.14 2.01 16 16 H 0.05 1.08 6.93 -51.93 -0.36 0.72 16 17 C -0.13 -2.28 8.65 37.15 0.32 -1.96 16 18 C -0.05 -0.82 3.77 -104.62 -0.39 -1.21 16 19 C -0.08 -1.14 8.25 -39.59 -0.33 -1.47 16 20 C -0.12 -1.52 9.83 -39.54 -0.39 -1.91 16 21 C -0.04 -0.58 6.32 -39.50 -0.25 -0.83 16 22 Cl -0.09 -1.02 28.96 -51.86 -1.50 -2.53 16 23 C -0.11 -1.46 9.83 -39.55 -0.39 -1.85 16 24 C -0.11 -1.52 9.67 -39.59 -0.38 -1.90 16 25 H 0.05 0.92 7.56 -51.93 -0.39 0.53 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 2.33 6.01 -51.93 -0.31 2.02 16 29 H 0.03 0.74 6.30 -51.93 -0.33 0.42 16 30 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.04 0.71 6.31 -51.93 -0.33 0.38 16 32 H 0.03 0.59 6.36 -51.93 -0.33 0.26 16 33 H 0.06 1.19 6.19 -51.93 -0.32 0.87 16 34 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 35 H 0.07 1.38 6.61 -51.93 -0.34 1.03 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.14 2.05 7.73 -52.48 -0.41 1.65 16 38 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.13 1.62 8.04 -52.48 -0.42 1.20 16 LS Contribution 326.87 15.07 4.93 4.93 Total: -1.00 -25.57 326.87 -9.19 -34.76 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.83 Total: 2.14 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -1.65 Total: -20.55 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: -0.11 Total: -34.29 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.50 Total: -2.53 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -25.57 -9.19 -34.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062014192.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.652 kcal (2) G-P(sol) polarization free energy of solvation -25.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds