Wall clock time and date at job start Tue Mar 31 2020 05:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47241 * 2 1 4 4 C 1.53010 * 109.46958 * 119.99645 * 2 1 3 5 5 C 1.50704 * 109.47074 * 294.87156 * 4 2 1 6 6 C 1.38239 * 119.98512 * 275.37164 * 5 4 2 7 7 C 1.38217 * 120.01246 * 180.28092 * 6 5 4 8 8 C 1.38356 * 119.98421 * 359.97438 * 7 6 5 9 9 Cl 1.73595 * 120.01132 * 179.97438 * 8 7 6 10 10 C 1.38348 * 119.97313 * 359.97438 * 8 7 6 11 11 C 1.38218 * 119.99209 * 0.02562 * 10 8 7 12 12 N 1.46901 * 109.47596 * 239.99649 * 2 1 3 13 13 C 1.46895 * 111.00198 * 186.21735 * 12 2 1 14 14 C 1.46893 * 110.99797 * 62.25986 * 12 2 1 15 15 C 1.53004 * 109.47382 * 190.00389 * 14 12 2 16 16 C 1.50698 * 109.47498 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99785 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00097 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99925 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00196 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46778 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47133 * 119.99692 * 20 18 16 23 23 H 1.48496 * 109.46889 * 239.99945 * 20 18 16 24 24 H 1.08999 * 109.47297 * 299.99971 * 1 2 3 25 25 H 1.08993 * 109.46953 * 60.00237 * 1 2 3 26 26 H 1.08996 * 109.47188 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47094 * 174.87415 * 4 2 1 28 28 H 1.08993 * 109.46861 * 54.87668 * 4 2 1 29 29 H 1.08002 * 119.99565 * 0.27324 * 6 5 4 30 30 H 1.07999 * 120.00745 * 180.02562 * 7 6 5 31 31 H 1.08007 * 120.00560 * 180.02562 * 10 8 7 32 32 H 1.07997 * 120.00006 * 179.97438 * 11 10 8 33 33 H 1.08998 * 109.47567 * 66.35815 * 13 12 2 34 34 H 1.09005 * 109.46921 * 186.35528 * 13 12 2 35 35 H 1.08998 * 109.47574 * 306.35409 * 13 12 2 36 36 H 1.09002 * 109.47345 * 310.00104 * 14 12 2 37 37 H 1.08999 * 109.47221 * 70.00404 * 14 12 2 38 38 H 1.09002 * 109.46648 * 300.00142 * 15 14 12 39 39 H 1.08999 * 109.46930 * 59.99837 * 15 14 12 40 40 H 0.97005 * 119.99506 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6440 0.0588 2.4765 6 6 2.4321 1.1074 2.9127 7 6 2.0725 1.8195 4.0415 8 6 0.9233 1.4829 4.7344 9 17 0.4714 2.3764 6.1525 10 6 0.1345 0.4341 4.2967 11 6 0.4950 -0.2773 3.1678 12 7 2.0198 -0.6925 -1.1994 13 6 3.4806 -0.8421 -1.1613 14 6 1.5935 0.0040 -2.4204 15 6 1.9019 -0.8680 -3.6392 16 6 1.4651 -0.1532 -4.8919 17 1 1.0131 0.8255 -4.8254 18 6 1.6425 -0.7485 -6.1227 19 7 2.1934 -1.9400 -6.2036 20 14 1.1018 0.1379 -7.6756 21 1 0.5159 1.4541 -7.3157 22 1 2.2751 0.3436 -8.5622 23 1 0.0839 -0.6797 -8.3832 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1261 -0.8014 1.2047 28 1 1.6036 -1.7189 1.2965 29 1 3.3290 1.3703 2.3716 30 1 2.6881 2.6390 4.3820 31 1 -0.7630 0.1711 4.8370 32 1 -0.1205 -1.0964 2.8262 33 1 3.7560 -1.5145 -0.3489 34 1 3.8283 -1.2549 -2.1083 35 1 3.9415 0.1322 -0.9986 36 1 0.5216 0.1966 -2.3734 37 1 2.1292 0.9494 -2.5052 38 1 2.9737 -1.0607 -3.6861 39 1 1.3662 -1.8135 -3.5543 40 1 2.3185 -2.3586 -7.0697 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076732851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:38 Heat of formation + Delta-G solvation = 6.253387 kcal Electronic energy + Delta-G solvation = -19234.954312 eV Core-core repulsion = 16267.860251 eV Total energy + Delta-G solvation = -2967.094061 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.84337 -37.88711 -36.67250 -33.86716 -32.59096 -31.31679 -30.27025 -29.38679 -26.90903 -25.17895 -23.88572 -23.04999 -21.91931 -20.31009 -19.42237 -17.33008 -16.52781 -15.83205 -15.74379 -15.14494 -14.64084 -14.32552 -14.21691 -13.79165 -13.66876 -13.44004 -13.37143 -12.58349 -12.34199 -12.12385 -11.95466 -11.78167 -11.60332 -11.38042 -11.16593 -11.12704 -11.04231 -10.96124 -10.82213 -10.51421 -10.40974 -9.76189 -9.37322 -9.26217 -9.09710 -8.69602 -8.32866 -7.71479 -5.99715 -4.01862 0.91919 1.06487 1.89586 3.30899 3.38266 3.39087 3.42393 4.29727 4.49508 4.53079 4.64981 4.86503 5.00193 5.10120 5.17366 5.25814 5.36244 5.42541 5.59006 5.66423 5.72112 5.83590 5.91692 5.94301 5.99150 6.00278 6.06958 6.21751 6.28760 6.38620 6.44827 6.50161 6.57042 6.60949 7.01117 7.51018 7.58541 7.80927 7.91074 8.08967 8.44127 9.05727 9.61817 11.11664 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.040508 B = 0.002709 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.056133 B =10332.334816 C =10546.667812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.087 3.913 3 H 0.034 0.966 4 C -0.081 4.081 5 C -0.063 4.063 6 C -0.106 4.106 7 C -0.109 4.109 8 C -0.043 4.043 9 Cl -0.079 7.079 10 C -0.109 4.109 11 C -0.102 4.102 12 N -0.538 5.538 13 C 0.021 3.979 14 C 0.060 3.940 15 C 0.028 3.972 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.016 0.984 36 H 0.065 0.935 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.024 0.976 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.079 5.026 22.760 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 H 0.052 0.948 4 C -0.119 4.119 5 C -0.064 4.064 6 C -0.124 4.124 7 C -0.127 4.127 8 C -0.070 4.070 9 Cl -0.050 7.050 10 C -0.128 4.128 11 C -0.120 4.120 12 N -0.262 5.262 13 C -0.127 4.127 14 C -0.067 4.067 15 C -0.009 4.009 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.034 0.966 36 H 0.084 0.916 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.043 0.957 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.279 4.509 22.749 23.226 hybrid contribution 0.075 1.389 -0.780 1.594 sum -1.203 5.898 21.969 22.779 Atomic orbital electron populations 1.21922 0.94514 1.02531 1.01469 1.21531 0.95856 0.95014 0.89728 0.94810 1.20828 1.01771 0.98887 0.90410 1.20082 0.94350 0.95654 0.96308 1.21054 1.00197 0.95306 0.95883 1.21028 0.95692 1.00480 0.95545 1.20906 0.97674 0.96863 0.91532 1.98363 1.92459 1.74823 1.39385 1.21051 0.99708 0.94813 0.97243 1.21105 0.96554 0.99959 0.94384 1.62143 1.11134 1.51058 1.01887 1.22454 0.88115 0.99141 1.03030 1.22403 0.99376 0.95566 0.89335 1.19108 0.97046 0.95194 0.89590 1.21233 1.40093 1.03246 0.91376 0.92806 1.24993 0.95330 0.94929 0.99096 1.69986 1.44006 1.14730 1.24521 0.86553 0.78344 0.79812 0.83393 1.19787 1.21049 1.20982 0.92775 0.92050 0.91802 0.90359 0.89862 0.85192 0.85145 0.85082 0.84860 0.92241 0.90167 0.96586 0.91643 0.96432 0.96479 0.95735 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.71 37.16 0.32 -1.67 16 2 C 0.09 1.24 2.12 -67.71 -0.14 1.09 16 3 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.08 -0.93 4.56 -27.88 -0.13 -1.06 16 5 C -0.06 -0.66 4.55 -104.62 -0.48 -1.13 16 6 C -0.11 -1.05 9.72 -39.59 -0.38 -1.44 16 7 C -0.11 -1.03 9.83 -39.55 -0.39 -1.42 16 8 C -0.04 -0.42 6.32 -39.50 -0.25 -0.67 16 9 Cl -0.08 -0.73 28.96 -51.86 -1.50 -2.23 16 10 C -0.11 -1.02 9.83 -39.55 -0.39 -1.41 16 11 C -0.10 -0.98 8.40 -39.59 -0.33 -1.31 16 12 N -0.54 -9.45 4.63 -234.89 -1.09 -10.54 16 13 C 0.02 0.34 8.74 60.06 0.53 0.86 16 14 C 0.06 1.25 4.74 -3.83 -0.02 1.23 16 15 C 0.03 0.72 4.92 -27.88 -0.14 0.58 16 16 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 17 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 20 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H 0.05 0.64 6.55 -51.93 -0.34 0.30 16 25 H 0.06 0.91 6.25 -51.93 -0.32 0.59 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 0.87 6.15 -51.93 -0.32 0.55 16 28 H 0.08 0.95 8.05 -51.93 -0.42 0.54 16 29 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 32 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.06 0.81 6.50 -51.93 -0.34 0.48 16 34 H 0.08 1.48 6.07 -51.93 -0.32 1.17 16 35 H 0.02 0.24 8.12 -51.93 -0.42 -0.18 16 36 H 0.07 1.35 5.91 -51.93 -0.31 1.05 16 37 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 38 H 0.02 0.46 6.36 -51.93 -0.33 0.13 16 39 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -29.86 335.52 -10.06 -39.92 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -6.04 Total: -2.92 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -2.21 Total: -19.82 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.35 Total: -36.62 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.86 -10.06 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076732851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.177 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds