Wall clock time and date at job start Tue Mar 31 2020 05:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 119.99744 * 2 1 4 4 H 1.08005 * 120.00086 * 213.18542 * 3 2 1 5 5 C 1.38820 * 120.00117 * 33.19396 * 3 2 1 6 6 N 1.31620 * 119.99878 * 5.81148 * 5 3 2 7 7 Si 1.86795 * 119.99963 * 185.81410 * 5 3 2 8 8 H 1.48506 * 109.47234 * 89.99670 * 7 5 3 9 9 H 1.48497 * 109.47278 * 209.99931 * 7 5 3 10 10 H 1.48496 * 109.47234 * 329.99785 * 7 5 3 11 11 C 1.46500 * 120.00234 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47302 * 270.00342 * 11 2 1 13 13 C 1.50701 * 109.46925 * 179.97438 * 12 11 2 14 14 O 1.21284 * 120.00365 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99845 * 179.97438 * 13 12 11 16 16 C 1.40039 * 120.00290 * 176.29427 * 15 13 12 17 17 C 1.38727 * 120.03448 * 34.16632 * 16 15 13 18 18 C 1.38775 * 119.87814 * 179.79194 * 17 16 15 19 19 N 1.39816 * 120.01468 * 180.20746 * 18 17 16 20 20 C 1.38920 * 119.96233 * 0.48966 * 18 17 16 21 21 C 1.38187 * 120.08351 * 359.73852 * 20 18 17 22 22 C 1.38324 * 120.11393 * 0.03055 * 21 20 18 23 23 F 1.35107 * 119.97840 * 179.97438 * 22 21 20 24 24 H 1.09011 * 109.47049 * 265.10279 * 1 2 3 25 25 H 1.08990 * 109.47620 * 25.10608 * 1 2 3 26 26 H 1.09000 * 109.47107 * 145.11115 * 1 2 3 27 27 H 0.96996 * 119.99835 * 180.02562 * 6 5 3 28 28 H 1.08997 * 109.47225 * 149.99517 * 11 2 1 29 29 H 1.09002 * 109.46749 * 30.00288 * 11 2 1 30 30 H 1.08993 * 109.47221 * 59.99652 * 12 11 2 31 31 H 1.09002 * 109.47175 * 299.99686 * 12 11 2 32 32 H 0.97005 * 120.00028 * 356.29809 * 15 13 12 33 33 H 1.08001 * 120.06246 * 0.02562 * 17 16 15 34 34 H 0.97006 * 119.99298 * 180.27332 * 19 18 17 35 35 H 0.96992 * 120.00317 * 0.27954 * 19 18 17 36 36 H 1.07999 * 119.96372 * 179.72565 * 20 18 17 37 37 H 1.08001 * 119.94558 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.0975 1.2622 -0.5120 5 6 1.6254 2.2900 0.6582 6 7 0.5296 2.1685 1.3772 7 14 2.4750 3.9481 0.5233 8 1 1.9270 4.6920 -0.6393 9 1 2.2397 4.7274 1.7652 10 1 3.9338 3.7431 0.3366 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 6 3.2055 -3.0152 1.4437 14 8 3.5089 -3.5408 0.3936 15 7 3.5428 -3.5981 2.6111 16 6 4.1735 -4.8484 2.6130 17 6 5.0594 -5.1807 1.5985 18 6 5.6860 -6.4190 1.6059 19 7 6.5826 -6.7552 0.5871 20 6 5.4173 -7.3264 2.6228 21 6 4.5310 -6.9956 3.6301 22 6 3.9082 -5.7605 3.6286 23 9 3.0418 -5.4401 4.6144 24 1 -0.3634 -0.0877 1.0240 25 1 -0.3634 0.9305 -0.4360 26 1 -0.3633 -0.8430 -0.5878 27 1 0.1632 2.9401 1.8368 28 1 3.1499 -1.1386 -0.5134 29 1 1.6085 -2.0286 -0.5130 30 1 1.5002 -1.8399 1.9571 31 1 3.0416 -0.9499 1.9568 32 1 3.3486 -3.1516 3.4501 33 1 5.2640 -4.4757 0.8064 34 1 7.0174 -7.6224 0.5905 35 1 6.7700 -6.1214 -0.1228 36 1 5.9015 -8.2918 2.6262 37 1 4.3240 -7.7026 4.4198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083169980.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:38 Heat of formation + Delta-G solvation = -34.512260 kcal Electronic energy + Delta-G solvation = -21374.228821 eV Core-core repulsion = 17873.490310 eV Total energy + Delta-G solvation = -3500.738511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.71227 -40.31369 -38.64244 -35.72594 -35.15055 -33.68148 -31.97937 -30.43020 -29.12457 -28.10881 -25.84703 -24.57089 -23.15686 -22.02092 -20.78294 -19.87170 -18.10808 -17.42724 -17.28981 -16.83387 -16.31361 -15.73273 -15.57597 -15.10359 -14.84303 -14.69881 -14.03933 -13.71520 -13.54760 -13.11799 -12.99228 -12.86553 -12.77499 -12.31559 -12.06930 -11.58405 -11.19140 -10.94047 -10.88261 -10.81664 -10.50226 -10.12193 -10.04269 -10.01055 -9.80590 -9.48651 -8.54064 -8.37030 -7.55077 -6.65064 -5.78563 -3.32386 1.15245 1.30120 2.85333 3.11539 3.36374 3.42828 3.44160 3.65165 3.71231 4.33846 4.47406 4.67813 5.00645 5.05941 5.29776 5.39937 5.43480 5.66255 5.79054 5.87483 6.01794 6.05121 6.12807 6.22694 6.32654 6.43841 6.74821 6.80490 6.84188 6.99719 7.28269 7.32446 7.47469 7.57374 7.66802 7.80367 8.32058 8.46270 9.22754 9.82799 10.38247 11.27434 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.026225 B = 0.003511 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.425543 B = 7973.980843 C = 8321.423273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.598 5.598 3 C -0.263 4.263 4 H 0.065 0.935 5 C 0.010 3.990 6 N -0.903 5.903 7 Si 0.904 3.096 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.169 3.831 12 C -0.156 4.156 13 C 0.520 3.480 14 O -0.524 6.524 15 N -0.679 5.679 16 C 0.174 3.826 17 C -0.178 4.178 18 C 0.224 3.776 19 N -0.874 5.874 20 C -0.195 4.195 21 C -0.086 4.086 22 C 0.004 3.996 23 F -0.144 7.144 24 H 0.019 0.981 25 H 0.051 0.949 26 H -0.004 1.004 27 H 0.254 0.746 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.414 0.586 33 H 0.149 0.851 34 H 0.398 0.602 35 H 0.401 0.599 36 H 0.127 0.873 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.548 -17.959 3.919 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.320 5.320 3 C -0.393 4.393 4 H 0.083 0.917 5 C -0.189 4.189 6 N -0.547 5.547 7 Si 0.733 3.267 8 H -0.213 1.213 9 H -0.216 1.216 10 H -0.203 1.203 11 C 0.041 3.959 12 C -0.199 4.199 13 C 0.309 3.691 14 O -0.399 6.399 15 N -0.325 5.325 16 C 0.076 3.924 17 C -0.203 4.203 18 C 0.119 3.881 19 N -0.413 5.413 20 C -0.219 4.219 21 C -0.106 4.106 22 C -0.019 4.019 23 F -0.123 7.123 24 H 0.038 0.962 25 H 0.069 0.931 26 H 0.015 0.985 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.251 0.749 33 H 0.167 0.833 34 H 0.226 0.774 35 H 0.230 0.770 36 H 0.145 0.855 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.521 -18.068 3.260 20.681 hybrid contribution 0.327 1.100 0.621 1.305 sum 9.848 -16.967 3.880 19.998 Atomic orbital electron populations 1.20784 0.82940 0.97211 0.97603 1.43928 1.01730 1.00723 1.85624 1.19189 1.04984 0.87836 1.27254 0.91733 1.25296 0.97848 0.99195 0.96568 1.70005 1.21923 1.29411 1.33324 0.86281 0.79370 0.83961 0.77072 1.21334 1.21617 1.20328 1.20627 0.96570 0.88051 0.90672 1.22618 1.00151 0.91386 1.05778 1.21751 0.77960 0.87031 0.82310 1.90624 1.53501 1.64596 1.31200 1.43880 1.59446 1.18089 1.11054 1.17539 0.93555 0.86113 0.95158 1.20623 0.99770 0.97758 1.02124 1.17623 0.89366 0.92674 0.88462 1.42456 1.49580 1.21094 1.28188 1.20330 1.04706 1.00391 0.96451 1.20641 0.96313 0.94470 0.99199 1.17243 0.98434 0.95192 0.91053 1.91448 1.67798 1.93116 1.59975 0.96227 0.93066 0.98537 0.93605 0.93076 0.93809 0.89257 0.88373 0.74915 0.83300 0.77406 0.77039 0.85489 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.93 9.04 59.85 0.54 4.48 16 2 N -0.60 -15.17 2.89 -181.12 -0.52 -15.69 16 3 C -0.26 -7.19 9.55 -15.06 -0.14 -7.33 16 4 H 0.06 1.75 7.84 -52.48 -0.41 1.34 16 5 C 0.01 0.29 5.16 -17.43 -0.09 0.20 16 6 N -0.90 -25.84 11.06 55.49 0.61 -25.23 16 7 Si 0.90 21.50 29.56 -169.99 -5.02 16.47 16 8 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 C 0.17 3.64 5.00 -4.04 -0.02 3.62 16 12 C -0.16 -2.89 6.02 -27.88 -0.17 -3.06 16 13 C 0.52 8.84 7.67 -10.99 -0.08 8.76 16 14 O -0.52 -10.03 13.39 5.55 0.07 -9.95 16 15 N -0.68 -9.84 5.23 -9.83 -0.05 -9.89 16 16 C 0.17 2.47 6.32 -83.62 -0.53 1.94 16 17 C -0.18 -2.44 8.54 -39.20 -0.33 -2.77 16 18 C 0.22 2.47 6.75 -83.76 -0.57 1.91 16 19 N -0.87 -6.91 9.09 32.42 0.29 -6.62 16 20 C -0.20 -1.91 9.89 -39.35 -0.39 -2.30 16 21 C -0.09 -0.92 10.01 -39.57 -0.40 -1.31 16 22 C 0.00 0.06 7.31 -39.25 -0.29 -0.23 16 23 F -0.14 -1.96 16.94 2.25 0.04 -1.92 16 24 H 0.02 0.50 7.74 -51.92 -0.40 0.10 16 25 H 0.05 1.35 7.19 -51.93 -0.37 0.98 16 26 H 0.00 -0.08 7.96 -51.93 -0.41 -0.50 16 27 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.05 1.12 8.00 -51.93 -0.42 0.70 16 29 H 0.04 0.92 7.90 -51.93 -0.41 0.51 16 30 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 31 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 32 H 0.41 5.17 8.65 -40.82 -0.35 4.81 16 33 H 0.15 2.25 6.18 -52.49 -0.32 1.92 16 34 H 0.40 2.13 8.84 -40.82 -0.36 1.77 16 35 H 0.40 2.94 8.84 -40.82 -0.36 2.58 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 320.61 15.07 4.83 4.83 Total: -1.00 -31.54 320.61 -6.86 -38.41 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.65 Total: 5.69 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -2.47 Total: 3.90 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.33 Total: -57.43 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.54 -6.86 -38.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083169980.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.894 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds