Wall clock time and date at job start Tue Mar 31 2020 05:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47051 * 2 1 4 4 H 1.09005 * 109.47108 * 55.79681 * 3 2 1 5 5 C 1.50698 * 109.47251 * 175.79712 * 3 2 1 6 6 H 1.07999 * 119.99547 * 120.00180 * 5 3 2 7 7 C 1.37872 * 120.00311 * 299.99997 * 5 3 2 8 8 N 1.31520 * 119.99706 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00247 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47018 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.46984 * 120.00056 * 9 7 5 12 12 H 1.48493 * 109.47250 * 240.00083 * 9 7 5 13 13 N 1.46903 * 109.46807 * 295.80026 * 3 2 1 14 14 C 1.46903 * 110.99625 * 154.44815 * 13 3 2 15 15 H 1.09001 * 109.47277 * 37.26541 * 14 13 3 16 16 C 1.52999 * 109.47479 * 277.26383 * 14 13 3 17 17 C 1.53003 * 109.46929 * 157.26527 * 14 13 3 18 18 C 1.50700 * 109.47309 * 295.00068 * 17 14 13 19 19 C 1.38246 * 119.98595 * 270.29979 * 18 17 14 20 20 C 1.38216 * 120.01030 * 180.25097 * 19 18 17 21 21 C 1.38350 * 119.98680 * 359.46809 * 20 19 18 22 22 Cl 1.73601 * 120.01353 * 180.27455 * 21 20 19 23 23 C 1.38350 * 119.97412 * 0.25800 * 21 20 19 24 24 C 1.38213 * 119.98979 * 359.97438 * 23 21 20 25 25 H 1.08998 * 109.47213 * 65.40695 * 1 2 3 26 26 H 1.09002 * 109.46980 * 185.40525 * 1 2 3 27 27 H 1.08996 * 109.47250 * 305.40562 * 1 2 3 28 28 H 1.09003 * 109.47324 * 240.00351 * 2 1 3 29 29 H 1.08997 * 109.47261 * 119.99619 * 2 1 3 30 30 H 0.97001 * 119.99700 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99944 * 278.39912 * 13 3 2 32 32 H 1.08996 * 109.47170 * 297.07537 * 16 14 13 33 33 H 1.08997 * 109.46707 * 57.06801 * 16 14 13 34 34 H 1.08997 * 109.47369 * 177.07330 * 16 14 13 35 35 H 1.09001 * 109.47269 * 174.99849 * 17 14 13 36 36 H 1.09003 * 109.47072 * 54.99916 * 17 14 13 37 37 H 1.07993 * 119.99584 * 359.97438 * 19 18 17 38 38 H 1.07998 * 120.00645 * 179.74582 * 20 19 18 39 39 H 1.08002 * 120.00813 * 180.02562 * 23 21 20 40 40 H 1.07993 * 119.99610 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6165 1.9777 0.8500 5 6 3.5434 1.4439 0.1041 6 1 4.1384 1.8921 -0.6778 7 6 4.1592 0.8729 1.1976 8 7 3.4346 0.3267 2.1496 9 14 6.0228 0.8740 1.3263 10 1 6.6009 1.5447 0.1342 11 1 6.4338 1.6039 2.5524 12 1 6.5150 -0.5253 1.3949 13 7 1.6349 2.1051 -1.2470 14 6 1.5456 3.5601 -1.0650 15 1 2.3437 3.8929 -0.4014 16 6 0.1901 3.9151 -0.4507 17 6 1.6880 4.2533 -2.4215 18 6 3.0692 4.0041 -2.9705 19 6 4.0996 4.8754 -2.6702 20 6 5.3654 4.6502 -3.1777 21 6 5.6035 3.5466 -3.9774 22 17 7.1946 3.2592 -4.6093 23 6 4.5731 2.6719 -4.2729 24 6 3.3067 2.9007 -3.7688 25 1 -0.3633 0.4277 -0.9344 26 1 -0.3633 -1.0231 0.0968 27 1 -0.3633 0.5954 0.8376 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8679 -0.0753 2.9187 31 1 2.2641 1.8728 -2.0008 32 1 -0.6063 3.6293 -1.1378 33 1 0.0668 3.3803 0.4910 34 1 0.1441 4.9886 -0.2676 35 1 1.5334 5.3254 -2.2997 36 1 0.9451 3.8553 -3.1127 37 1 3.9146 5.7346 -2.0427 38 1 6.1694 5.3331 -2.9464 39 1 4.7585 1.8100 -4.8967 40 1 2.5024 2.2178 -3.9991 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136960436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:09 Heat of formation + Delta-G solvation = -5.664352 kcal Electronic energy + Delta-G solvation = -20391.091815 eV Core-core repulsion = 17423.480961 eV Total energy + Delta-G solvation = -2967.610853 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.41904 -36.99755 -36.17661 -33.98094 -31.70733 -30.92056 -30.77060 -28.99709 -26.16272 -25.77346 -22.83673 -22.64529 -21.44229 -19.71090 -19.35799 -16.94027 -16.60785 -15.56598 -15.22816 -14.78964 -14.58347 -13.86514 -13.78050 -13.36335 -13.20666 -12.95794 -12.78189 -12.14902 -12.01388 -11.85984 -11.44311 -11.34481 -11.23784 -11.15134 -11.11813 -10.87948 -10.70557 -10.67180 -10.52473 -10.29576 -10.03151 -9.54974 -9.45761 -8.99006 -8.84704 -8.34801 -8.30540 -7.22389 -5.96762 -4.08542 1.33404 1.48075 2.26879 3.27312 3.36340 3.41851 3.80711 4.42815 4.89947 4.98976 5.04938 5.19583 5.30385 5.49673 5.55679 5.56275 5.74607 5.85184 6.01843 6.09595 6.13108 6.23423 6.38558 6.39472 6.40780 6.46751 6.51686 6.68058 6.72353 6.78970 6.88761 7.00129 7.16131 7.18973 7.48724 7.63118 7.81437 8.12600 8.20322 8.37643 8.71786 9.04947 9.59290 11.03379 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012640 B = 0.007054 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.593855 B = 3968.499758 C = 5369.409029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.538 4.538 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.881 3.119 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.687 5.687 14 C 0.091 3.909 15 H 0.047 0.953 16 C -0.134 4.134 17 C -0.083 4.083 18 C -0.065 4.065 19 C -0.103 4.103 20 C -0.109 4.109 21 C -0.040 4.040 22 Cl -0.084 7.084 23 C -0.105 4.105 24 C -0.100 4.100 25 H 0.046 0.954 26 H 0.023 0.977 27 H 0.036 0.964 28 H 0.028 0.972 29 H 0.089 0.911 30 H 0.259 0.741 31 H 0.328 0.672 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.789 7.740 -10.816 13.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.577 4.577 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.709 3.291 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.319 5.319 14 C -0.020 4.020 15 H 0.065 0.935 16 C -0.192 4.192 17 C -0.121 4.121 18 C -0.066 4.066 19 C -0.121 4.121 20 C -0.128 4.128 21 C -0.067 4.067 22 Cl -0.055 7.055 23 C -0.124 4.124 24 C -0.118 4.118 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.307 7.517 -10.586 13.049 hybrid contribution 2.374 0.059 0.290 2.393 sum 1.067 7.577 -10.295 12.827 Atomic orbital electron populations 1.21679 0.99024 0.98153 1.00317 1.21498 0.92038 0.99408 1.01562 1.19162 0.92579 0.91003 0.86514 0.94945 1.21891 0.92720 1.37465 1.05627 0.92871 1.24894 0.97643 0.95116 0.95733 1.69888 1.34639 1.38331 1.09617 0.86704 0.86599 0.77788 0.78026 1.19711 1.21116 1.20998 1.61069 1.55582 1.05322 1.09923 1.21306 0.96842 0.90425 0.93386 0.93490 1.21761 0.97106 0.99140 1.01197 1.20888 0.92402 1.00818 0.98004 1.20055 0.96347 0.94374 0.95789 1.20962 0.91873 0.99979 0.99311 1.20959 0.97715 0.96742 0.97400 1.20849 0.86134 0.98275 1.01413 1.98344 1.25122 1.96062 1.86017 1.21000 0.92036 0.98714 1.00657 1.21051 0.96509 0.97043 0.97203 0.93498 0.95818 0.94503 0.95289 0.89256 0.93054 0.85303 0.92889 0.92374 0.93861 0.91034 0.90444 0.85416 0.85450 0.85212 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.73 37.16 0.36 -2.37 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.67 16 3 C 0.22 5.19 1.79 -68.86 -0.12 5.06 16 4 H 0.03 0.87 6.93 -51.93 -0.36 0.51 16 5 C -0.54 -14.34 8.28 -34.44 -0.29 -14.63 16 6 H 0.05 1.45 7.73 -52.49 -0.41 1.04 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 8 N -0.89 -25.03 11.29 55.43 0.63 -24.40 16 9 Si 0.88 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 N -0.69 -13.68 5.57 -100.94 -0.56 -14.24 16 14 C 0.09 1.59 2.46 -67.71 -0.17 1.42 16 15 H 0.05 0.96 7.68 -51.93 -0.40 0.56 16 16 C -0.13 -2.12 9.39 37.16 0.35 -1.77 16 17 C -0.08 -1.16 4.99 -27.88 -0.14 -1.30 16 18 C -0.07 -0.96 4.83 -104.62 -0.51 -1.47 16 19 C -0.10 -1.48 9.70 -39.59 -0.38 -1.86 16 20 C -0.11 -1.57 9.83 -39.55 -0.39 -1.96 16 21 C -0.04 -0.60 6.32 -39.50 -0.25 -0.85 16 22 Cl -0.08 -1.16 28.96 -51.86 -1.50 -2.67 16 23 C -0.11 -1.53 9.83 -39.55 -0.39 -1.92 16 24 C -0.10 -1.46 8.02 -39.59 -0.32 -1.77 16 25 H 0.05 0.90 7.88 -51.93 -0.41 0.49 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.33 6.50 5.23 -39.29 -0.21 6.29 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.04 7.23 -51.93 -0.38 0.66 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 36 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 37 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 40 H 0.13 1.80 7.58 -52.49 -0.40 1.40 16 LS Contribution 338.19 15.07 5.10 5.10 Total: -1.00 -27.89 338.19 -10.06 -37.95 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.22 Total: 6.09 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -2.48 Total: -24.31 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.06 Total: -38.64 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.50 Total: -2.67 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.89 -10.06 -37.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136960436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.284 kcal (2) G-P(sol) polarization free energy of solvation -27.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds