Wall clock time and date at job start Tue Mar 31 2020 05:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47051 * 2 1 4 4 H 1.09005 * 109.47108 * 55.79681 * 3 2 1 5 5 C 1.50698 * 109.47251 * 175.79712 * 3 2 1 6 6 H 1.07999 * 119.99547 * 120.00180 * 5 3 2 7 7 C 1.37872 * 120.00311 * 299.99997 * 5 3 2 8 8 N 1.31520 * 119.99706 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00247 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47018 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.46984 * 120.00056 * 9 7 5 12 12 H 1.48493 * 109.47250 * 240.00083 * 9 7 5 13 13 N 1.46903 * 109.46807 * 295.80026 * 3 2 1 14 14 C 1.46903 * 110.99625 * 154.44815 * 13 3 2 15 15 H 1.09001 * 109.47277 * 37.26541 * 14 13 3 16 16 C 1.52999 * 109.47479 * 277.26383 * 14 13 3 17 17 C 1.53003 * 109.46929 * 157.26527 * 14 13 3 18 18 C 1.50700 * 109.47309 * 295.00068 * 17 14 13 19 19 C 1.38246 * 119.98595 * 270.29979 * 18 17 14 20 20 C 1.38216 * 120.01030 * 180.25097 * 19 18 17 21 21 C 1.38350 * 119.98680 * 359.46809 * 20 19 18 22 22 Cl 1.73601 * 120.01353 * 180.27455 * 21 20 19 23 23 C 1.38350 * 119.97412 * 0.25800 * 21 20 19 24 24 C 1.38213 * 119.98979 * 359.97438 * 23 21 20 25 25 H 1.08998 * 109.47213 * 65.40695 * 1 2 3 26 26 H 1.09002 * 109.46980 * 185.40525 * 1 2 3 27 27 H 1.08996 * 109.47250 * 305.40562 * 1 2 3 28 28 H 1.09003 * 109.47324 * 240.00351 * 2 1 3 29 29 H 1.08997 * 109.47261 * 119.99619 * 2 1 3 30 30 H 0.97001 * 119.99700 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99944 * 278.39912 * 13 3 2 32 32 H 1.08996 * 109.47170 * 297.07537 * 16 14 13 33 33 H 1.08997 * 109.46707 * 57.06801 * 16 14 13 34 34 H 1.08997 * 109.47369 * 177.07330 * 16 14 13 35 35 H 1.09001 * 109.47269 * 174.99849 * 17 14 13 36 36 H 1.09003 * 109.47072 * 54.99916 * 17 14 13 37 37 H 1.07993 * 119.99584 * 359.97438 * 19 18 17 38 38 H 1.07998 * 120.00645 * 179.74582 * 20 19 18 39 39 H 1.08002 * 120.00813 * 180.02562 * 23 21 20 40 40 H 1.07993 * 119.99610 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6165 1.9777 0.8500 5 6 3.5434 1.4439 0.1041 6 1 4.1384 1.8921 -0.6778 7 6 4.1592 0.8729 1.1976 8 7 3.4346 0.3267 2.1496 9 14 6.0228 0.8740 1.3263 10 1 6.6009 1.5447 0.1342 11 1 6.4338 1.6039 2.5524 12 1 6.5150 -0.5253 1.3949 13 7 1.6349 2.1051 -1.2470 14 6 1.5456 3.5601 -1.0650 15 1 2.3437 3.8929 -0.4014 16 6 0.1901 3.9151 -0.4507 17 6 1.6880 4.2533 -2.4215 18 6 3.0692 4.0041 -2.9705 19 6 4.0996 4.8754 -2.6702 20 6 5.3654 4.6502 -3.1777 21 6 5.6035 3.5466 -3.9774 22 17 7.1946 3.2592 -4.6093 23 6 4.5731 2.6719 -4.2729 24 6 3.3067 2.9007 -3.7688 25 1 -0.3633 0.4277 -0.9344 26 1 -0.3633 -1.0231 0.0968 27 1 -0.3633 0.5954 0.8376 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8679 -0.0753 2.9187 31 1 2.2641 1.8728 -2.0008 32 1 -0.6063 3.6293 -1.1378 33 1 0.0668 3.3803 0.4910 34 1 0.1441 4.9886 -0.2676 35 1 1.5334 5.3254 -2.2997 36 1 0.9451 3.8553 -3.1127 37 1 3.9146 5.7346 -2.0427 38 1 6.1694 5.3331 -2.9464 39 1 4.7585 1.8100 -4.8967 40 1 2.5024 2.2178 -3.9991 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136960436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:09 Heat of formation + Delta-G solvation = -19.030743 kcal Electronic energy + Delta-G solvation = -20391.671425 eV Core-core repulsion = 17423.480961 eV Total energy + Delta-G solvation = -2968.190463 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.56007 -38.46914 -37.39475 -35.62685 -33.59647 -32.15801 -31.99390 -30.55278 -27.81875 -27.20927 -24.64392 -23.79508 -22.65582 -21.28644 -20.98474 -18.64651 -18.03553 -16.96843 -16.55434 -16.36539 -16.07947 -15.47557 -15.07779 -14.72697 -14.47413 -14.43062 -14.25440 -13.60132 -13.45495 -13.20982 -13.08328 -12.98963 -12.87196 -12.58934 -12.55157 -12.31334 -12.26308 -12.09817 -11.86417 -11.72691 -11.59933 -11.43306 -11.27576 -10.89010 -10.43147 -9.95432 -9.45040 -8.96348 -8.03458 -6.23590 0.20551 0.37610 1.15780 1.31588 1.36204 1.45486 2.38838 2.68497 3.16116 3.74136 3.87075 3.87184 3.99266 4.27454 4.40973 4.43264 4.58320 4.65772 4.67977 4.80601 4.84376 4.85987 4.95653 5.04128 5.07269 5.13273 5.25504 5.27867 5.29775 5.34637 5.47321 5.51216 5.60167 5.64036 5.71609 5.83607 5.90886 6.17054 6.27310 6.47146 6.92732 7.11199 7.47541 8.92429 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012640 B = 0.007054 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.593855 B = 3968.499758 C = 5369.409029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 C 0.225 3.775 4 H 0.001 0.999 5 C -0.543 4.543 6 H 0.044 0.956 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 0.935 3.065 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.677 5.677 14 C 0.089 3.911 15 H 0.013 0.987 16 C -0.128 4.128 17 C -0.072 4.072 18 C -0.078 4.078 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.055 4.055 22 Cl -0.079 7.079 23 C -0.116 4.116 24 C -0.109 4.109 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.030 0.970 28 H 0.025 0.975 29 H 0.057 0.943 30 H 0.260 0.740 31 H 0.330 0.670 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.163 8.526 -11.923 14.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.143 4.143 3 C 0.116 3.884 4 H 0.019 0.981 5 C -0.582 4.582 6 H 0.062 0.938 7 C -0.176 4.176 8 N -0.550 5.550 9 Si 0.762 3.238 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.207 1.207 13 N -0.309 5.309 14 C -0.021 4.021 15 H 0.031 0.969 16 C -0.186 4.186 17 C -0.110 4.110 18 C -0.079 4.079 19 C -0.130 4.130 20 C -0.138 4.138 21 C -0.081 4.081 22 Cl -0.050 7.050 23 C -0.134 4.134 24 C -0.127 4.127 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.149 0.851 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.684 8.312 -11.705 14.454 hybrid contribution 2.507 -0.159 0.617 2.587 sum 0.823 8.153 -11.087 13.786 Atomic orbital electron populations 1.21525 0.96239 0.99316 1.00752 1.21368 0.94516 0.98658 0.99735 1.18885 0.90968 0.91258 0.87271 0.98067 1.22141 0.94203 1.36735 1.05156 0.93778 1.25523 1.01096 0.95215 0.95754 1.70002 1.35904 1.39074 1.10020 0.85863 0.82501 0.77706 0.77774 1.19864 1.20800 1.20694 1.61014 1.54890 1.06982 1.07972 1.21378 0.96675 0.88917 0.95139 0.96863 1.21707 0.96431 1.00513 0.99940 1.20812 0.92387 1.01985 0.95783 1.20245 0.96908 0.94637 0.96075 1.21250 0.91828 1.00554 0.99321 1.21221 0.98335 0.96957 0.97242 1.21061 0.86577 0.98681 1.01786 1.98340 1.24695 1.96057 1.85946 1.21233 0.92099 0.99188 1.00911 1.21253 0.96880 0.97267 0.97274 0.92096 0.94078 0.95122 0.95655 0.92431 0.93085 0.85120 0.91383 0.95160 0.91255 0.88508 0.88998 0.83768 0.84001 0.83975 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 9.73 71.98 0.70 -4.08 16 2 C -0.10 -4.96 5.45 30.60 0.17 -4.79 16 3 C 0.23 10.96 1.79 44.17 0.08 11.04 16 4 H 0.00 0.08 6.93 -2.38 -0.02 0.06 16 5 C -0.54 -29.27 8.28 25.60 0.21 -29.06 16 6 H 0.04 2.41 7.73 -2.91 -0.02 2.39 16 7 C 0.02 1.31 5.29 84.65 0.45 1.76 16 8 N -0.91 -52.29 11.29 21.45 0.24 -52.05 16 9 Si 0.93 44.44 29.54 68.60 2.03 46.47 16 10 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 N -0.68 -26.47 5.57 -473.28 -2.63 -29.11 16 14 C 0.09 3.01 2.46 44.92 0.11 3.12 16 15 H 0.01 0.54 7.68 -2.39 -0.02 0.52 16 16 C -0.13 -3.83 9.39 71.98 0.68 -3.16 16 17 C -0.07 -1.83 4.99 29.85 0.15 -1.68 16 18 C -0.08 -2.18 4.83 -19.86 -0.10 -2.28 16 19 C -0.11 -3.03 9.70 22.27 0.22 -2.81 16 20 C -0.12 -3.27 9.83 22.29 0.22 -3.05 16 21 C -0.05 -1.57 6.32 22.32 0.14 -1.43 16 22 Cl -0.08 -2.10 28.96 -2.72 -0.08 -2.18 16 23 C -0.12 -3.24 9.83 22.29 0.22 -3.02 16 24 C -0.11 -3.02 8.02 22.27 0.18 -2.84 16 25 H 0.06 2.22 7.88 -2.39 -0.02 2.20 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 3.12 5.97 -2.39 -0.01 3.11 16 30 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.33 12.76 5.23 -89.69 -0.47 12.29 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.03 1.06 7.23 -2.39 -0.02 1.04 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.10 1.99 8.09 -2.39 -0.02 1.97 16 36 H 0.09 2.10 8.09 -2.39 -0.02 2.08 16 37 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 38 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.14 3.62 7.58 -2.91 -0.02 3.59 16 Total: -1.00 -59.76 338.19 3.52 -56.24 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.54 Total: 22.90 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 3.42 Total: -42.27 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -2.39 Total: -81.15 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.08 Total: -2.18 kcal Total: -59.76 3.52 -56.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136960436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.210 kcal (2) G-P(sol) polarization free energy of solvation -59.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds