Wall clock time and date at job start Tue Mar 31 2020 05:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46664 * 2 1 4 4 H 1.09006 * 109.47402 * 181.66872 * 3 2 1 5 5 C 1.50703 * 109.47626 * 301.67337 * 3 2 1 6 6 H 1.07998 * 119.99813 * 120.00130 * 5 3 2 7 7 C 1.37872 * 119.99541 * 299.99981 * 5 3 2 8 8 N 1.31514 * 120.00293 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99839 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46845 * 89.99901 * 9 7 5 11 11 H 1.48502 * 109.47081 * 209.99760 * 9 7 5 12 12 H 1.48495 * 109.47079 * 330.00146 * 9 7 5 13 13 N 1.46901 * 109.47068 * 61.67451 * 3 2 1 14 14 C 1.46902 * 111.00323 * 85.88497 * 13 3 2 15 15 C 1.50700 * 109.47296 * 179.97438 * 14 13 3 16 16 C 1.38242 * 119.98621 * 269.72912 * 15 14 13 17 17 C 1.50697 * 119.99435 * 359.97438 * 16 15 14 18 18 C 1.38218 * 120.00920 * 179.72656 * 16 15 14 19 19 C 1.38350 * 119.98863 * 0.54525 * 18 16 15 20 20 Cl 1.73594 * 120.01508 * 179.74898 * 19 18 16 21 21 C 1.38355 * 119.97175 * 359.72826 * 19 18 16 22 22 C 1.38209 * 119.98731 * 359.97438 * 21 19 18 23 23 C 1.50701 * 119.99204 * 180.02562 * 22 21 19 24 24 H 1.08990 * 109.47232 * 65.45026 * 1 2 3 25 25 H 1.09004 * 109.46607 * 185.44881 * 1 2 3 26 26 H 1.08999 * 109.46671 * 305.44258 * 1 2 3 27 27 H 1.08999 * 109.46559 * 240.01026 * 2 1 3 28 28 H 1.08997 * 109.47438 * 120.00430 * 2 1 3 29 29 H 0.97008 * 120.00348 * 179.97438 * 8 7 5 30 30 H 1.00899 * 111.00230 * 209.84277 * 13 3 2 31 31 H 1.08995 * 109.46722 * 299.99186 * 14 13 3 32 32 H 1.09000 * 109.46953 * 59.99175 * 14 13 3 33 33 H 1.08999 * 109.47271 * 89.99914 * 17 16 15 34 34 H 1.09000 * 109.47073 * 209.99908 * 17 16 15 35 35 H 1.08997 * 109.47235 * 330.00018 * 17 16 15 36 36 H 1.08001 * 120.00480 * 180.27071 * 18 16 15 37 37 H 1.07999 * 120.00415 * 180.02562 * 21 19 18 38 38 H 1.09002 * 109.46870 * 269.96995 * 23 22 21 39 39 H 1.08995 * 109.47412 * 29.97681 * 23 22 21 40 40 H 1.09004 * 109.46988 * 149.98107 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4428 -0.0299 5 6 1.5040 2.1649 -1.2092 6 1 0.8862 3.0418 -1.0844 7 6 1.8025 1.7061 -2.4746 8 7 2.5553 0.6385 -2.6265 9 14 1.1377 2.6010 -3.9735 10 1 2.1040 3.6471 -4.3944 11 1 0.9426 1.6325 -5.0822 12 1 -0.1619 3.2349 -3.6354 13 7 1.5835 2.1232 1.2192 14 6 2.5096 1.8836 2.3341 15 6 2.0099 2.5963 3.5642 16 6 2.4102 3.8943 3.8212 17 6 3.3466 4.5959 2.8715 18 6 1.9478 4.5504 4.9464 19 6 1.0931 3.9040 5.8215 20 17 0.5170 4.7252 7.2383 21 6 0.6973 2.6030 5.5667 22 6 1.1555 1.9501 4.4380 23 6 0.7240 0.5331 4.1601 24 1 -0.3633 0.4269 -0.9347 25 1 -0.3633 -1.0231 0.0976 26 1 -0.3632 0.5959 0.8372 27 1 1.8933 -0.5137 -0.8901 28 1 1.8935 -0.5139 0.8899 29 1 2.7651 0.3155 -3.5168 30 1 1.4607 3.1115 1.0572 31 1 2.5696 0.8136 2.5329 32 1 3.4984 2.2606 2.0725 33 1 2.7675 5.1187 2.1102 34 1 3.9531 5.3140 3.4234 35 1 3.9963 3.8627 2.3938 36 1 2.2571 5.5660 5.1448 37 1 0.0298 2.0981 6.2492 38 1 1.4280 -0.1584 4.6230 39 1 -0.2713 0.3689 4.5726 40 1 0.7036 0.3641 3.0834 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184095463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:48 Heat of formation + Delta-G solvation = -15.551280 kcal Electronic energy + Delta-G solvation = -20082.805467 eV Core-core repulsion = 17114.765885 eV Total energy + Delta-G solvation = -2968.039583 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89267 -38.11172 -37.39362 -34.86040 -34.55930 -33.15845 -31.66786 -28.96926 -27.87189 -27.72732 -25.66184 -24.86734 -21.80688 -21.74550 -20.83145 -18.44499 -17.41169 -17.28475 -16.78451 -15.99264 -15.59820 -15.57767 -15.02394 -14.71351 -14.23878 -14.05467 -14.01001 -13.93791 -13.66167 -13.54144 -13.48622 -13.30000 -12.80987 -12.73981 -12.56890 -12.38352 -12.21723 -12.10936 -11.84246 -11.80827 -11.63399 -11.50163 -11.23693 -10.76062 -10.50427 -9.56831 -9.44476 -8.92508 -8.07019 -6.18252 0.19298 0.34419 1.15973 1.42131 1.44955 1.53680 2.43903 2.60284 3.22447 3.72159 3.80059 3.88482 4.05500 4.18617 4.28568 4.43610 4.59299 4.64796 4.68641 4.75193 4.83539 4.85794 4.87588 4.90692 4.98796 4.99916 5.18477 5.25860 5.34584 5.38288 5.43848 5.47813 5.61314 5.74354 5.75937 5.86418 5.90646 5.96601 6.32247 6.52528 6.82371 7.05841 7.50462 8.97782 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025383 B = 0.004132 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.837658 B = 6774.489905 C = 7270.975876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.096 4.096 3 C 0.223 3.777 4 H -0.034 1.034 5 C -0.520 4.520 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.949 3.051 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.667 5.667 14 C 0.099 3.901 15 C -0.083 4.083 16 C -0.070 4.070 17 C -0.118 4.118 18 C -0.123 4.123 19 C -0.035 4.035 20 Cl -0.071 7.071 21 C -0.125 4.125 22 C -0.055 4.055 23 C -0.118 4.118 24 H 0.028 0.972 25 H 0.033 0.967 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.023 0.977 29 H 0.260 0.740 30 H 0.330 0.670 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.504 4.904 16.322 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C 0.115 3.885 4 H -0.016 1.016 5 C -0.559 4.559 6 H 0.073 0.927 7 C -0.179 4.179 8 N -0.555 5.555 9 Si 0.776 3.224 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.195 1.195 13 N -0.297 5.297 14 C -0.030 4.030 15 C -0.084 4.084 16 C -0.071 4.071 17 C -0.174 4.174 18 C -0.142 4.142 19 C -0.062 4.062 20 Cl -0.042 7.042 21 C -0.143 4.143 22 C -0.055 4.055 23 C -0.174 4.174 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.903 4.342 16.475 17.144 hybrid contribution 0.592 0.896 -1.236 1.637 sum -1.311 5.238 15.239 16.167 Atomic orbital electron populations 1.21304 0.96119 0.98385 1.00599 1.21289 0.96146 0.97603 0.98448 1.18921 0.91055 0.92246 0.86260 1.01599 1.21424 1.31253 1.11863 0.91320 0.92676 1.25545 0.95387 0.95639 1.01343 1.70013 1.38362 1.24198 1.22929 0.85693 0.78886 0.78350 0.79521 1.20406 1.21266 1.19455 1.60662 1.47716 1.15695 1.05677 1.20876 0.93593 0.99456 0.89081 1.19772 0.98144 0.94311 0.96139 1.19881 0.97983 0.93537 0.95658 1.20885 0.97939 1.00448 0.98130 1.20986 0.98379 1.00917 0.93891 1.20929 1.00391 0.94012 0.90847 1.98350 1.87989 1.78829 1.39040 1.21039 1.01902 0.93217 0.98171 1.19852 0.95229 0.97367 0.93098 1.20889 1.01980 0.91269 1.03307 0.95323 0.94782 0.92576 0.92666 0.95813 0.93115 0.85311 0.91079 0.95306 0.90831 0.89446 0.91833 0.83646 0.83647 0.90208 0.90252 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.56 9.46 71.98 0.68 -3.88 16 2 C -0.10 -4.49 5.58 30.60 0.17 -4.32 16 3 C 0.22 10.71 2.30 44.17 0.10 10.82 16 4 H -0.03 -1.81 7.79 -2.38 -0.02 -1.83 16 5 C -0.52 -27.16 7.35 25.60 0.19 -26.97 16 6 H 0.06 2.86 7.60 -2.91 -0.02 2.84 16 7 C 0.02 1.07 5.30 84.65 0.45 1.52 16 8 N -0.92 -51.35 11.34 21.45 0.24 -51.11 16 9 Si 0.95 42.68 29.54 68.60 2.03 44.71 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 13 N -0.67 -26.34 5.47 -499.46 -2.73 -29.07 16 14 C 0.10 3.34 4.40 85.56 0.38 3.72 16 15 C -0.08 -2.43 5.39 -19.86 -0.11 -2.54 16 16 C -0.07 -1.84 5.88 -19.87 -0.12 -1.96 16 17 C -0.12 -2.82 9.60 71.23 0.68 -2.13 16 18 C -0.12 -2.92 9.49 22.29 0.21 -2.71 16 19 C -0.04 -0.83 6.32 22.32 0.14 -0.69 16 20 Cl -0.07 -1.47 28.96 -2.72 -0.08 -1.55 16 21 C -0.12 -2.99 9.49 22.29 0.21 -2.78 16 22 C -0.05 -1.46 5.88 -19.87 -0.12 -1.58 16 23 C -0.12 -2.90 9.19 71.24 0.65 -2.24 16 24 H 0.03 1.32 7.37 -2.39 -0.02 1.31 16 25 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.06 2.28 7.49 -2.39 -0.02 2.26 16 27 H 0.05 2.93 6.12 -2.39 -0.01 2.92 16 28 H 0.02 1.01 7.48 -2.39 -0.02 0.99 16 29 H 0.26 13.98 8.31 -92.70 -0.77 13.21 16 30 H 0.33 13.15 8.19 -89.69 -0.73 12.42 16 31 H 0.07 2.44 6.03 -2.39 -0.01 2.43 16 32 H 0.03 1.01 5.85 -2.39 -0.01 1.00 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.09 1.65 8.09 -2.39 -0.02 1.63 16 35 H 0.06 1.67 5.94 -2.39 -0.01 1.66 16 36 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 37 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 40 H 0.07 2.07 6.66 -2.39 -0.02 2.05 16 Total: -1.00 -55.96 333.80 3.29 -52.66 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.30 Total: 20.10 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 3.53 Total: -35.75 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -2.49 Total: -80.18 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -55.96 3.29 -52.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184095463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.113 kcal (2) G-P(sol) polarization free energy of solvation -55.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds