Wall clock time and date at job start Tue Mar 31 2020 05:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47160 * 2 1 4 4 C 1.53003 * 109.47073 * 240.00669 * 2 1 3 5 5 N 1.46893 * 109.47543 * 64.99512 * 4 2 1 6 6 C 1.46892 * 111.00516 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47729 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47465 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.46971 * 180.02562 * 8 7 6 10 10 H 1.07993 * 120.00244 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99807 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99973 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99979 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47167 * 90.00453 * 13 11 9 15 15 H 1.48506 * 109.47048 * 210.00186 * 13 11 9 16 16 H 1.48502 * 109.47395 * 330.00029 * 13 11 9 17 17 C 1.50694 * 109.47601 * 120.00371 * 2 1 3 18 18 C 1.38265 * 119.99277 * 60.01776 * 17 2 1 19 19 C 1.38215 * 120.02666 * 179.97438 * 18 17 2 20 20 C 1.38234 * 120.01496 * 0.02562 * 19 18 17 21 21 C 1.38327 * 119.98569 * 359.76615 * 20 19 18 22 22 Cl 1.73604 * 120.01716 * 180.27842 * 21 20 19 23 23 C 1.38195 * 119.99579 * 240.00382 * 17 2 1 24 24 H 1.08998 * 109.47475 * 59.99441 * 1 2 3 25 25 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47012 * 299.99784 * 1 2 3 27 27 H 1.09003 * 109.47411 * 185.00255 * 4 2 1 28 28 H 1.09008 * 109.46646 * 304.99650 * 4 2 1 29 29 H 1.00908 * 110.99821 * 56.04457 * 5 4 2 30 30 H 1.08997 * 109.47485 * 300.00512 * 6 5 4 31 31 H 1.09008 * 109.47165 * 60.00293 * 6 5 4 32 32 H 1.08997 * 109.47174 * 300.00848 * 7 6 5 33 33 H 1.09008 * 109.46439 * 59.99994 * 7 6 5 34 34 H 1.08998 * 109.47527 * 300.00100 * 8 7 6 35 35 H 1.08996 * 109.47023 * 60.00226 * 8 7 6 36 36 H 0.97005 * 119.99908 * 180.02562 * 12 11 9 37 37 H 1.08007 * 119.98705 * 359.97438 * 18 17 2 38 38 H 1.08000 * 119.99310 * 180.02562 * 19 18 17 39 39 H 1.08006 * 120.00805 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.00237 * 0.02562 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 1.6513 0.0375 -2.4457 6 6 2.1246 -0.6268 -3.6673 7 6 1.7011 0.1906 -4.8893 8 6 2.1947 -0.5011 -6.1616 9 6 1.7781 0.3044 -7.3652 10 1 1.2178 1.2185 -7.2356 11 6 2.1123 -0.1256 -8.6319 12 7 1.7492 0.5776 -9.6822 13 14 3.0821 -1.7063 -8.8560 14 1 2.1428 -2.8493 -8.9853 15 1 3.9133 -1.6074 -10.0827 16 1 3.9613 -1.9189 -7.6782 17 6 2.0324 -0.7104 1.2303 18 6 1.6987 -2.0343 1.4487 19 6 2.1595 -2.6867 2.5767 20 6 2.9541 -2.0158 3.4874 21 6 3.2918 -0.6926 3.2673 22 17 4.2956 0.1486 4.4069 23 6 2.8269 -0.0388 2.1400 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1263 -0.7994 -1.2057 28 1 1.6053 -1.7197 -1.2953 29 1 1.9880 0.9875 -2.3966 30 1 3.2114 -0.7048 -3.6407 31 1 1.6902 -1.6247 -3.7298 32 1 0.6143 0.2682 -4.9157 33 1 2.1352 1.1886 -4.8270 34 1 3.2816 -0.5783 -6.1351 35 1 1.7611 -1.4992 -6.2241 36 1 1.9841 0.2749 -10.5734 37 1 1.0776 -2.5588 0.7376 38 1 1.8989 -3.7210 2.7465 39 1 3.3145 -2.5259 4.3686 40 1 3.0873 0.9954 1.9693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187858187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:04 Heat of formation + Delta-G solvation = -10.245322 kcal Electronic energy + Delta-G solvation = -18576.888796 eV Core-core repulsion = 15609.079297 eV Total energy + Delta-G solvation = -2967.809499 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.99804 -37.34490 -36.63094 -34.77081 -33.01341 -31.33609 -31.08188 -29.54315 -27.16250 -25.10842 -23.38004 -22.93938 -21.93049 -20.54561 -19.83034 -17.38324 -16.69431 -16.04378 -15.76303 -15.68207 -14.84397 -14.43460 -14.25726 -14.08399 -13.88268 -13.72245 -13.35334 -12.61554 -12.56812 -12.40882 -12.13563 -11.96111 -11.86417 -11.63181 -11.50907 -11.28360 -10.97085 -10.90244 -10.87618 -10.76015 -9.94808 -9.71965 -9.59071 -9.24395 -9.15997 -8.97796 -8.52366 -8.26383 -6.02666 -4.00353 0.81214 0.91380 1.78154 3.26642 3.31352 3.38564 3.42222 4.11728 4.41970 4.46409 4.56848 4.65622 4.80717 4.91844 5.03685 5.05597 5.17113 5.31229 5.39340 5.52736 5.55643 5.61535 5.71381 5.78690 5.84795 5.87482 5.91232 5.99531 6.17154 6.21354 6.29384 6.45851 6.54834 6.57407 6.92623 7.18582 7.35065 7.44423 7.54734 7.81867 8.56552 9.02957 9.59994 11.10896 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031313 B = 0.002406 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.970486 B =11635.514913 C =11703.840466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.051 4.051 3 H 0.079 0.921 4 C 0.066 3.934 5 N -0.688 5.688 6 C 0.057 3.943 7 C -0.099 4.099 8 C -0.013 4.013 9 C -0.519 4.519 10 H 0.072 0.928 11 C 0.064 3.936 12 N -0.905 5.905 13 Si 0.881 3.119 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.266 1.266 17 C -0.058 4.058 18 C -0.109 4.109 19 C -0.105 4.105 20 C -0.119 4.119 21 C -0.033 4.033 22 Cl -0.075 7.075 23 C -0.109 4.109 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.027 0.973 28 H 0.072 0.928 29 H 0.339 0.661 30 H 0.023 0.977 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.013 0.987 35 H 0.011 0.989 36 H 0.262 0.738 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.774 -4.770 29.267 29.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.070 4.070 3 H 0.097 0.903 4 C -0.063 4.063 5 N -0.319 5.319 6 C -0.071 4.071 7 C -0.137 4.137 8 C -0.051 4.051 9 C -0.557 4.557 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.544 5.544 13 Si 0.708 3.292 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.191 1.191 17 C -0.059 4.059 18 C -0.127 4.127 19 C -0.124 4.124 20 C -0.137 4.137 21 C -0.059 4.059 22 Cl -0.046 7.046 23 C -0.128 4.128 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.156 0.844 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.249 -4.974 29.132 29.580 hybrid contribution 1.639 -0.586 -0.084 1.743 sum 2.889 -5.560 29.048 29.716 Atomic orbital electron populations 1.21747 0.93028 1.02185 1.02271 1.20193 0.97269 0.98917 0.90608 0.90255 1.21986 0.97388 0.97837 0.89107 1.60506 1.64274 1.05714 1.01381 1.22144 0.96801 0.98722 0.89473 1.21440 1.01243 0.98205 0.92815 1.19543 0.95993 0.96070 0.93502 1.21153 1.35517 1.09614 0.89376 0.91018 1.25050 0.95605 0.96974 0.96017 1.69920 1.47110 1.39071 0.98275 0.86764 0.80623 0.84157 0.77625 1.20305 1.21441 1.19102 1.19893 0.96077 0.94151 0.95764 1.21185 0.99675 0.94263 0.97565 1.21128 0.97166 1.00128 0.93929 1.21043 0.99392 0.92758 1.00553 1.20922 0.98295 0.93590 0.93113 1.98374 1.67984 1.78040 1.60196 1.20999 0.98218 1.00547 0.92994 0.90477 0.92744 0.93300 0.95441 0.90928 0.84383 0.95823 0.91531 0.91930 0.93034 0.96888 0.97077 0.92784 0.85188 0.85064 0.85137 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.89 37.16 0.33 -0.91 16 2 C -0.05 -0.47 2.70 -91.77 -0.25 -0.72 16 3 H 0.08 0.70 7.88 -51.93 -0.41 0.29 16 4 C 0.07 0.72 4.81 -3.83 -0.02 0.71 16 5 N -0.69 -9.00 5.95 -113.78 -0.68 -9.68 16 6 C 0.06 0.91 5.69 -3.83 -0.02 0.89 16 7 C -0.10 -1.94 5.41 -26.73 -0.14 -2.09 16 8 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 9 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 10 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 11 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 12 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 13 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 17 C -0.06 -0.52 4.78 -104.63 -0.50 -1.02 16 18 C -0.11 -0.90 8.76 -39.58 -0.35 -1.25 16 19 C -0.11 -0.78 10.04 -39.59 -0.40 -1.18 16 20 C -0.12 -0.94 9.83 -39.55 -0.39 -1.33 16 21 C -0.03 -0.29 6.32 -39.50 -0.25 -0.54 16 22 Cl -0.07 -0.65 28.96 -51.86 -1.50 -2.15 16 23 C -0.11 -0.98 9.46 -39.55 -0.37 -1.36 16 24 H 0.08 0.80 7.75 -51.93 -0.40 0.40 16 25 H 0.05 0.48 7.39 -51.93 -0.38 0.10 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.79 7.57 -51.92 -0.39 0.40 16 29 H 0.34 4.17 8.73 -39.29 -0.34 3.83 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 34 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 35 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.13 0.95 7.16 -52.48 -0.38 0.58 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.13 1.07 7.95 -52.49 -0.42 0.65 16 LS Contribution 343.43 15.07 5.18 5.18 Total: -1.00 -30.63 343.43 -10.26 -40.89 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.46 Total: -1.35 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -2.90 Total: -22.73 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.10 Total: -37.09 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.63 -10.26 -40.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187858187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.645 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds