Wall clock time and date at job start Tue Mar 31 2020 05:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46821 * 2 1 4 4 H 1.08998 * 109.46600 * 179.30321 * 3 2 1 5 5 C 1.50699 * 109.46941 * 299.30387 * 3 2 1 6 6 H 1.07995 * 119.99949 * 120.00698 * 5 3 2 7 7 C 1.37876 * 120.00171 * 299.99812 * 5 3 2 8 8 N 1.31512 * 120.00227 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99910 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47172 * 89.99941 * 9 7 5 11 11 H 1.48496 * 109.47334 * 210.00047 * 9 7 5 12 12 H 1.48499 * 109.47201 * 329.99789 * 9 7 5 13 13 N 1.46904 * 109.47225 * 59.30372 * 3 2 1 14 14 C 1.46899 * 110.99584 * 85.94219 * 13 3 2 15 15 C 1.53000 * 109.46630 * 175.56169 * 14 13 3 16 16 H 1.09006 * 109.47122 * 305.00479 * 15 14 13 17 17 C 1.52998 * 109.47274 * 64.99986 * 15 14 13 18 18 C 1.50694 * 109.47250 * 185.00228 * 15 14 13 19 19 C 1.38262 * 119.99213 * 299.72401 * 18 15 14 20 20 C 1.38228 * 120.02464 * 179.76548 * 19 18 15 21 21 C 1.38232 * 120.01336 * 0.51185 * 20 19 18 22 22 C 1.38328 * 119.98698 * 359.74188 * 21 20 19 23 23 Cl 1.73602 * 120.01184 * 180.02562 * 22 21 20 24 24 C 1.38199 * 119.99672 * 120.00007 * 18 15 14 25 25 H 1.09004 * 109.46705 * 175.55927 * 1 2 3 26 26 H 1.08995 * 109.46916 * 55.56427 * 1 2 3 27 27 H 1.08992 * 109.47277 * 295.55978 * 1 2 3 28 28 H 1.08997 * 109.46934 * 119.99876 * 2 1 3 29 29 H 1.08997 * 109.47135 * 240.00370 * 2 1 3 30 30 H 0.97006 * 120.00033 * 179.97438 * 8 7 5 31 31 H 1.00899 * 110.99843 * 209.89691 * 13 3 2 32 32 H 1.08995 * 109.47219 * 295.55869 * 14 13 3 33 33 H 1.08999 * 109.47280 * 55.56546 * 14 13 3 34 34 H 1.09002 * 109.47556 * 179.97438 * 17 15 14 35 35 H 1.09000 * 109.47425 * 299.99738 * 17 15 14 36 36 H 1.09000 * 109.46983 * 59.99906 * 17 15 14 37 37 H 1.08000 * 119.98864 * 0.02562 * 19 18 15 38 38 H 1.08001 * 119.99059 * 180.25602 * 20 19 18 39 39 H 1.08002 * 120.00433 * 179.72604 * 21 20 19 40 40 H 1.07997 * 120.00391 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4425 0.0125 5 6 1.5518 2.1479 -1.2390 6 1 0.9299 3.0264 -1.1506 7 6 1.8992 1.6718 -2.4855 8 7 1.4735 2.2877 -3.5667 9 14 2.9746 0.1521 -2.6384 10 1 2.1162 -1.0587 -2.6890 11 1 3.7810 0.2394 -3.8822 12 1 3.8814 0.0673 -1.4655 13 7 1.5366 2.1399 1.1910 14 6 2.4193 1.9169 2.3438 15 6 1.9254 2.7450 3.5318 16 1 1.8496 3.7921 3.2384 17 6 0.5503 2.2376 3.9707 18 6 2.8980 2.6129 4.6752 19 6 3.1548 1.3701 5.2241 20 6 4.0504 1.2475 6.2697 21 6 4.6820 2.3688 6.7743 22 6 4.4215 3.6131 6.2291 23 17 5.2147 5.0217 6.8619 24 6 3.5288 3.7346 5.1789 25 1 -0.3633 -1.0246 -0.0796 26 1 -0.3633 0.5811 -0.8476 27 1 -0.3633 0.4434 0.9270 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.7183 1.9529 -4.4437 31 1 1.4197 3.1257 1.0103 32 1 2.4104 0.8598 2.6091 33 1 3.4348 2.2189 2.0877 34 1 0.1986 2.8272 4.8173 35 1 -0.1533 2.3333 3.1436 36 1 0.6260 1.1906 4.2640 37 1 2.6586 0.4942 4.8329 38 1 4.2538 0.2759 6.6953 39 1 5.3784 2.2734 7.5943 40 1 3.3250 4.7058 4.7528 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188486983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:00 Heat of formation + Delta-G solvation = 4.253457 kcal Electronic energy + Delta-G solvation = -19671.310507 eV Core-core repulsion = 16704.129722 eV Total energy + Delta-G solvation = -2967.180785 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.75864 -37.17398 -36.51746 -34.71820 -32.09885 -31.08777 -30.83329 -29.19972 -26.90700 -24.90524 -23.14184 -23.06474 -22.59518 -20.01985 -19.33304 -17.15780 -16.51305 -15.79563 -15.54164 -15.37883 -14.35859 -14.32179 -13.97741 -13.77004 -13.37601 -13.31153 -13.17802 -12.74414 -12.35260 -12.07236 -11.92122 -11.73739 -11.70886 -11.35873 -11.15698 -11.08933 -10.84863 -10.64663 -10.56563 -10.32638 -10.16571 -9.95375 -9.33114 -9.03332 -8.95672 -8.75281 -8.57907 -7.48074 -6.11052 -4.09776 1.02567 1.13288 1.96229 3.26190 3.35755 3.37364 3.48937 4.37673 4.50398 4.65334 4.89304 5.01036 5.12791 5.21391 5.25179 5.27824 5.42163 5.54801 5.65344 5.82451 5.96185 6.00747 6.08809 6.14794 6.18108 6.19931 6.22933 6.28346 6.43989 6.53033 6.58936 6.69056 6.73479 6.91023 7.09374 7.24320 7.47354 7.60401 7.91300 8.32678 8.59877 8.93630 9.51750 11.01751 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024418 B = 0.003667 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.434700 B = 7634.480733 C = 7889.352274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.112 4.112 3 C 0.185 3.815 4 H -0.001 1.001 5 C -0.513 4.513 6 H 0.079 0.921 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.673 5.673 14 C 0.067 3.933 15 C -0.053 4.053 16 H 0.078 0.922 17 C -0.132 4.132 18 C -0.052 4.052 19 C -0.109 4.109 20 C -0.107 4.107 21 C -0.122 4.122 22 C -0.032 4.032 23 Cl -0.078 7.078 24 C -0.110 4.110 25 H 0.019 0.981 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.029 0.971 29 H 0.040 0.960 30 H 0.264 0.736 31 H 0.338 0.662 32 H 0.065 0.935 33 H 0.021 0.979 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 -0.412 20.496 20.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.150 4.150 3 C 0.076 3.924 4 H 0.017 0.983 5 C -0.551 4.551 6 H 0.097 0.903 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.195 1.195 13 N -0.304 5.304 14 C -0.063 4.063 15 C -0.072 4.072 16 H 0.097 0.903 17 C -0.189 4.189 18 C -0.053 4.053 19 C -0.127 4.127 20 C -0.125 4.125 21 C -0.140 4.140 22 C -0.059 4.059 23 Cl -0.049 7.049 24 C -0.128 4.128 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.157 0.843 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.829 -0.786 20.513 20.882 hybrid contribution 1.558 -0.220 -0.402 1.624 sum 5.387 -1.005 20.111 20.845 Atomic orbital electron populations 1.21464 0.95537 0.98262 1.02889 1.21734 0.97379 0.98190 0.97674 1.19572 0.92794 0.91304 0.88686 0.98305 1.21027 1.32420 1.13254 0.88447 0.90347 1.24890 0.95481 0.96741 0.95770 1.69886 1.45416 1.40459 0.97838 0.86871 0.80847 0.83835 0.76772 1.20396 1.22588 1.19466 1.60514 1.48576 1.16390 1.04883 1.21997 0.94266 0.99076 0.90937 1.20253 0.93796 1.01101 0.92042 0.90342 1.21722 0.95713 1.00278 1.01224 1.19975 0.96458 0.92446 0.96434 1.21192 0.97826 0.97627 0.96031 1.21105 0.96503 0.98172 0.96710 1.20996 1.01221 0.90885 1.00947 1.20903 0.98661 0.88162 0.98168 1.98364 1.79387 1.40817 1.86339 1.21017 0.96414 0.99609 0.95794 0.96207 0.91368 0.92695 0.95216 0.94202 0.92616 0.84344 0.91688 0.96038 0.93695 0.90395 0.92958 0.85225 0.85234 0.85304 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.52 37.16 0.35 -2.19 16 2 C -0.11 -2.42 5.29 -26.72 -0.14 -2.56 16 3 C 0.19 4.22 1.90 -68.86 -0.13 4.09 16 4 H 0.00 -0.01 6.77 -51.93 -0.35 -0.37 16 5 C -0.51 -13.76 7.87 -34.44 -0.27 -14.03 16 6 H 0.08 2.27 7.85 -52.49 -0.41 1.86 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 9 Si 0.89 21.87 24.38 -169.99 -4.14 17.73 16 10 H -0.28 -6.70 6.86 56.52 0.39 -6.32 16 11 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 13 N -0.67 -12.63 5.08 -107.95 -0.55 -13.18 16 14 C 0.07 1.06 4.67 -3.82 -0.02 1.04 16 15 C -0.05 -0.68 2.66 -91.78 -0.24 -0.92 16 16 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 17 C -0.13 -1.60 8.89 37.16 0.33 -1.27 16 18 C -0.05 -0.62 4.78 -104.63 -0.50 -1.12 16 19 C -0.11 -1.19 8.76 -39.58 -0.35 -1.53 16 20 C -0.11 -1.03 10.05 -39.59 -0.40 -1.43 16 21 C -0.12 -1.22 9.83 -39.55 -0.39 -1.60 16 22 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 16 23 Cl -0.08 -0.82 28.96 -51.86 -1.50 -2.32 16 24 C -0.11 -1.28 9.46 -39.55 -0.37 -1.65 16 25 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 1.58 7.09 -51.93 -0.37 1.21 16 27 H 0.05 1.05 7.73 -51.93 -0.40 0.65 16 28 H 0.03 0.58 7.62 -51.93 -0.40 0.18 16 29 H 0.04 0.92 3.26 -51.93 -0.17 0.75 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.34 6.42 8.13 -39.29 -0.32 6.10 16 32 H 0.06 1.02 7.06 -51.93 -0.37 0.65 16 33 H 0.02 0.36 7.94 -51.93 -0.41 -0.05 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 1.05 7.75 -51.93 -0.40 0.64 16 36 H 0.05 0.61 7.37 -51.93 -0.38 0.22 16 37 H 0.13 1.32 7.16 -52.49 -0.38 0.94 16 38 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.13 1.43 7.95 -52.49 -0.42 1.01 16 LS Contribution 330.56 15.07 4.98 4.98 Total: -1.00 -28.49 330.56 -8.97 -37.45 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.06 Total: 3.26 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -2.48 Total: -21.84 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.23 Total: -39.27 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.14 Total: 17.73 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.49 -8.97 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188486983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.708 kcal (2) G-P(sol) polarization free energy of solvation -28.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds