Wall clock time and date at job start Tue Mar 31 2020 05:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47005 * 2 1 4 4 C 1.50702 * 109.47161 * 240.00496 * 2 1 3 5 5 H 1.07996 * 119.99963 * 239.99681 * 4 2 1 6 6 C 1.37879 * 119.99841 * 59.99897 * 4 2 1 7 7 N 1.31510 * 120.00436 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99869 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46841 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47008 * 119.99618 * 8 6 4 11 11 H 1.48497 * 109.47326 * 239.99820 * 8 6 4 12 12 N 1.46900 * 109.47597 * 120.00171 * 2 1 3 13 13 C 1.46891 * 111.00120 * 176.04356 * 12 2 1 14 14 C 1.46898 * 110.99814 * 300.00361 * 12 2 1 15 15 C 1.53006 * 109.47006 * 169.99400 * 14 12 2 16 16 H 1.09007 * 109.46744 * 54.99841 * 15 14 12 17 17 C 1.52995 * 109.47234 * 295.00220 * 15 14 12 18 18 C 1.50703 * 109.47148 * 174.99877 * 15 14 12 19 19 C 1.38263 * 119.99140 * 240.00438 * 18 15 14 20 20 C 1.38221 * 120.02193 * 179.97438 * 19 18 15 21 21 C 1.38235 * 120.01568 * 0.02562 * 20 19 18 22 22 C 1.38330 * 119.98302 * 0.02562 * 21 20 19 23 23 Cl 1.73604 * 120.00824 * 180.02562 * 22 21 20 24 24 C 1.38186 * 119.99000 * 59.72502 * 18 15 14 25 25 H 1.08997 * 109.47625 * 299.99566 * 1 2 3 26 26 H 1.08997 * 109.47577 * 59.99553 * 1 2 3 27 27 H 1.09004 * 109.47110 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00674 * 180.02562 * 7 6 4 29 29 H 1.09008 * 109.47294 * 183.95307 * 13 12 2 30 30 H 1.08994 * 109.47718 * 303.95889 * 13 12 2 31 31 H 1.09007 * 109.47181 * 63.96365 * 13 12 2 32 32 H 1.09001 * 109.47062 * 49.99654 * 14 12 2 33 33 H 1.08993 * 109.47084 * 289.99101 * 14 12 2 34 34 H 1.09002 * 109.47112 * 179.97438 * 17 15 14 35 35 H 1.09006 * 109.47389 * 299.99793 * 17 15 14 36 36 H 1.09003 * 109.47743 * 59.99455 * 17 15 14 37 37 H 1.07999 * 119.98578 * 359.97297 * 19 18 15 38 38 H 1.07997 * 119.98845 * 180.02562 * 20 19 18 39 39 H 1.07999 * 120.00638 * 180.02562 * 21 20 19 40 40 H 1.07995 * 120.01155 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2391 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 3.1464 -2.2867 -3.6039 10 1 1.1659 -1.5863 -4.8162 11 1 3.1464 -0.1870 -4.8166 12 7 2.0197 -0.6925 1.1994 13 6 3.4850 -0.7945 1.1869 14 6 1.5487 -0.0265 2.4210 15 6 1.8627 -0.9045 3.6341 16 1 2.9276 -1.1367 3.6485 17 6 1.0588 -2.2032 3.5454 18 6 1.4916 -0.1692 4.8961 19 6 2.4581 0.1042 5.8463 20 6 2.1185 0.7791 7.0037 21 6 0.8123 1.1807 7.2122 22 6 -0.1552 0.9065 6.2623 23 17 -1.7956 1.4111 6.5231 24 6 0.1867 0.2368 5.1006 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7088 1.1617 -3.4843 29 1 3.8164 -1.3722 2.0499 30 1 3.8069 -1.2914 0.2717 31 1 3.9192 0.2044 1.2300 32 1 0.4722 0.1323 2.3563 33 1 2.0519 0.9344 2.5281 34 1 1.2828 -2.8290 4.4093 35 1 -0.0062 -1.9711 3.5309 36 1 1.3271 -2.7352 2.6326 37 1 3.4786 -0.2098 5.6840 38 1 2.8739 0.9927 7.7454 39 1 0.5473 1.7084 8.1164 40 1 -0.5673 0.0269 4.3565 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249936946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:10 Heat of formation + Delta-G solvation = 13.071421 kcal Electronic energy + Delta-G solvation = -19880.443244 eV Core-core repulsion = 16913.644834 eV Total energy + Delta-G solvation = -2966.798409 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.71301 -37.42530 -36.49016 -34.32540 -32.39492 -30.79890 -29.60582 -28.90511 -26.79396 -24.77100 -24.02330 -22.88537 -22.37895 -20.11074 -19.01113 -17.12504 -16.32472 -15.78308 -15.37512 -15.07110 -14.27655 -14.18969 -13.96033 -13.76491 -13.41730 -13.10039 -12.82082 -12.35982 -12.34075 -11.94668 -11.65712 -11.57230 -11.24466 -11.17011 -11.10525 -10.96674 -10.82756 -10.73084 -10.50030 -10.18405 -10.09396 -10.01257 -9.70186 -8.95125 -8.83264 -8.67975 -8.41967 -7.15589 -6.00723 -4.05173 1.10038 1.21449 2.06216 3.29556 3.37592 3.41498 3.56664 4.40003 4.61979 4.70190 4.94308 5.11354 5.19491 5.27317 5.33054 5.35367 5.57118 5.62793 5.69517 5.92399 6.09717 6.14109 6.14546 6.20102 6.20850 6.32759 6.40484 6.44676 6.60515 6.73208 6.75991 6.80008 6.87917 7.06522 7.17410 7.53487 7.73883 7.83508 8.21514 8.33214 8.60998 9.01729 9.59931 11.06157 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026754 B = 0.003808 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.336734 B = 7350.316598 C = 7967.264474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.212 3.788 3 H -0.003 1.003 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.533 5.533 13 C 0.034 3.966 14 C 0.059 3.941 15 C -0.052 4.052 16 H 0.079 0.921 17 C -0.132 4.132 18 C -0.051 4.051 19 C -0.115 4.115 20 C -0.108 4.108 21 C -0.123 4.123 22 C -0.032 4.032 23 Cl -0.077 7.077 24 C -0.104 4.104 25 H 0.008 0.992 26 H 0.084 0.916 27 H 0.034 0.966 28 H 0.259 0.741 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.009 0.991 32 H 0.076 0.924 33 H 0.020 0.980 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.449 -0.740 18.459 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.106 3.894 3 H 0.014 0.986 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.258 5.258 13 C -0.114 4.114 14 C -0.069 4.069 15 C -0.071 4.071 16 H 0.097 0.903 17 C -0.189 4.189 18 C -0.052 4.052 19 C -0.134 4.134 20 C -0.126 4.126 21 C -0.142 4.142 22 C -0.058 4.058 23 Cl -0.048 7.048 24 C -0.122 4.122 25 H 0.026 0.974 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.027 0.973 32 H 0.094 0.906 33 H 0.038 0.962 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.024 -1.055 18.311 18.341 hybrid contribution 0.447 0.615 -0.802 1.105 sum 0.470 -0.440 17.509 17.521 Atomic orbital electron populations 1.21845 0.97767 0.99613 0.99820 1.19234 0.92296 0.91959 0.85918 0.98579 1.21196 1.30907 1.12231 0.89742 0.91773 1.24934 0.95237 0.95072 0.99025 1.69901 1.37011 1.23066 1.23276 0.86484 0.78589 0.79604 0.82979 1.19749 1.21046 1.21205 1.62101 1.09058 1.52569 1.02033 1.22266 0.89046 0.98703 1.01432 1.22161 1.01031 0.93897 0.89847 1.20279 1.00865 0.95429 0.90482 0.90257 1.21702 0.99407 0.95807 1.01956 1.20040 0.92403 0.96560 0.96196 1.21212 0.99526 0.98870 0.93758 1.21061 0.95545 0.98305 0.97699 1.20976 0.92526 1.01658 0.99031 1.20929 0.85839 1.02024 0.97016 1.98366 1.19937 1.89974 1.96537 1.20992 0.97120 0.98069 0.96045 0.97354 0.89738 0.94653 0.93068 0.93784 0.90461 0.97281 0.90591 0.96177 0.93901 0.93013 0.90374 0.85543 0.85352 0.85357 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.76 37.15 0.33 -2.89 16 2 C 0.21 5.29 2.06 -68.87 -0.14 5.15 16 3 H 0.00 -0.09 8.14 -51.93 -0.42 -0.52 16 4 C -0.50 -13.56 7.88 -34.44 -0.27 -13.83 16 5 H 0.06 1.72 6.40 -52.49 -0.34 1.39 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -25.41 11.32 55.43 0.63 -24.78 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.53 -11.06 4.08 -236.29 -0.96 -12.03 16 13 C 0.03 0.65 9.05 60.06 0.54 1.19 16 14 C 0.06 1.05 3.90 -3.82 -0.01 1.04 16 15 C -0.05 -0.74 2.48 -91.77 -0.23 -0.96 16 16 H 0.08 1.09 6.07 -51.93 -0.32 0.78 16 17 C -0.13 -1.83 8.90 37.15 0.33 -1.50 16 18 C -0.05 -0.66 4.78 -104.63 -0.50 -1.16 16 19 C -0.12 -1.29 9.67 -39.58 -0.38 -1.68 16 20 C -0.11 -1.07 10.05 -39.59 -0.40 -1.47 16 21 C -0.12 -1.30 9.83 -39.55 -0.39 -1.69 16 22 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 23 Cl -0.08 -0.89 28.96 -51.86 -1.50 -2.40 16 24 C -0.10 -1.36 8.55 -39.55 -0.34 -1.70 16 25 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 26 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.04 0.71 6.37 -51.92 -0.33 0.37 16 30 H 0.08 1.59 6.10 -51.93 -0.32 1.27 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 1.39 5.24 -51.93 -0.27 1.12 16 33 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.72 7.40 -51.93 -0.38 0.33 16 36 H 0.08 1.22 7.75 -51.93 -0.40 0.82 16 37 H 0.13 1.21 7.95 -52.49 -0.42 0.79 16 38 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.13 1.79 7.16 -52.49 -0.38 1.41 16 LS Contribution 330.58 15.07 4.98 4.98 Total: -1.00 -28.07 330.58 -9.57 -37.63 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.88 Total: -0.93 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -1.81 Total: -18.63 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.34 Total: -36.81 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.07 -9.57 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249936946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.705 kcal (2) G-P(sol) polarization free energy of solvation -28.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds