Wall clock time and date at job start Tue Mar 31 2020 05:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47336 * 2 1 4 4 C 1.50702 * 109.47106 * 240.00181 * 2 1 3 5 5 C 1.38245 * 119.98463 * 120.00042 * 4 2 1 6 6 C 1.38218 * 120.01168 * 179.97438 * 5 4 2 7 7 C 1.38355 * 119.98567 * 359.97438 * 6 5 4 8 8 Cl 1.73595 * 120.01277 * 179.97438 * 7 6 5 9 9 C 1.38354 * 119.97288 * 359.97438 * 7 6 5 10 10 C 1.38214 * 119.98965 * 0.02562 * 9 7 6 11 11 C 1.52999 * 109.47146 * 120.00253 * 2 1 3 12 12 H 1.08995 * 109.47005 * 60.00039 * 11 2 1 13 13 C 1.52997 * 109.47168 * 180.02562 * 11 2 1 14 14 N 1.46904 * 109.46933 * 299.99656 * 11 2 1 15 15 C 1.46893 * 111.00418 * 298.95870 * 14 11 2 16 16 C 1.46895 * 110.99828 * 174.99898 * 14 11 2 17 17 C 1.50705 * 109.47047 * 190.00423 * 16 14 11 18 18 H 1.07993 * 120.00004 * 0.02562 * 17 16 14 19 19 C 1.37880 * 119.99785 * 180.02562 * 17 16 14 20 20 N 1.31507 * 120.00434 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99518 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47186 * 90.00114 * 21 19 17 23 23 H 1.48505 * 109.46863 * 209.99904 * 21 19 17 24 24 H 1.48499 * 109.47341 * 329.99549 * 21 19 17 25 25 H 1.08995 * 109.47136 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47375 * 300.00482 * 1 2 3 27 27 H 1.09009 * 109.47022 * 60.00156 * 1 2 3 28 28 H 1.07999 * 119.99425 * 359.72540 * 5 4 2 29 29 H 1.07992 * 120.00579 * 179.97438 * 6 5 4 30 30 H 1.08002 * 120.00754 * 180.02562 * 9 7 6 31 31 H 1.08001 * 119.99651 * 180.02562 * 10 9 7 32 32 H 1.09002 * 109.47648 * 59.99542 * 13 11 2 33 33 H 1.09003 * 109.47506 * 180.02562 * 13 11 2 34 34 H 1.09003 * 109.46807 * 299.99764 * 13 11 2 35 35 H 1.09001 * 109.47492 * 59.99595 * 15 14 11 36 36 H 1.08999 * 109.47558 * 179.97438 * 15 14 11 37 37 H 1.09005 * 109.46755 * 299.99593 * 15 14 11 38 38 H 1.09001 * 109.47368 * 310.00411 * 16 14 11 39 39 H 1.08998 * 109.47481 * 70.00412 * 16 14 11 40 40 H 0.96996 * 120.00390 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.8271 -0.0382 -2.1403 6 6 3.2886 -0.6893 -3.2688 7 6 2.9553 -2.0142 -3.4875 8 17 3.5340 -2.8325 -4.9049 9 6 2.1608 -2.6867 -2.5761 10 6 1.6999 -2.0345 -1.4480 11 6 2.0400 -0.7213 1.2492 12 1 1.6767 -1.7489 1.2491 13 6 3.5699 -0.7207 1.2495 14 7 1.5503 -0.0288 2.4487 15 6 2.0416 1.3548 2.4952 16 6 1.9213 -0.7604 3.6672 17 6 1.2020 -0.1642 4.8497 18 1 0.5357 0.6741 4.7099 19 6 1.3947 -0.6890 6.1101 20 7 2.2057 -1.7101 6.2803 21 14 0.5037 0.0506 7.5759 22 1 -0.8003 -0.6356 7.7603 23 1 1.3312 -0.1224 8.7969 24 1 0.2722 1.4976 7.3359 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 3.0841 0.9971 -1.9712 29 1 3.9091 -0.1640 -3.9796 30 1 1.9007 -3.7210 -2.7460 31 1 1.0800 -2.5594 -0.7362 32 1 3.9330 0.3070 1.2497 33 1 3.9334 -1.2350 2.1393 34 1 3.9336 -1.2343 0.3595 35 1 1.6937 1.8938 1.6140 36 1 1.6639 1.8445 3.3928 37 1 3.1315 1.3529 2.5132 38 1 1.6403 -1.8083 3.5616 39 1 2.9977 -0.6868 3.8218 40 1 2.3416 -2.0791 7.1670 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267078446.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:42 Heat of formation + Delta-G solvation = 9.823811 kcal Electronic energy + Delta-G solvation = -19894.329469 eV Core-core repulsion = 16927.390233 eV Total energy + Delta-G solvation = -2966.939236 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.89847 -37.80264 -36.51930 -33.92265 -32.31525 -31.16009 -29.41240 -29.07679 -27.10331 -25.09794 -23.88038 -22.97314 -22.46142 -20.57918 -18.69363 -17.25198 -16.46329 -15.86944 -15.24740 -14.78931 -14.47323 -14.13883 -14.01084 -13.63722 -13.45396 -13.26165 -13.05267 -12.84161 -12.26113 -12.02878 -11.75990 -11.66015 -11.49083 -11.21443 -11.09254 -10.93355 -10.91021 -10.84421 -10.64993 -10.50896 -10.37147 -10.13725 -9.70012 -9.21245 -9.11357 -8.54737 -8.42748 -7.17458 -6.02421 -4.03463 1.09118 1.22132 2.02288 3.31763 3.37854 3.41023 3.56671 4.41373 4.63073 4.72330 4.79235 5.08016 5.18563 5.28354 5.33614 5.36877 5.46994 5.55806 5.73814 5.78606 5.86277 5.92627 6.08266 6.10769 6.13739 6.21234 6.23820 6.29141 6.33616 6.47909 6.58751 6.66588 6.74406 6.77444 6.82058 7.31928 7.39277 7.80828 8.10207 8.21572 8.56847 9.04450 9.60649 11.08382 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037665 B = 0.003328 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.213826 B = 8410.990937 C = 8625.511030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 H 0.078 0.922 4 C -0.052 4.052 5 C -0.108 4.108 6 C -0.110 4.110 7 C -0.046 4.046 8 Cl -0.082 7.082 9 C -0.108 4.108 10 C -0.102 4.102 11 C 0.090 3.910 12 H 0.075 0.925 13 C -0.185 4.185 14 N -0.530 5.530 15 C 0.030 3.970 16 C 0.193 3.807 17 C -0.506 4.506 18 H 0.063 0.937 19 C 0.055 3.945 20 N -0.899 5.899 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.274 1.274 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.015 0.985 38 H 0.027 0.973 39 H -0.006 1.006 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.249 1.346 -19.187 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.068 4.068 3 H 0.096 0.904 4 C -0.053 4.053 5 C -0.127 4.127 6 C -0.129 4.129 7 C -0.072 4.072 8 Cl -0.054 7.054 9 C -0.127 4.127 10 C -0.120 4.120 11 C -0.019 4.019 12 H 0.093 0.907 13 C -0.243 4.243 14 N -0.254 5.254 15 C -0.118 4.118 16 C 0.068 3.932 17 C -0.545 4.545 18 H 0.081 0.919 19 C -0.146 4.146 20 N -0.539 5.539 21 Si 0.725 3.275 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.012 0.988 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.850 1.169 -19.175 19.230 hybrid contribution 0.675 0.110 0.773 1.032 sum 1.525 1.279 -18.402 18.509 Atomic orbital electron populations 1.21702 0.93392 1.02064 1.01804 1.20319 0.96854 0.98873 0.90734 0.90391 1.20123 0.95283 0.94059 0.95818 1.21051 0.97819 1.00182 0.93606 1.20989 1.00682 0.92796 0.98393 1.20875 1.01855 0.93757 0.90706 1.98354 1.87962 1.79279 1.39758 1.21041 0.97513 1.00309 0.93801 1.21067 0.99799 0.94385 0.96720 1.21672 0.92068 0.97940 0.90263 0.90660 1.22463 0.98417 1.01683 1.01771 1.62330 1.58391 1.02009 1.02627 1.22296 0.96959 0.91352 1.01230 1.19714 0.94476 0.93741 0.85253 1.21176 1.26052 1.16075 0.91178 0.91910 1.24982 0.95499 0.95162 0.98992 1.69953 1.36899 1.24192 1.22819 0.86523 0.79540 0.79521 0.81954 1.20660 1.21389 1.19902 0.92879 0.90340 0.93907 0.85322 0.85324 0.85180 0.84839 0.92789 0.91975 0.93228 0.93575 0.90914 0.96649 0.95475 0.98823 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 8.85 37.16 0.33 -1.44 16 2 C -0.05 -0.66 1.81 -91.77 -0.17 -0.83 16 3 H 0.08 1.03 6.16 -51.93 -0.32 0.72 16 4 C -0.05 -0.64 3.52 -104.62 -0.37 -1.00 16 5 C -0.11 -1.20 9.67 -39.59 -0.38 -1.58 16 6 C -0.11 -1.16 9.83 -39.55 -0.39 -1.55 16 7 C -0.05 -0.51 6.32 -39.50 -0.25 -0.76 16 8 Cl -0.08 -0.85 28.96 -51.86 -1.50 -2.35 16 9 C -0.11 -1.20 9.83 -39.55 -0.39 -1.59 16 10 C -0.10 -1.21 8.71 -39.59 -0.34 -1.55 16 11 C 0.09 1.50 1.75 -67.71 -0.12 1.39 16 12 H 0.08 1.32 7.27 -51.93 -0.38 0.94 16 13 C -0.18 -3.03 8.25 37.16 0.31 -2.72 16 14 N -0.53 -10.74 3.98 -236.34 -0.94 -11.68 16 15 C 0.03 0.56 8.63 60.06 0.52 1.08 16 16 C 0.19 4.88 4.16 -4.98 -0.02 4.86 16 17 C -0.51 -13.94 8.46 -34.44 -0.29 -14.23 16 18 H 0.06 1.71 7.12 -52.49 -0.37 1.34 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 21 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H 0.05 0.70 7.39 -51.93 -0.38 0.31 16 26 H 0.08 1.19 7.60 -51.93 -0.39 0.79 16 27 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.13 1.22 7.94 -52.49 -0.42 0.80 16 29 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.13 1.53 7.10 -52.49 -0.37 1.16 16 32 H 0.05 0.86 6.38 -51.93 -0.33 0.52 16 33 H 0.06 1.17 6.75 -51.93 -0.35 0.82 16 34 H 0.05 0.74 7.22 -51.93 -0.37 0.36 16 35 H 0.05 0.72 6.33 -51.93 -0.33 0.39 16 36 H 0.07 1.47 6.76 -51.93 -0.35 1.12 16 37 H 0.02 0.28 6.28 -51.93 -0.33 -0.05 16 38 H 0.03 0.74 8.00 -51.93 -0.42 0.33 16 39 H -0.01 -0.16 6.94 -51.93 -0.36 -0.52 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 330.15 15.07 4.98 4.98 Total: -1.00 -28.72 330.15 -9.29 -38.01 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.88 Total: -1.15 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -1.66 Total: -18.49 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.20 Total: -37.44 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.72 -9.29 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267078446.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.838 kcal (2) G-P(sol) polarization free energy of solvation -28.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds