Wall clock time and date at job start Tue Mar 31 2020 05:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47336 * 2 1 4 4 C 1.50702 * 109.47106 * 240.00181 * 2 1 3 5 5 C 1.38245 * 119.98463 * 120.00042 * 4 2 1 6 6 C 1.38218 * 120.01168 * 179.97438 * 5 4 2 7 7 C 1.38355 * 119.98567 * 359.97438 * 6 5 4 8 8 Cl 1.73595 * 120.01277 * 179.97438 * 7 6 5 9 9 C 1.38354 * 119.97288 * 359.97438 * 7 6 5 10 10 C 1.38214 * 119.98965 * 0.02562 * 9 7 6 11 11 C 1.52999 * 109.47146 * 120.00253 * 2 1 3 12 12 H 1.08995 * 109.47005 * 60.00039 * 11 2 1 13 13 C 1.52997 * 109.47168 * 180.02562 * 11 2 1 14 14 N 1.46904 * 109.46933 * 299.99656 * 11 2 1 15 15 C 1.46893 * 111.00418 * 298.95870 * 14 11 2 16 16 C 1.46895 * 110.99828 * 174.99898 * 14 11 2 17 17 C 1.50705 * 109.47047 * 190.00423 * 16 14 11 18 18 H 1.07993 * 120.00004 * 0.02562 * 17 16 14 19 19 C 1.37880 * 119.99785 * 180.02562 * 17 16 14 20 20 N 1.31507 * 120.00434 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99518 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47186 * 90.00114 * 21 19 17 23 23 H 1.48505 * 109.46863 * 209.99904 * 21 19 17 24 24 H 1.48499 * 109.47341 * 329.99549 * 21 19 17 25 25 H 1.08995 * 109.47136 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47375 * 300.00482 * 1 2 3 27 27 H 1.09009 * 109.47022 * 60.00156 * 1 2 3 28 28 H 1.07999 * 119.99425 * 359.72540 * 5 4 2 29 29 H 1.07992 * 120.00579 * 179.97438 * 6 5 4 30 30 H 1.08002 * 120.00754 * 180.02562 * 9 7 6 31 31 H 1.08001 * 119.99651 * 180.02562 * 10 9 7 32 32 H 1.09002 * 109.47648 * 59.99542 * 13 11 2 33 33 H 1.09003 * 109.47506 * 180.02562 * 13 11 2 34 34 H 1.09003 * 109.46807 * 299.99764 * 13 11 2 35 35 H 1.09001 * 109.47492 * 59.99595 * 15 14 11 36 36 H 1.08999 * 109.47558 * 179.97438 * 15 14 11 37 37 H 1.09005 * 109.46755 * 299.99593 * 15 14 11 38 38 H 1.09001 * 109.47368 * 310.00411 * 16 14 11 39 39 H 1.08998 * 109.47481 * 70.00412 * 16 14 11 40 40 H 0.96996 * 120.00390 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.8271 -0.0382 -2.1403 6 6 3.2886 -0.6893 -3.2688 7 6 2.9553 -2.0142 -3.4875 8 17 3.5340 -2.8325 -4.9049 9 6 2.1608 -2.6867 -2.5761 10 6 1.6999 -2.0345 -1.4480 11 6 2.0400 -0.7213 1.2492 12 1 1.6767 -1.7489 1.2491 13 6 3.5699 -0.7207 1.2495 14 7 1.5503 -0.0288 2.4487 15 6 2.0416 1.3548 2.4952 16 6 1.9213 -0.7604 3.6672 17 6 1.2020 -0.1642 4.8497 18 1 0.5357 0.6741 4.7099 19 6 1.3947 -0.6890 6.1101 20 7 2.2057 -1.7101 6.2803 21 14 0.5037 0.0506 7.5759 22 1 -0.8003 -0.6356 7.7603 23 1 1.3312 -0.1224 8.7969 24 1 0.2722 1.4976 7.3359 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 3.0841 0.9971 -1.9712 29 1 3.9091 -0.1640 -3.9796 30 1 1.9007 -3.7210 -2.7460 31 1 1.0800 -2.5594 -0.7362 32 1 3.9330 0.3070 1.2497 33 1 3.9334 -1.2350 2.1393 34 1 3.9336 -1.2343 0.3595 35 1 1.6937 1.8938 1.6140 36 1 1.6639 1.8445 3.3928 37 1 3.1315 1.3529 2.5132 38 1 1.6403 -1.8083 3.5616 39 1 2.9977 -0.6868 3.8218 40 1 2.3416 -2.0791 7.1670 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267078446.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:41 Heat of formation + Delta-G solvation = -4.783286 kcal Electronic energy + Delta-G solvation = -19894.962880 eV Core-core repulsion = 16927.390233 eV Total energy + Delta-G solvation = -2967.572647 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91242 -39.10762 -37.42283 -35.44367 -34.13622 -32.00443 -30.83622 -30.12213 -28.95668 -26.80285 -25.06883 -24.17638 -23.64439 -21.92521 -20.02503 -18.52957 -18.15935 -17.06694 -16.57771 -16.10813 -15.94062 -15.56993 -15.34663 -14.65545 -14.52927 -14.37085 -14.32645 -14.23903 -14.00866 -13.30532 -13.07505 -12.92855 -12.74399 -12.65618 -12.48723 -12.44310 -12.37221 -12.15350 -11.99826 -11.85009 -11.78489 -11.62233 -11.30298 -11.08048 -10.58340 -9.95751 -9.46869 -8.86337 -8.17628 -6.27176 0.20232 0.37657 1.18791 1.42096 1.43255 1.54090 2.41711 2.68406 3.14895 3.35093 3.71525 3.94885 3.99883 4.01678 4.22186 4.37819 4.41964 4.46424 4.54876 4.58613 4.73675 4.78119 4.79835 4.91339 4.99823 5.04957 5.11601 5.14141 5.17000 5.24385 5.29788 5.33765 5.39570 5.42438 5.57117 5.68932 5.74045 5.88589 6.10500 6.40884 6.72544 6.90680 7.42507 8.93130 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037665 B = 0.003328 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.213826 B = 8410.990937 C = 8625.511030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.036 4.036 3 H 0.088 0.912 4 C -0.063 4.063 5 C -0.106 4.106 6 C -0.110 4.110 7 C -0.052 4.052 8 Cl -0.076 7.076 9 C -0.113 4.113 10 C -0.111 4.111 11 C 0.090 3.910 12 H 0.061 0.939 13 C -0.173 4.173 14 N -0.534 5.534 15 C 0.034 3.966 16 C 0.211 3.789 17 C -0.520 4.520 18 H 0.064 0.936 19 C 0.000 4.000 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.263 1.263 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.141 0.859 31 H 0.130 0.870 32 H 0.062 0.938 33 H 0.028 0.972 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.015 0.985 38 H -0.004 1.004 39 H -0.034 1.034 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 2.746 -20.615 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.054 4.054 3 H 0.106 0.894 4 C -0.064 4.064 5 C -0.124 4.124 6 C -0.128 4.128 7 C -0.078 4.078 8 Cl -0.047 7.047 9 C -0.132 4.132 10 C -0.129 4.129 11 C -0.019 4.019 12 H 0.079 0.921 13 C -0.232 4.232 14 N -0.257 5.257 15 C -0.114 4.114 16 C 0.085 3.915 17 C -0.559 4.559 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.577 5.577 21 Si 0.792 3.208 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.187 1.187 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.166 0.834 29 H 0.167 0.833 30 H 0.159 0.841 31 H 0.148 0.852 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.014 0.986 39 H -0.016 1.016 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.554 2.580 -20.630 20.798 hybrid contribution 0.795 -0.373 1.111 1.416 sum 1.350 2.207 -19.518 19.689 Atomic orbital electron populations 1.21658 0.93283 1.01891 1.01810 1.20148 0.96872 0.98929 0.89471 0.89355 1.19999 0.96463 0.94212 0.95716 1.21252 0.96961 1.01043 0.93189 1.21236 1.00447 0.92598 0.98547 1.21048 1.01715 0.94207 0.90874 1.98358 1.87837 1.79224 1.39330 1.21178 0.97475 1.00941 0.93573 1.21118 1.00126 0.94583 0.97077 1.21728 0.92354 0.97504 0.90317 0.92111 1.22339 0.98014 1.01937 1.00928 1.62219 1.58882 1.02708 1.01909 1.22295 0.96902 0.90226 1.02016 1.19310 0.92377 0.92546 0.87309 1.21518 1.26050 1.16081 0.92222 0.91791 1.25895 0.96232 0.95500 1.02122 1.70087 1.38388 1.25604 1.23596 0.85422 0.78263 0.79129 0.78035 1.19991 1.21023 1.18736 0.93258 0.92251 0.91830 0.83402 0.83347 0.84100 0.85216 0.91919 0.95287 0.91457 0.89925 0.92889 0.96684 0.98593 1.01636 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.85 71.98 0.64 -2.63 16 2 C -0.04 -0.90 1.81 -11.54 -0.02 -0.92 16 3 H 0.09 2.07 6.16 -2.39 -0.01 2.06 16 4 C -0.06 -1.42 3.52 -19.86 -0.07 -1.49 16 5 C -0.11 -2.03 9.67 22.27 0.22 -1.81 16 6 C -0.11 -2.01 9.83 22.29 0.22 -1.79 16 7 C -0.05 -1.05 6.32 22.33 0.14 -0.90 16 8 Cl -0.08 -1.43 28.96 -2.72 -0.08 -1.51 16 9 C -0.11 -2.35 9.83 22.29 0.22 -2.13 16 10 C -0.11 -2.51 8.71 22.26 0.19 -2.31 16 11 C 0.09 3.01 1.75 44.91 0.08 3.08 16 12 H 0.06 2.20 7.27 -2.39 -0.02 2.18 16 13 C -0.17 -5.68 8.25 71.98 0.59 -5.08 16 14 N -0.53 -21.90 3.98 -901.64 -3.58 -25.48 16 15 C 0.03 1.22 8.63 127.69 1.10 2.33 16 16 C 0.21 11.09 4.16 85.56 0.36 11.45 16 17 C -0.52 -29.24 8.46 25.60 0.22 -29.03 16 18 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 19 C 0.00 0.01 5.46 84.66 0.46 0.47 16 20 N -0.94 -56.57 13.29 21.45 0.28 -56.28 16 21 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 24 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 25 H 0.05 1.26 7.39 -2.39 -0.02 1.25 16 26 H 0.06 1.73 7.60 -2.39 -0.02 1.71 16 27 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.15 2.23 7.94 -2.91 -0.02 2.20 16 29 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 30 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 31 H 0.13 2.96 7.10 -2.91 -0.02 2.94 16 32 H 0.06 1.92 6.38 -2.39 -0.02 1.91 16 33 H 0.03 1.12 6.75 -2.39 -0.02 1.10 16 34 H 0.07 1.94 7.22 -2.39 -0.02 1.92 16 35 H 0.08 2.39 6.33 -2.39 -0.02 2.37 16 36 H 0.05 2.12 6.76 -2.39 -0.02 2.11 16 37 H 0.01 0.54 6.28 -2.38 -0.01 0.52 16 38 H 0.00 -0.23 8.00 -2.39 -0.02 -0.25 16 39 H -0.03 -1.95 6.94 -2.39 -0.02 -1.96 16 40 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -62.53 330.15 4.01 -58.52 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.02 Total: 9.27 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 4.34 Total: -30.77 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -3.30 Total: -81.77 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -62.53 4.01 -58.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267078446.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.736 kcal (2) G-P(sol) polarization free energy of solvation -62.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds