Wall clock time and date at job start Tue Mar 31 2020 05:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09003 * 109.46867 * 2 1 4 4 C 1.52999 * 109.46581 * 240.00088 * 2 1 3 5 5 H 1.09000 * 109.46499 * 182.19140 * 4 2 1 6 6 C 1.52997 * 109.47326 * 302.18531 * 4 2 1 7 7 C 1.50697 * 109.47217 * 62.19098 * 4 2 1 8 8 C 1.38238 * 119.98829 * 280.23175 * 7 4 2 9 9 C 1.38212 * 120.01730 * 179.72960 * 8 7 4 10 10 C 1.38357 * 119.98238 * 0.54650 * 9 8 7 11 11 Cl 1.73596 * 120.01336 * 179.74856 * 10 9 8 12 12 C 1.38356 * 119.97410 * 359.72830 * 10 9 8 13 13 C 1.38210 * 119.98368 * 0.02562 * 12 10 9 14 14 N 1.46895 * 109.47117 * 120.00046 * 2 1 3 15 15 C 1.46902 * 110.99894 * 176.04557 * 14 2 1 16 16 C 1.46907 * 111.00087 * 299.99756 * 14 2 1 17 17 C 1.50697 * 109.46867 * 170.00459 * 16 14 2 18 18 H 1.07998 * 120.00060 * 359.97438 * 17 16 14 19 19 C 1.37880 * 119.99668 * 180.02562 * 17 16 14 20 20 N 1.31514 * 120.00121 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00056 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.46896 * 90.00013 * 21 19 17 23 23 H 1.48499 * 109.47139 * 210.00055 * 21 19 17 24 24 H 1.48505 * 109.47090 * 329.99970 * 21 19 17 25 25 H 1.09000 * 109.46607 * 300.46525 * 1 2 3 26 26 H 1.08993 * 109.47077 * 60.46446 * 1 2 3 27 27 H 1.08999 * 109.46555 * 180.46896 * 1 2 3 28 28 H 1.08998 * 109.47349 * 180.02562 * 6 4 2 29 29 H 1.09000 * 109.47631 * 300.00818 * 6 4 2 30 30 H 1.09000 * 109.46835 * 60.00814 * 6 4 2 31 31 H 1.08007 * 119.99038 * 0.02562 * 8 7 4 32 32 H 1.08000 * 120.00991 * 180.28010 * 9 8 7 33 33 H 1.08000 * 120.00326 * 179.97438 * 12 10 9 34 34 H 1.08004 * 119.98781 * 180.02562 * 13 12 10 35 35 H 1.09004 * 109.47023 * 59.99754 * 15 14 2 36 36 H 1.08991 * 109.47173 * 179.97438 * 15 14 2 37 37 H 1.09002 * 109.47278 * 300.00162 * 15 14 2 38 38 H 1.09001 * 109.46904 * 290.00295 * 16 14 2 39 39 H 1.09001 * 109.46631 * 50.00196 * 16 14 2 40 40 H 0.96995 * 119.99938 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 3.1293 -0.7554 -1.2298 6 6 1.4855 -2.1469 -1.2771 7 6 1.5824 0.0198 -2.4791 8 6 0.2920 -0.1468 -2.9461 9 6 -0.1300 0.5369 -4.0707 10 6 0.7430 1.3795 -4.7357 11 17 0.2158 2.2336 -6.1521 12 6 2.0361 1.5415 -4.2712 13 6 2.4552 0.8612 -3.1435 14 7 2.0198 -0.6925 1.1994 15 6 3.4852 -0.7945 1.1870 16 6 1.5488 -0.0263 2.4211 17 6 1.8582 -0.8911 3.6159 18 1 2.3546 -1.8407 3.4811 19 6 1.5065 -0.4703 4.8809 20 7 0.9016 0.6858 5.0449 21 14 1.8894 -1.5425 6.3619 22 1 3.2333 -1.1956 6.8899 23 1 0.8691 -1.3130 7.4162 24 1 1.8702 -2.9711 5.9570 25 1 -0.3632 0.5211 0.8858 26 1 -0.3633 0.5066 -0.8941 27 1 -0.3632 -1.0277 0.0084 28 1 1.8491 -2.6609 -2.1669 29 1 1.8164 -2.6830 -0.3876 30 1 0.3962 -2.1128 -1.2966 31 1 -0.3881 -0.8077 -2.4292 32 1 -1.1395 0.4101 -4.4328 33 1 2.7180 2.1988 -4.7902 34 1 3.4645 0.9879 -2.7806 35 1 3.9188 0.2052 1.1590 36 1 3.8211 -1.3108 2.0861 37 1 3.8031 -1.3531 0.3066 38 1 2.0520 0.9346 2.5280 39 1 0.4723 0.1324 2.3564 40 1 0.6539 0.9816 5.9349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267078451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:46 Heat of formation + Delta-G solvation = 15.270371 kcal Electronic energy + Delta-G solvation = -19916.503541 eV Core-core repulsion = 16949.800485 eV Total energy + Delta-G solvation = -2966.703056 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.97054 -37.72715 -36.49693 -34.01980 -32.26307 -31.24589 -29.68600 -28.86986 -27.19726 -24.75413 -24.38503 -22.70117 -22.38916 -20.64063 -18.59086 -17.15528 -16.49295 -15.79618 -15.47597 -14.84944 -14.63946 -14.44120 -13.98161 -13.67135 -13.46003 -13.35204 -12.96994 -12.42573 -12.06188 -11.97687 -11.72679 -11.70351 -11.47324 -11.38661 -11.10554 -10.94298 -10.90266 -10.78370 -10.75091 -10.49497 -10.21583 -10.12877 -9.62925 -9.17276 -9.07974 -8.53650 -8.41480 -7.21326 -6.02233 -4.03038 1.08063 1.21673 2.01856 3.31302 3.37762 3.41756 3.55208 4.41621 4.64467 4.70779 4.78919 5.10407 5.16515 5.26491 5.31093 5.34470 5.41716 5.55342 5.74654 5.82637 5.89081 6.01840 6.04173 6.07642 6.12981 6.21258 6.28294 6.30016 6.35642 6.53506 6.57875 6.69451 6.73987 6.77442 6.84619 7.34130 7.36713 7.81191 8.11701 8.22023 8.56914 9.04685 9.60828 11.08651 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038193 B = 0.003320 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.945739 B = 8431.592917 C = 8612.204676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.092 3.908 3 H 0.028 0.972 4 C -0.052 4.052 5 H 0.079 0.921 6 C -0.137 4.137 7 C -0.057 4.057 8 C -0.100 4.100 9 C -0.112 4.112 10 C -0.044 4.044 11 Cl -0.082 7.082 12 C -0.111 4.111 13 C -0.107 4.107 14 N -0.532 5.532 15 C 0.033 3.967 16 C 0.189 3.811 17 C -0.505 4.505 18 H 0.063 0.937 19 C 0.054 3.946 20 N -0.899 5.899 21 Si 0.896 3.104 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.008 0.992 36 H 0.074 0.926 37 H 0.048 0.952 38 H -0.012 1.012 39 H 0.038 0.962 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 -0.174 -19.327 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 H 0.046 0.954 4 C -0.070 4.070 5 H 0.097 0.903 6 C -0.194 4.194 7 C -0.058 4.058 8 C -0.118 4.118 9 C -0.130 4.130 10 C -0.070 4.070 11 Cl -0.053 7.053 12 C -0.129 4.129 13 C -0.126 4.126 14 N -0.256 5.256 15 C -0.116 4.116 16 C 0.064 3.936 17 C -0.544 4.544 18 H 0.081 0.919 19 C -0.147 4.147 20 N -0.539 5.539 21 Si 0.724 3.276 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.027 0.973 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.005 0.995 39 H 0.055 0.945 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.231 -0.458 -19.303 19.310 hybrid contribution 0.483 0.608 0.780 1.101 sum 0.713 0.150 -18.523 18.537 Atomic orbital electron populations 1.22091 0.94972 1.02404 1.01470 1.21444 0.95680 0.94561 0.90024 0.95433 1.20327 1.00504 0.95342 0.90859 0.90251 1.21809 1.01042 0.94755 1.01805 1.20138 0.93644 0.95919 0.96064 1.21179 0.96041 0.99371 0.95209 1.21049 0.99503 0.96617 0.95855 1.20888 0.95310 0.99255 0.91571 1.98355 1.90695 1.76599 1.39680 1.20991 0.94292 1.00463 0.97176 1.21061 1.00122 0.96535 0.94851 1.62170 1.08935 1.52290 1.02252 1.22281 0.89114 0.98754 1.01434 1.19811 0.96174 0.92408 0.85165 1.21168 1.37988 1.04772 0.90467 0.91915 1.24985 0.95410 0.95224 0.99039 1.69957 1.41147 1.20131 1.22651 0.86525 0.77885 0.80855 0.82309 1.20818 1.21302 1.19785 0.91745 0.92943 0.91716 0.93868 0.90487 0.92370 0.84504 0.85182 0.85277 0.85280 0.97298 0.90755 0.93354 0.99463 0.94454 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 7.62 37.16 0.28 -2.22 16 2 C 0.09 1.58 1.86 -67.71 -0.13 1.45 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.05 -0.71 2.03 -91.77 -0.19 -0.89 16 5 H 0.08 1.07 6.07 -51.93 -0.32 0.76 16 6 C -0.14 -1.80 8.19 37.16 0.30 -1.49 16 7 C -0.06 -0.71 4.63 -104.62 -0.48 -1.19 16 8 C -0.10 -1.16 7.01 -39.59 -0.28 -1.43 16 9 C -0.11 -1.22 9.83 -39.55 -0.39 -1.61 16 10 C -0.04 -0.49 6.32 -39.49 -0.25 -0.74 16 11 Cl -0.08 -0.85 28.96 -51.86 -1.50 -2.35 16 12 C -0.11 -1.20 9.83 -39.55 -0.39 -1.59 16 13 C -0.11 -1.23 9.67 -39.59 -0.38 -1.62 16 14 N -0.53 -10.91 3.95 -236.32 -0.93 -11.84 16 15 C 0.03 0.61 8.93 60.07 0.54 1.15 16 16 C 0.19 4.82 4.54 -4.97 -0.02 4.80 16 17 C -0.51 -13.96 8.46 -34.44 -0.29 -14.25 16 18 H 0.06 1.71 7.12 -52.49 -0.37 1.34 16 19 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 21 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H 0.06 1.22 6.22 -51.93 -0.32 0.90 16 26 H 0.05 0.75 5.53 -51.93 -0.29 0.46 16 27 H 0.06 1.03 6.41 -51.93 -0.33 0.70 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.15 7.67 -51.93 -0.40 0.75 16 30 H 0.06 0.73 4.87 -51.93 -0.25 0.48 16 31 H 0.14 1.48 5.65 -52.48 -0.30 1.18 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.13 1.31 8.03 -52.48 -0.42 0.89 16 35 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.07 1.50 6.76 -51.93 -0.35 1.15 16 37 H 0.05 0.75 6.19 -51.93 -0.32 0.43 16 38 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 39 H 0.04 1.01 5.84 -51.93 -0.30 0.70 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 324.75 15.07 4.89 4.89 Total: -1.00 -29.02 324.75 -9.25 -38.27 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.65 Total: -1.38 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -1.77 Total: -18.21 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.20 Total: -37.68 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.02 -9.25 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267078451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.540 kcal (2) G-P(sol) polarization free energy of solvation -29.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds