Wall clock time and date at job start Tue Mar 31 2020 05:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 5 5 C 1.46905 * 110.99870 * 84.99904 * 4 2 1 6 6 C 1.52993 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47393 * 180.02562 * 6 5 4 8 8 H 1.08010 * 119.99765 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00736 * 179.97438 * 7 6 5 10 10 N 1.31523 * 119.99548 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00627 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47202 * 90.00137 * 11 9 7 13 13 H 1.48501 * 109.47603 * 210.00337 * 11 9 7 14 14 H 1.48506 * 109.47086 * 329.99976 * 11 9 7 15 15 C 1.53001 * 109.47245 * 120.00015 * 2 1 3 16 16 H 1.09003 * 109.46654 * 60.00239 * 15 2 1 17 17 C 1.53002 * 109.47377 * 179.97438 * 15 2 1 18 18 C 1.50690 * 109.47404 * 300.00318 * 15 2 1 19 19 C 1.38245 * 119.98420 * 299.72502 * 18 15 2 20 20 C 1.38225 * 120.01162 * 179.72356 * 19 18 15 21 21 C 1.38344 * 119.98554 * 0.54983 * 20 19 18 22 22 Cl 1.73599 * 120.01376 * 179.74837 * 21 20 19 23 23 C 1.38354 * 119.97463 * 359.72338 * 21 20 19 24 24 C 1.38209 * 119.98802 * 0.02562 * 23 21 20 25 25 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 26 26 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 28 28 H 1.00901 * 111.00067 * 208.95080 * 4 2 1 29 29 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 30 30 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 31 31 H 1.09001 * 109.47393 * 299.99719 * 6 5 4 32 32 H 1.08998 * 109.47408 * 60.00073 * 6 5 4 33 33 H 0.97002 * 119.99722 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.46999 * 60.00003 * 17 15 2 35 35 H 1.08991 * 109.47460 * 180.02562 * 17 15 2 36 36 H 1.09002 * 109.46947 * 300.00395 * 17 15 2 37 37 H 1.08001 * 119.99413 * 0.02562 * 19 18 15 38 38 H 1.08001 * 120.00116 * 180.26818 * 20 19 18 39 39 H 1.08001 * 120.00399 * 179.97438 * 23 21 20 40 40 H 1.08004 * 119.99461 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5950 -0.5330 -3.5745 7 6 2.6600 0.4059 -4.7514 8 1 2.3648 1.4384 -4.6356 9 6 3.0963 -0.0529 -5.9762 10 7 3.4563 -1.3101 -6.1172 11 14 3.1762 1.1107 -7.4352 12 1 4.5123 1.7572 -7.4802 13 1 2.9530 0.3479 -8.6896 14 1 2.1267 2.1521 -7.2959 15 6 2.0400 -0.7212 1.2492 16 1 1.6766 -1.7489 1.2491 17 6 3.5700 -0.7218 1.2489 18 6 1.5376 -0.0110 2.4797 19 6 1.8764 1.3109 2.7011 20 6 1.4113 1.9646 3.8266 21 6 0.6159 1.2925 4.7374 22 17 0.0368 2.1110 6.1546 23 6 0.2819 -0.0321 4.5182 24 6 0.7433 -0.6832 3.3898 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.9173 -1.1204 -1.0288 29 1 1.0870 0.6164 -2.5525 30 1 2.7588 1.0463 -2.1182 31 1 3.5903 -0.9270 -3.3692 32 1 1.9183 -1.3563 -3.8030 33 1 3.7636 -1.6328 -6.9787 34 1 3.9337 0.3057 1.2487 35 1 3.9333 -1.2360 2.1386 36 1 3.9329 -1.2359 0.3589 37 1 2.5007 1.8343 1.9920 38 1 1.6725 2.9986 3.9972 39 1 -0.3386 -0.5574 5.2291 40 1 0.4822 -1.7171 3.2183 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280348342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:48 Heat of formation + Delta-G solvation = -6.518841 kcal Electronic energy + Delta-G solvation = -19206.959780 eV Core-core repulsion = 16239.311873 eV Total energy + Delta-G solvation = -2967.647907 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.03029 -37.58730 -36.52961 -34.10857 -32.55706 -31.31712 -30.31714 -29.42148 -27.88594 -24.34034 -23.93866 -23.12794 -21.80189 -20.50629 -19.58754 -17.39838 -16.39559 -15.95126 -15.71981 -15.21483 -14.61236 -14.41916 -14.03620 -13.77448 -13.55837 -13.41685 -13.30370 -12.80842 -12.39711 -12.27968 -11.95340 -11.84348 -11.69826 -11.44450 -11.25093 -11.10111 -10.99606 -10.96087 -10.82865 -10.53689 -10.44634 -9.93282 -9.35569 -9.27227 -9.14906 -8.72989 -8.35552 -7.81094 -6.00101 -4.02590 0.91938 1.06357 1.89412 3.31567 3.37887 3.39332 3.41346 4.35958 4.47055 4.52549 4.64474 4.80535 4.93397 5.07726 5.10842 5.20744 5.25884 5.35911 5.52907 5.56466 5.66907 5.72560 5.82560 5.90798 5.98038 6.01539 6.03251 6.18443 6.22959 6.33672 6.39891 6.42733 6.55677 6.58921 6.99753 7.49868 7.72828 7.83314 7.97458 8.08789 8.43600 9.04709 9.61215 11.11322 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038385 B = 0.002726 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.285835 B =10270.110149 C =10533.041310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.092 3.908 3 H 0.039 0.961 4 N -0.688 5.688 5 C 0.067 3.933 6 C 0.026 3.974 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.057 3.943 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.058 4.058 16 H 0.089 0.911 17 C -0.150 4.150 18 C -0.055 4.055 19 C -0.103 4.103 20 C -0.108 4.108 21 C -0.043 4.043 22 Cl -0.079 7.079 23 C -0.109 4.109 24 C -0.104 4.104 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.336 0.664 29 H 0.058 0.942 30 H 0.014 0.986 31 H 0.013 0.987 32 H 0.025 0.975 33 H 0.260 0.740 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.369 3.057 23.406 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.018 4.018 3 H 0.057 0.943 4 N -0.322 5.322 5 C -0.061 4.061 6 C -0.012 4.012 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.144 4.144 10 N -0.533 5.533 11 Si 0.720 3.280 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.077 4.077 16 H 0.107 0.893 17 C -0.208 4.208 18 C -0.056 4.056 19 C -0.121 4.121 20 C -0.126 4.126 21 C -0.070 4.070 22 Cl -0.050 7.050 23 C -0.128 4.128 24 C -0.123 4.123 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.156 0.844 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.973 2.758 23.220 23.907 hybrid contribution 0.775 1.259 -0.510 1.564 sum -4.199 4.017 22.710 23.442 Atomic orbital electron populations 1.21782 0.94848 1.02081 1.00845 1.21514 0.95906 0.95498 0.88923 0.94266 1.60707 1.33426 1.34177 1.03873 1.22186 0.99548 0.93470 0.90913 1.19061 0.96165 0.95806 0.90156 1.21178 1.43878 0.96326 0.94618 0.92805 1.25003 0.95441 0.95095 0.98843 1.69977 1.44467 1.14326 1.24492 0.86593 0.78343 0.80888 0.82160 1.20714 1.21186 1.19886 1.20408 0.95919 0.99958 0.91369 0.89306 1.21924 0.94154 1.02287 1.02404 1.19968 0.95915 0.94012 0.95676 1.21028 0.99853 0.94380 0.96840 1.21035 0.97472 1.00349 0.93794 1.20905 1.01565 0.93779 0.90714 1.98364 1.87878 1.79205 1.39583 1.21023 1.00561 0.92765 0.98401 1.21072 0.97510 1.00285 0.93391 0.92574 0.92204 0.93259 0.84353 0.92364 0.96771 0.96903 0.95658 0.93001 0.92500 0.92282 0.91347 0.85119 0.85114 0.85118 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.17 37.15 0.34 -1.53 16 2 C 0.09 1.26 2.05 -67.72 -0.14 1.12 16 3 H 0.04 0.56 7.06 -51.93 -0.37 0.19 16 4 N -0.69 -11.82 6.31 -106.73 -0.67 -12.50 16 5 C 0.07 1.39 5.42 -3.82 -0.02 1.37 16 6 C 0.03 0.66 5.23 -27.89 -0.15 0.52 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 11 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 C -0.06 -0.64 2.29 -91.78 -0.21 -0.85 16 16 H 0.09 0.98 7.88 -51.93 -0.41 0.57 16 17 C -0.15 -1.59 8.77 37.16 0.33 -1.26 16 18 C -0.06 -0.56 3.52 -104.62 -0.37 -0.93 16 19 C -0.10 -1.03 8.71 -39.58 -0.34 -1.38 16 20 C -0.11 -1.03 9.83 -39.55 -0.39 -1.42 16 21 C -0.04 -0.42 6.32 -39.50 -0.25 -0.67 16 22 Cl -0.08 -0.73 28.96 -51.86 -1.50 -2.23 16 23 C -0.11 -0.99 9.83 -39.55 -0.39 -1.38 16 24 C -0.10 -0.97 9.67 -39.59 -0.38 -1.35 16 25 H 0.06 0.83 7.45 -51.93 -0.39 0.45 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.60 7.22 -51.93 -0.37 0.22 16 28 H 0.34 5.53 6.16 -39.29 -0.24 5.28 16 29 H 0.06 1.23 7.44 -51.93 -0.39 0.85 16 30 H 0.01 0.29 8.05 -51.93 -0.42 -0.13 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.06 0.59 7.38 -51.93 -0.38 0.21 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.77 6.21 -51.93 -0.32 0.45 16 37 H 0.13 1.24 7.10 -52.49 -0.37 0.87 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.13 1.02 7.95 -52.48 -0.42 0.61 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -29.83 339.43 -9.88 -39.72 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.16 Total: 0.70 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -2.38 Total: -21.30 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.06 Total: -38.66 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.83 -9.88 -39.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280348342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.200 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds