Wall clock time and date at job start Tue Mar 31 2020 05:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46934 * 2 1 4 4 N 1.46898 * 109.46951 * 120.00082 * 2 1 3 5 5 C 1.46905 * 111.00138 * 274.99793 * 4 2 1 6 6 C 1.52996 * 109.47406 * 180.02562 * 5 4 2 7 7 C 1.50691 * 109.47298 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00328 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00239 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00041 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00398 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47323 * 59.99615 * 11 9 7 13 13 H 1.48495 * 109.47428 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46950 * 300.00088 * 11 9 7 15 15 C 1.52992 * 109.47231 * 239.99970 * 2 1 3 16 16 H 1.08993 * 109.47749 * 304.03927 * 15 2 1 17 17 C 1.53008 * 109.47146 * 64.04017 * 15 2 1 18 18 C 1.50701 * 109.47043 * 184.03378 * 15 2 1 19 19 C 1.38235 * 119.99097 * 303.91959 * 18 15 2 20 20 C 1.38220 * 120.01656 * 179.72501 * 19 18 15 21 21 C 1.38353 * 119.98407 * 0.54847 * 20 19 18 22 22 Cl 1.73598 * 120.01609 * 179.74888 * 21 20 19 23 23 C 1.38353 * 119.97342 * 359.72741 * 21 20 19 24 24 C 1.38219 * 119.98686 * 0.02562 * 23 21 20 25 25 H 1.09008 * 109.47141 * 174.31583 * 1 2 3 26 26 H 1.08997 * 109.47525 * 54.31806 * 1 2 3 27 27 H 1.09001 * 109.47404 * 294.31265 * 1 2 3 28 28 H 1.00897 * 111.00479 * 38.95416 * 4 2 1 29 29 H 1.08993 * 109.47240 * 300.00829 * 5 4 2 30 30 H 1.09001 * 109.46397 * 60.00428 * 5 4 2 31 31 H 1.09006 * 109.46909 * 300.00362 * 6 5 4 32 32 H 1.08999 * 109.46809 * 60.00019 * 6 5 4 33 33 H 0.97005 * 120.00491 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47139 * 179.97438 * 17 15 2 35 35 H 1.09003 * 109.46278 * 299.99653 * 17 15 2 36 36 H 1.08993 * 109.46871 * 59.99371 * 17 15 2 37 37 H 1.07998 * 119.99111 * 0.02562 * 19 18 15 38 38 H 1.07996 * 120.00594 * 180.27738 * 20 19 18 39 39 H 1.08001 * 120.01315 * 179.97438 * 23 21 20 40 40 H 1.08006 * 119.99446 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5962 -0.5329 3.5742 7 6 2.6600 0.4057 4.7514 8 1 2.3634 1.4377 4.6360 9 6 3.0971 -0.0531 5.9760 10 7 3.4578 -1.3099 6.1168 11 14 3.1755 1.1101 7.4355 12 1 1.8187 1.6446 7.7161 13 1 3.6743 0.3769 8.6266 14 1 4.0954 2.2336 7.1241 15 6 2.0400 -0.7212 -1.2492 16 1 1.6188 -1.7258 -1.2862 17 6 1.6146 0.0563 -2.4964 18 6 3.5437 -0.8083 -1.2002 19 6 4.2985 0.3420 -1.0668 20 6 5.6774 0.2622 -1.0161 21 6 6.3027 -0.9683 -1.1102 22 17 8.0349 -1.0689 -1.0532 23 6 5.5470 -2.1188 -1.2495 24 6 4.1679 -2.0382 -1.2949 25 1 -0.3634 -1.0227 -0.1018 26 1 -0.3634 0.5994 -0.8347 27 1 -0.3634 0.4231 0.9365 28 1 1.4495 -1.4979 1.4100 29 1 2.7587 1.0462 2.1183 30 1 1.0870 0.6162 2.5525 31 1 1.9201 -1.3567 3.8030 32 1 3.5916 -0.9262 3.3683 33 1 3.7649 -1.6328 6.9784 34 1 1.9784 -0.4572 -3.3864 35 1 0.5270 0.1193 -2.5318 36 1 2.0358 1.0609 -2.4594 37 1 3.8104 1.3029 -0.9973 38 1 6.2668 1.1607 -0.9074 39 1 6.0345 -3.0797 -1.3235 40 1 3.5778 -2.9363 -1.4032 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280348354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:55 Heat of formation + Delta-G solvation = -7.869470 kcal Electronic energy + Delta-G solvation = -19643.246884 eV Core-core repulsion = 16675.540409 eV Total energy + Delta-G solvation = -2967.706474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.62904 -37.39563 -36.20680 -34.15956 -32.58272 -30.91673 -30.47002 -28.95043 -27.44966 -24.81934 -23.50579 -22.84782 -21.63896 -20.61285 -19.53689 -17.08769 -16.33521 -15.62028 -15.38350 -14.63385 -14.51726 -14.36756 -14.24766 -13.81207 -13.35867 -13.25817 -12.78431 -12.63646 -12.48640 -12.20754 -12.02110 -11.73819 -11.56828 -11.35913 -11.06255 -10.98213 -10.91555 -10.77151 -10.70941 -10.53967 -10.38365 -9.97594 -9.33037 -9.12816 -8.84374 -8.32712 -8.31965 -7.73707 -5.97157 -3.99718 1.36346 1.48885 2.28125 3.34490 3.39008 3.41142 3.81475 4.43131 4.60012 4.67366 4.95380 5.02708 5.08451 5.31948 5.38735 5.39520 5.42324 5.47941 5.50248 5.59388 5.69633 5.88473 5.90313 5.92604 5.99210 6.08866 6.17599 6.25031 6.38893 6.40021 6.41647 6.51536 6.76868 6.98607 7.01754 7.53135 7.75780 7.86728 7.99890 8.12440 8.46435 9.07472 9.63855 11.14206 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.004877 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.238294 B = 5739.775636 C = 7461.019270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.089 3.911 3 H 0.074 0.926 4 N -0.681 5.681 5 C 0.069 3.931 6 C 0.027 3.973 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.059 3.941 10 N -0.893 5.893 11 Si 0.891 3.109 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C -0.045 4.045 16 H 0.077 0.923 17 C -0.145 4.145 18 C -0.032 4.032 19 C -0.097 4.097 20 C -0.107 4.107 21 C -0.042 4.042 22 Cl -0.085 7.085 23 C -0.108 4.108 24 C -0.102 4.102 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.335 0.665 29 H 0.055 0.945 30 H 0.014 0.986 31 H 0.012 0.988 32 H 0.024 0.976 33 H 0.261 0.739 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.468 0.577 -19.377 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.022 4.022 3 H 0.092 0.908 4 N -0.311 5.311 5 C -0.059 4.059 6 C -0.010 4.010 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.719 3.281 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.064 4.064 16 H 0.095 0.905 17 C -0.202 4.202 18 C -0.033 4.033 19 C -0.115 4.115 20 C -0.125 4.125 21 C -0.068 4.068 22 Cl -0.056 7.056 23 C -0.127 4.127 24 C -0.120 4.120 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.153 0.847 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.430 0.526 -19.387 19.399 hybrid contribution -0.678 0.662 1.313 1.619 sum -0.247 1.189 -18.074 18.115 Atomic orbital electron populations 1.22554 0.97664 1.01903 1.02053 1.21590 0.91992 0.97838 0.90783 0.90760 1.60652 1.56251 1.10050 1.04146 1.22134 0.97893 0.95207 0.90643 1.19033 0.96940 0.95186 0.89865 1.21132 1.43972 0.96338 0.94593 0.92937 1.24988 0.95399 0.95062 0.98817 1.69962 1.44367 1.14372 1.24510 0.86676 0.78345 0.80989 0.82073 1.20329 1.21266 1.20237 1.20246 0.91104 1.00374 0.94663 0.90469 1.21883 1.01282 1.00257 0.96803 1.19649 0.95117 0.92770 0.95719 1.20812 0.92566 0.98556 0.99610 1.20948 0.94908 0.96174 1.00501 1.20814 0.83862 0.95415 1.06743 1.98348 1.11503 1.98679 1.97063 1.20941 0.93882 0.97083 1.00761 1.20909 0.93392 0.97453 1.00229 0.92597 0.92435 0.92360 0.84740 0.92634 0.96823 0.96991 0.95732 0.92969 0.92572 0.92131 0.92488 0.85849 0.85511 0.85514 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 8.77 37.16 0.33 -1.79 16 2 C 0.09 1.16 1.88 -67.72 -0.13 1.03 16 3 H 0.07 1.02 6.99 -51.93 -0.36 0.66 16 4 N -0.68 -11.49 5.71 -106.73 -0.61 -12.10 16 5 C 0.07 1.43 5.42 -3.82 -0.02 1.41 16 6 C 0.03 0.71 5.23 -27.89 -0.15 0.57 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 11 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C -0.04 -0.50 2.32 -91.77 -0.21 -0.71 16 16 H 0.08 0.83 7.88 -51.93 -0.41 0.43 16 17 C -0.14 -1.30 8.78 37.16 0.33 -0.98 16 18 C -0.03 -0.41 4.27 -104.62 -0.45 -0.86 16 19 C -0.10 -1.28 8.76 -39.59 -0.35 -1.62 16 20 C -0.11 -1.44 9.83 -39.55 -0.39 -1.83 16 21 C -0.04 -0.58 6.32 -39.50 -0.25 -0.83 16 22 Cl -0.08 -1.10 28.96 -51.86 -1.50 -2.61 16 23 C -0.11 -1.41 9.83 -39.55 -0.39 -1.80 16 24 C -0.10 -1.29 9.67 -39.59 -0.38 -1.67 16 25 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 26 H 0.06 0.56 6.83 -51.93 -0.35 0.21 16 27 H 0.06 0.76 7.34 -51.93 -0.38 0.38 16 28 H 0.34 5.57 8.48 -39.29 -0.33 5.24 16 29 H 0.06 1.17 8.05 -51.93 -0.42 0.76 16 30 H 0.01 0.28 7.35 -51.93 -0.38 -0.10 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.49 6.66 -51.93 -0.35 0.14 16 36 H 0.06 0.51 7.63 -51.93 -0.40 0.11 16 37 H 0.12 1.47 7.15 -52.49 -0.38 1.09 16 38 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.13 1.35 7.95 -52.48 -0.42 0.94 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -30.43 341.52 -9.97 -40.40 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.25 Total: 1.48 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -2.47 Total: -22.70 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.13 Total: -38.60 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.61 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.43 -9.97 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280348354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.531 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds