Wall clock time and date at job start Tue Mar 31 2020 05:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46934 * 2 1 4 4 N 1.46898 * 109.46951 * 120.00082 * 2 1 3 5 5 C 1.46905 * 111.00138 * 274.99793 * 4 2 1 6 6 C 1.52996 * 109.47406 * 180.02562 * 5 4 2 7 7 C 1.50691 * 109.47298 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00328 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00239 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00041 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00398 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47323 * 59.99615 * 11 9 7 13 13 H 1.48495 * 109.47428 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46950 * 300.00088 * 11 9 7 15 15 C 1.52992 * 109.47231 * 239.99970 * 2 1 3 16 16 H 1.08993 * 109.47749 * 304.03927 * 15 2 1 17 17 C 1.53008 * 109.47146 * 64.04017 * 15 2 1 18 18 C 1.50701 * 109.47043 * 184.03378 * 15 2 1 19 19 C 1.38235 * 119.99097 * 303.91959 * 18 15 2 20 20 C 1.38220 * 120.01656 * 179.72501 * 19 18 15 21 21 C 1.38353 * 119.98407 * 0.54847 * 20 19 18 22 22 Cl 1.73598 * 120.01609 * 179.74888 * 21 20 19 23 23 C 1.38353 * 119.97342 * 359.72741 * 21 20 19 24 24 C 1.38219 * 119.98686 * 0.02562 * 23 21 20 25 25 H 1.09008 * 109.47141 * 174.31583 * 1 2 3 26 26 H 1.08997 * 109.47525 * 54.31806 * 1 2 3 27 27 H 1.09001 * 109.47404 * 294.31265 * 1 2 3 28 28 H 1.00897 * 111.00479 * 38.95416 * 4 2 1 29 29 H 1.08993 * 109.47240 * 300.00829 * 5 4 2 30 30 H 1.09001 * 109.46397 * 60.00428 * 5 4 2 31 31 H 1.09006 * 109.46909 * 300.00362 * 6 5 4 32 32 H 1.08999 * 109.46809 * 60.00019 * 6 5 4 33 33 H 0.97005 * 120.00491 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47139 * 179.97438 * 17 15 2 35 35 H 1.09003 * 109.46278 * 299.99653 * 17 15 2 36 36 H 1.08993 * 109.46871 * 59.99371 * 17 15 2 37 37 H 1.07998 * 119.99111 * 0.02562 * 19 18 15 38 38 H 1.07996 * 120.00594 * 180.27738 * 20 19 18 39 39 H 1.08001 * 120.01315 * 179.97438 * 23 21 20 40 40 H 1.08006 * 119.99446 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5962 -0.5329 3.5742 7 6 2.6600 0.4057 4.7514 8 1 2.3634 1.4377 4.6360 9 6 3.0971 -0.0531 5.9760 10 7 3.4578 -1.3099 6.1168 11 14 3.1755 1.1101 7.4355 12 1 1.8187 1.6446 7.7161 13 1 3.6743 0.3769 8.6266 14 1 4.0954 2.2336 7.1241 15 6 2.0400 -0.7212 -1.2492 16 1 1.6188 -1.7258 -1.2862 17 6 1.6146 0.0563 -2.4964 18 6 3.5437 -0.8083 -1.2002 19 6 4.2985 0.3420 -1.0668 20 6 5.6774 0.2622 -1.0161 21 6 6.3027 -0.9683 -1.1102 22 17 8.0349 -1.0689 -1.0532 23 6 5.5470 -2.1188 -1.2495 24 6 4.1679 -2.0382 -1.2949 25 1 -0.3634 -1.0227 -0.1018 26 1 -0.3634 0.5994 -0.8347 27 1 -0.3634 0.4231 0.9365 28 1 1.4495 -1.4979 1.4100 29 1 2.7587 1.0462 2.1183 30 1 1.0870 0.6162 2.5525 31 1 1.9201 -1.3567 3.8030 32 1 3.5916 -0.9262 3.3683 33 1 3.7649 -1.6328 6.9784 34 1 1.9784 -0.4572 -3.3864 35 1 0.5270 0.1193 -2.5318 36 1 2.0358 1.0609 -2.4594 37 1 3.8104 1.3029 -0.9973 38 1 6.2668 1.1607 -0.9074 39 1 6.0345 -3.0797 -1.3235 40 1 3.5778 -2.9363 -1.4032 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280348354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:54 Heat of formation + Delta-G solvation = -24.185930 kcal Electronic energy + Delta-G solvation = -19643.954418 eV Core-core repulsion = 16675.540409 eV Total energy + Delta-G solvation = -2968.414009 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.62409 -38.54261 -37.29482 -35.79186 -34.33477 -31.92971 -31.84755 -30.24808 -28.69591 -26.32135 -24.89462 -23.86469 -22.76430 -22.36120 -20.59407 -18.50258 -18.09031 -16.73067 -16.59566 -16.30037 -15.99763 -15.66653 -15.31942 -14.83322 -14.46666 -14.31073 -14.28050 -14.05399 -13.65848 -13.49618 -13.19769 -12.87933 -12.81848 -12.75289 -12.57302 -12.42316 -12.29787 -11.99592 -11.96551 -11.78335 -11.57688 -11.46388 -11.34375 -11.09077 -10.55454 -9.85291 -9.33420 -9.11547 -8.19623 -6.30992 0.34584 0.48065 1.24790 1.39293 1.42499 1.50355 2.40377 2.80765 3.13808 3.37402 3.74063 3.93809 4.05653 4.11352 4.33238 4.46838 4.50294 4.52384 4.55463 4.62120 4.68432 4.71212 4.81556 4.94419 5.03573 5.06676 5.11250 5.15146 5.16848 5.33051 5.37489 5.39972 5.45602 5.51853 5.71669 5.77621 5.82724 6.01081 6.18770 6.37517 6.65164 6.87004 7.38267 8.92233 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.004877 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.238294 B = 5739.775636 C = 7461.019270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.089 3.911 3 H 0.069 0.931 4 N -0.686 5.686 5 C 0.091 3.909 6 C 0.036 3.964 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.002 3.998 10 N -0.932 5.932 11 Si 0.964 3.036 12 H -0.265 1.265 13 H -0.283 1.283 14 H -0.268 1.268 15 C -0.038 4.038 16 H 0.085 0.915 17 C -0.139 4.139 18 C -0.040 4.040 19 C -0.107 4.107 20 C -0.120 4.120 21 C -0.059 4.059 22 Cl -0.084 7.084 23 C -0.118 4.118 24 C -0.110 4.110 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.336 0.664 29 H 0.050 0.950 30 H 0.017 0.983 31 H -0.011 1.011 32 H -0.012 1.012 33 H 0.263 0.737 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.585 1.502 -20.111 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.021 4.021 3 H 0.088 0.912 4 N -0.316 5.316 5 C -0.038 4.038 6 C -0.002 4.002 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.196 4.196 10 N -0.572 5.572 11 Si 0.788 3.212 12 H -0.190 1.190 13 H -0.208 1.208 14 H -0.193 1.193 15 C -0.057 4.057 16 H 0.103 0.897 17 C -0.197 4.197 18 C -0.040 4.040 19 C -0.126 4.126 20 C -0.139 4.139 21 C -0.085 4.085 22 Cl -0.056 7.056 23 C -0.136 4.136 24 C -0.128 4.128 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.154 0.846 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.008 0.992 32 H 0.007 0.993 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.698 1.460 -20.147 20.212 hybrid contribution -0.317 0.332 1.497 1.566 sum -1.015 1.792 -18.650 18.763 Atomic orbital electron populations 1.22477 0.96036 1.02869 1.02155 1.21676 0.93275 0.97434 0.89674 0.91229 1.60555 1.57341 1.09728 1.03973 1.21681 0.97440 0.94720 0.89929 1.18868 0.94554 0.94690 0.92082 1.21590 1.43960 0.97000 0.95699 0.92293 1.25952 0.94776 0.96775 1.02127 1.70103 1.45204 1.16452 1.25412 0.85524 0.78975 0.78715 0.77973 1.18995 1.20832 1.19292 1.20224 0.89910 1.00961 0.94563 0.89684 1.21854 1.02217 0.99960 0.95669 1.19915 0.96132 0.92683 0.95254 1.21017 0.92566 0.99296 0.99683 1.21159 0.95436 0.96531 1.00747 1.21007 0.84098 0.95917 1.07482 1.98339 1.11443 1.98690 1.97105 1.21192 0.94328 0.97501 1.00597 1.21203 0.93477 0.98255 0.99890 0.91699 0.90009 0.94073 0.84586 0.93114 0.96460 0.99244 0.99322 0.92816 0.91779 0.90671 0.92372 0.84884 0.84760 0.84302 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.65 8.77 71.98 0.63 -3.02 16 2 C 0.09 2.18 1.88 44.91 0.08 2.26 16 3 H 0.07 1.79 6.99 -2.39 -0.02 1.77 16 4 N -0.69 -22.78 5.71 -491.59 -2.80 -25.59 16 5 C 0.09 3.79 5.42 86.30 0.47 4.25 16 6 C 0.04 1.91 5.23 29.84 0.16 2.07 16 7 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.00 0.10 5.46 84.65 0.46 0.56 16 10 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 11 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 15 C -0.04 -0.76 2.32 -11.54 -0.03 -0.78 16 16 H 0.08 1.60 7.88 -2.39 -0.02 1.59 16 17 C -0.14 -2.09 8.78 71.98 0.63 -1.46 16 18 C -0.04 -0.96 4.27 -19.86 -0.08 -1.05 16 19 C -0.11 -2.74 8.76 22.26 0.20 -2.54 16 20 C -0.12 -3.22 9.83 22.29 0.22 -3.00 16 21 C -0.06 -1.61 6.32 22.32 0.14 -1.47 16 22 Cl -0.08 -2.20 28.96 -2.72 -0.08 -2.28 16 23 C -0.12 -3.02 9.83 22.29 0.22 -2.80 16 24 C -0.11 -2.68 9.67 22.27 0.22 -2.46 16 25 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.08 1.31 6.83 -2.39 -0.02 1.29 16 27 H 0.04 1.00 7.34 -2.39 -0.02 0.98 16 28 H 0.34 11.04 8.48 -89.70 -0.76 10.28 16 29 H 0.05 2.14 8.05 -2.39 -0.02 2.12 16 30 H 0.02 0.70 7.35 -2.39 -0.02 0.68 16 31 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 32 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 33 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.92 6.66 -2.39 -0.02 0.91 16 36 H 0.06 0.87 7.63 -2.39 -0.02 0.85 16 37 H 0.13 3.02 7.15 -2.91 -0.02 3.00 16 38 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 39 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 40 H 0.14 2.85 7.95 -2.91 -0.02 2.83 16 Total: -1.00 -65.78 341.52 3.23 -62.55 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.26 Total: 16.65 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 3.55 Total: -40.65 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -2.52 Total: -83.09 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 17 Polarization: -2.20 SS G_CDS: -0.08 Total: -2.28 kcal Total: -65.78 3.23 -62.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280348354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.364 kcal (2) G-P(sol) polarization free energy of solvation -65.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds