Wall clock time and date at job start Tue Mar 31 2020 05:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47154 * 2 1 4 4 C 1.53001 * 109.47430 * 240.00229 * 2 1 3 5 5 C 1.50693 * 109.47605 * 174.99751 * 4 2 1 6 6 C 1.38263 * 119.99161 * 89.99509 * 5 4 2 7 7 C 1.38227 * 120.02488 * 179.72424 * 6 5 4 8 8 C 1.38234 * 120.01430 * 0.28273 * 7 6 5 9 9 C 1.38334 * 119.98337 * 359.97438 * 8 7 6 10 10 Cl 1.73599 * 120.00894 * 179.97438 * 9 8 7 11 11 C 1.38190 * 119.99673 * 270.27943 * 5 4 2 12 12 N 1.46904 * 109.47089 * 119.99990 * 2 1 3 13 13 C 1.46900 * 111.00230 * 274.99940 * 12 2 1 14 14 C 1.52990 * 109.46975 * 180.02562 * 13 12 2 15 15 C 1.53005 * 109.47153 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47391 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00201 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00225 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00008 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00393 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46626 * 60.00073 * 20 18 16 22 22 H 1.48493 * 109.47048 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47065 * 300.00734 * 20 18 16 24 24 H 1.09000 * 109.47154 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47032 * 299.99814 * 1 2 3 26 26 H 1.09000 * 109.47421 * 59.99708 * 1 2 3 27 27 H 1.08998 * 109.46818 * 54.99768 * 4 2 1 28 28 H 1.09001 * 109.47102 * 295.00217 * 4 2 1 29 29 H 1.08002 * 119.98986 * 0.02562 * 6 5 4 30 30 H 1.08002 * 119.98919 * 180.30242 * 7 6 5 31 31 H 1.07993 * 120.00600 * 179.97438 * 8 7 6 32 32 H 1.08002 * 120.00565 * 359.97438 * 11 5 4 33 33 H 1.00895 * 110.99884 * 38.95992 * 12 2 1 34 34 H 1.09005 * 109.46879 * 300.00185 * 13 12 2 35 35 H 1.09003 * 109.46801 * 59.99855 * 13 12 2 36 36 H 1.09003 * 109.47766 * 300.00065 * 14 13 12 37 37 H 1.09003 * 109.47594 * 60.00194 * 14 13 12 38 38 H 1.08994 * 109.46916 * 300.00481 * 15 14 13 39 39 H 1.09003 * 109.46741 * 59.99636 * 15 14 13 40 40 H 0.96993 * 120.00229 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5418 -0.6148 -1.3128 6 6 4.3291 -1.5817 -0.7153 7 6 5.7067 -1.4879 -0.7780 8 6 6.2982 -0.4241 -1.4333 9 6 5.5110 0.5464 -2.0267 10 17 6.2531 1.8830 -2.8492 11 6 4.1320 0.4521 -1.9632 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2225 2.3469 14 6 2.5962 -0.5330 3.5741 15 6 2.6610 0.4199 4.7695 16 6 3.1664 -0.3243 5.9784 17 1 3.4169 -1.3721 5.9018 18 6 3.3102 0.3325 7.1820 19 7 3.0058 1.6086 7.2753 20 14 3.9361 -0.5902 8.6808 21 1 5.2921 -1.1271 8.4009 22 1 3.9991 0.3347 9.8408 23 1 3.0142 -1.7120 8.9921 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.6054 -0.2617 -2.1369 28 1 1.7516 -1.7715 -1.2057 29 1 3.8675 -2.4132 -0.2035 30 1 6.3211 -2.2461 -0.3153 31 1 7.3745 -0.3506 -1.4819 32 1 3.5169 1.2096 -2.4263 33 1 1.4496 -1.4979 1.4100 34 1 2.7588 1.0462 2.1182 35 1 1.0870 0.6163 2.5525 36 1 1.9202 -1.3568 3.8030 37 1 3.5917 -0.9264 3.3682 38 1 3.3367 1.2440 4.5409 39 1 1.6653 0.8129 4.9752 40 1 3.1066 2.0707 8.1221 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282595660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:46 Heat of formation + Delta-G solvation = -13.519048 kcal Electronic energy + Delta-G solvation = -19110.310789 eV Core-core repulsion = 16142.359330 eV Total energy + Delta-G solvation = -2967.951458 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.54166 -37.40555 -36.43473 -34.26801 -32.65923 -31.31343 -30.67680 -29.31752 -26.64056 -25.78406 -22.70822 -22.60037 -21.71323 -20.77828 -19.84859 -17.03160 -16.32150 -15.74861 -15.58287 -15.08680 -14.74293 -14.41388 -14.32463 -13.90887 -13.69765 -13.27587 -13.10830 -12.55933 -12.25787 -12.20121 -12.08175 -11.64039 -11.46669 -11.40845 -11.28462 -11.17887 -10.89838 -10.83228 -10.74408 -10.55373 -10.48794 -9.67491 -9.31110 -9.05258 -8.89330 -8.59623 -8.31944 -8.10650 -5.97215 -3.99387 1.21638 1.27448 2.08728 3.34933 3.39122 3.41715 3.64492 4.34293 4.49697 4.63150 4.79822 4.95267 5.04872 5.21674 5.23295 5.31070 5.37999 5.38431 5.47136 5.65773 5.68993 5.74294 5.85420 5.89472 5.92235 6.04715 6.12474 6.20220 6.36093 6.37871 6.58409 6.75184 6.80713 6.83835 7.16482 7.37253 7.66406 7.71071 7.86639 8.03273 8.46443 9.07679 9.64428 11.14220 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015843 B = 0.003482 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.895468 B = 8039.863237 C = 8905.407470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.085 3.915 3 H 0.077 0.923 4 C -0.069 4.069 5 C -0.051 4.051 6 C -0.082 4.082 7 C -0.108 4.108 8 C -0.119 4.119 9 C -0.036 4.036 10 Cl -0.082 7.082 11 C -0.115 4.115 12 N -0.682 5.682 13 C 0.061 3.939 14 C -0.105 4.105 15 C 0.023 3.977 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.336 0.664 34 H 0.064 0.936 35 H 0.023 0.977 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 -4.367 -21.839 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.025 4.025 3 H 0.095 0.905 4 C -0.107 4.107 5 C -0.052 4.052 6 C -0.100 4.100 7 C -0.127 4.127 8 C -0.138 4.138 9 C -0.062 4.062 10 Cl -0.054 7.054 11 C -0.134 4.134 12 N -0.312 5.312 13 C -0.067 4.067 14 C -0.143 4.143 15 C -0.015 4.015 16 C -0.557 4.557 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.154 0.846 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.934 -4.005 -21.946 22.328 hybrid contribution -0.504 -0.063 1.156 1.262 sum 0.430 -4.068 -20.791 21.189 Atomic orbital electron populations 1.22506 0.97226 1.02085 1.02284 1.21535 0.92145 0.98189 0.90637 0.90483 1.20665 0.90728 1.01772 0.97557 1.19654 0.95816 0.93721 0.95979 1.21120 0.93074 0.99033 0.96762 1.21132 0.95242 0.97742 0.98548 1.20989 0.99910 0.94080 0.98781 1.20833 0.93180 0.91426 1.00798 1.98355 1.82870 1.46363 1.77778 1.20878 0.92474 0.98903 1.01128 1.60649 1.56532 1.09985 1.04031 1.22114 0.98922 0.95413 0.90255 1.21600 0.99965 0.98855 0.93915 1.19052 0.96937 0.94344 0.91174 1.21217 1.43584 0.96358 0.94568 0.92768 1.25028 0.95642 0.94874 0.98946 1.69957 1.48885 1.09002 1.25775 0.86665 0.79466 0.79590 0.82321 1.20219 1.21314 1.20284 0.92440 0.92277 0.92332 0.90938 0.90656 0.85214 0.85328 0.85474 0.85565 0.84608 0.91719 0.95844 0.93781 0.92662 0.96665 0.96909 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.16 37.15 0.34 -1.44 16 2 C 0.09 0.95 2.58 -67.71 -0.17 0.77 16 3 H 0.08 0.96 7.80 -51.93 -0.40 0.55 16 4 C -0.07 -0.65 5.03 -27.89 -0.14 -0.79 16 5 C -0.05 -0.57 4.95 -104.63 -0.52 -1.09 16 6 C -0.08 -0.93 9.31 -39.58 -0.37 -1.30 16 7 C -0.11 -1.20 10.05 -39.59 -0.40 -1.60 16 8 C -0.12 -1.35 9.83 -39.55 -0.39 -1.74 16 9 C -0.04 -0.42 6.32 -39.50 -0.25 -0.67 16 10 Cl -0.08 -0.92 28.96 -51.86 -1.50 -2.42 16 11 C -0.12 -1.31 9.49 -39.55 -0.38 -1.68 16 12 N -0.68 -9.09 5.63 -106.73 -0.60 -9.69 16 13 C 0.06 1.04 5.48 -3.83 -0.02 1.02 16 14 C -0.11 -2.17 5.41 -26.73 -0.14 -2.31 16 15 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 17 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 20 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 25 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 28 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.34 4.18 8.47 -39.29 -0.33 3.85 16 34 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 35 H 0.02 0.40 7.44 -51.93 -0.39 0.01 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -30.32 348.39 -10.66 -40.98 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.54 Total: -0.33 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -2.99 Total: -24.07 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.14 Total: -36.28 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.32 -10.66 -40.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282595660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.464 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds