Wall clock time and date at job start Tue Mar 31 2020 05:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.53004 * 109.47250 * 120.00329 * 2 1 3 5 5 C 1.50695 * 109.46970 * 185.00106 * 4 2 1 6 6 H 1.07994 * 120.00531 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99941 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99750 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47296 * 89.99526 * 9 7 5 11 11 H 1.48502 * 109.47256 * 209.99504 * 9 7 5 12 12 H 1.48499 * 109.47077 * 329.99852 * 9 7 5 13 13 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 14 14 C 1.46901 * 111.00443 * 306.04832 * 13 2 1 15 15 C 1.46906 * 110.99820 * 70.00145 * 13 2 1 16 16 C 1.52996 * 109.47022 * 169.99926 * 15 13 2 17 17 C 1.50708 * 109.46924 * 180.02562 * 16 15 13 18 18 C 1.38240 * 119.98664 * 269.72410 * 17 16 15 19 19 C 1.38214 * 120.01441 * 179.72479 * 18 17 16 20 20 C 1.38357 * 119.98288 * 0.55132 * 19 18 17 21 21 Cl 1.73597 * 120.01070 * 179.70467 * 20 19 18 22 22 C 1.38355 * 119.97402 * 359.72409 * 20 19 18 23 23 C 1.38211 * 119.98429 * 0.02562 * 22 20 19 24 24 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 25 25 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 26 26 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46734 * 304.99818 * 4 2 1 28 28 H 1.08992 * 109.47535 * 64.99500 * 4 2 1 29 29 H 0.97004 * 120.00114 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47401 * 183.95136 * 14 13 2 31 31 H 1.09001 * 109.46874 * 63.95149 * 14 13 2 32 32 H 1.09004 * 109.46970 * 303.95282 * 14 13 2 33 33 H 1.08997 * 109.46995 * 289.99871 * 15 13 2 34 34 H 1.09001 * 109.46848 * 49.99877 * 15 13 2 35 35 H 1.08997 * 109.47190 * 299.99825 * 16 15 13 36 36 H 1.09001 * 109.47349 * 60.00258 * 16 15 13 37 37 H 1.08006 * 119.99136 * 0.02562 * 18 17 16 38 38 H 1.07998 * 120.00787 * 180.27576 * 19 18 17 39 39 H 1.07995 * 120.00335 * 179.97438 * 22 20 19 40 40 H 1.08001 * 119.98837 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2305 -1.1936 2.3577 8 7 3.5765 -1.8380 3.2993 9 14 6.0922 -1.0624 2.4360 10 1 6.4711 0.1598 3.1896 11 1 6.6443 -2.2580 3.1222 12 1 6.6413 -0.9845 1.0584 13 7 2.0196 -0.6926 -1.1994 14 6 1.4343 -2.0355 -1.3078 15 6 1.7529 0.0972 -2.4090 16 6 2.4884 -0.5257 -3.5972 17 6 2.2152 0.2848 -4.8381 18 6 1.1371 -0.0286 -5.6446 19 6 0.8827 0.7179 -6.7797 20 6 1.7140 1.7720 -7.1147 21 17 1.3996 2.7053 -8.5443 22 6 2.7961 2.0816 -6.3101 23 6 3.0464 1.3375 -5.1726 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 -0.2618 2.1370 28 1 1.7517 -1.7715 1.2056 29 1 4.0609 -2.2448 4.0348 30 1 1.8663 -2.5522 -2.1648 31 1 0.3555 -1.9520 -1.4399 32 1 1.6466 -2.5988 -0.3991 33 1 0.6814 0.1052 -2.6087 34 1 2.1025 1.1188 -2.2603 35 1 3.5599 -0.5338 -3.3976 36 1 2.1387 -1.5474 -3.7460 37 1 0.4906 -0.8540 -5.3851 38 1 0.0378 0.4758 -7.4073 39 1 3.4455 2.9040 -6.5714 40 1 3.8913 1.5789 -4.5447 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299447286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:55 Heat of formation + Delta-G solvation = 7.763583 kcal Electronic energy + Delta-G solvation = -19361.812370 eV Core-core repulsion = 16394.783796 eV Total energy + Delta-G solvation = -2967.028574 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.65184 -37.94309 -36.69166 -33.79995 -32.46915 -31.24252 -30.49979 -27.93618 -27.32976 -25.67797 -23.42470 -23.00717 -22.15734 -20.60998 -18.74342 -17.27100 -16.18118 -15.89925 -15.82735 -15.00131 -14.57119 -14.40600 -14.07467 -13.69224 -13.60516 -13.53141 -13.05677 -12.45638 -12.33634 -11.98696 -11.76316 -11.71603 -11.57768 -11.36672 -11.25431 -11.05211 -11.00483 -10.70847 -10.63043 -10.50475 -10.30834 -9.96053 -9.22480 -9.19793 -8.97609 -8.66641 -8.25612 -7.48734 -5.88506 -3.86234 0.96858 1.11201 1.93001 3.39000 3.44403 3.45308 3.50038 4.44748 4.56735 4.58496 4.69371 4.98138 5.10090 5.17402 5.33950 5.45794 5.48589 5.52284 5.72492 5.75226 5.81922 5.87939 5.92322 6.00349 6.03577 6.04830 6.09119 6.19773 6.27709 6.46823 6.52555 6.62001 6.65248 6.73657 6.98914 7.53035 7.67794 7.90697 8.02055 8.12898 8.58709 9.19710 9.75400 11.23548 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026000 B = 0.003204 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.648843 B = 8736.546515 C = 9362.393508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.068 0.932 4 C 0.029 3.971 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.515 5.515 14 C 0.023 3.977 15 C 0.061 3.939 16 C -0.082 4.082 17 C -0.065 4.065 18 C -0.107 4.107 19 C -0.110 4.110 20 C -0.044 4.044 21 Cl -0.080 7.080 22 C -0.109 4.109 23 C -0.103 4.103 24 H 0.055 0.945 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.018 0.982 28 H 0.020 0.980 29 H 0.257 0.743 30 H 0.055 0.945 31 H 0.016 0.984 32 H 0.080 0.920 33 H 0.026 0.974 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 5.129 -20.117 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.086 0.914 4 C -0.008 4.008 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.237 5.237 14 C -0.125 4.125 15 C -0.067 4.067 16 C -0.120 4.120 17 C -0.065 4.065 18 C -0.125 4.125 19 C -0.129 4.129 20 C -0.071 4.071 21 Cl -0.051 7.051 22 C -0.127 4.127 23 C -0.121 4.121 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.099 0.901 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.180 5.061 -20.033 21.301 hybrid contribution 0.068 0.214 -0.112 0.251 sum -5.112 5.275 -20.144 21.442 Atomic orbital electron populations 1.22522 0.99802 1.01347 1.00608 1.21928 0.90023 0.98291 0.91869 0.91367 1.19205 0.96367 0.95408 0.89783 1.21171 0.91805 1.32892 1.06934 0.92160 1.25013 0.98026 0.95890 0.96025 1.69964 1.35234 1.36988 1.12371 0.86636 0.86391 0.77203 0.77992 1.21027 1.21586 1.19889 1.62107 1.58432 1.02157 1.01035 1.22430 0.95636 0.91710 1.02738 1.22041 0.96846 0.97721 0.90109 1.20708 1.02715 0.98094 0.90459 1.20156 0.94323 0.95727 0.96318 1.21063 0.97508 0.99861 0.94054 1.21021 0.99336 0.94639 0.97864 1.20905 0.98715 0.96466 0.90972 1.98360 1.95461 1.72756 1.38555 1.21057 0.96544 1.00477 0.94655 1.21134 0.99932 0.94847 0.96217 0.92576 0.94277 0.92772 0.96400 0.96206 0.93332 0.92636 0.96610 0.90141 0.95626 0.91261 0.89626 0.90739 0.85194 0.85199 0.85083 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 8.44 37.16 0.31 -2.81 16 2 C 0.09 1.73 2.26 -67.71 -0.15 1.58 16 3 H 0.07 1.39 7.93 -51.93 -0.41 0.98 16 4 C 0.03 0.74 4.37 -27.88 -0.12 0.61 16 5 C -0.49 -13.57 8.84 -34.44 -0.30 -13.87 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.51 -9.37 4.43 -234.88 -1.04 -10.41 16 14 C 0.02 0.39 8.44 60.07 0.51 0.89 16 15 C 0.06 0.90 4.51 -3.82 -0.02 0.88 16 16 C -0.08 -1.03 5.27 -27.88 -0.15 -1.17 16 17 C -0.06 -0.72 5.13 -104.62 -0.54 -1.26 16 18 C -0.11 -1.09 9.70 -39.59 -0.38 -1.47 16 19 C -0.11 -1.08 9.83 -39.55 -0.39 -1.47 16 20 C -0.04 -0.45 6.32 -39.49 -0.25 -0.70 16 21 Cl -0.08 -0.77 28.96 -51.86 -1.50 -2.27 16 22 C -0.11 -1.10 9.83 -39.55 -0.39 -1.49 16 23 C -0.10 -1.10 9.70 -39.59 -0.38 -1.48 16 24 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 25 H 0.04 0.59 6.91 -51.93 -0.36 0.23 16 26 H 0.05 0.91 6.42 -51.93 -0.33 0.58 16 27 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.02 0.52 6.26 -51.93 -0.33 0.20 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.05 0.82 6.47 -51.93 -0.34 0.49 16 31 H 0.02 0.24 6.46 -51.93 -0.34 -0.09 16 32 H 0.08 1.57 6.21 -51.93 -0.32 1.25 16 33 H 0.03 0.36 7.06 -51.93 -0.37 0.00 16 34 H 0.07 1.04 7.93 -51.93 -0.41 0.62 16 35 H 0.09 1.14 8.08 -51.93 -0.42 0.72 16 36 H 0.07 0.89 6.49 -51.93 -0.34 0.55 16 37 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 38 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 336.42 15.07 5.07 5.07 Total: -1.00 -29.62 336.42 -10.14 -39.76 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.04 Total: -2.16 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -2.35 Total: -20.44 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.30 Total: -36.82 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.62 -10.14 -39.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299447286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.526 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds