Wall clock time and date at job start Tue Mar 31 2020 05:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.53004 * 109.47250 * 120.00329 * 2 1 3 5 5 C 1.50695 * 109.46970 * 185.00106 * 4 2 1 6 6 H 1.07994 * 120.00531 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99941 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99750 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47296 * 89.99526 * 9 7 5 11 11 H 1.48502 * 109.47256 * 209.99504 * 9 7 5 12 12 H 1.48499 * 109.47077 * 329.99852 * 9 7 5 13 13 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 14 14 C 1.46901 * 111.00443 * 306.04832 * 13 2 1 15 15 C 1.46906 * 110.99820 * 70.00145 * 13 2 1 16 16 C 1.52996 * 109.47022 * 169.99926 * 15 13 2 17 17 C 1.50708 * 109.46924 * 180.02562 * 16 15 13 18 18 C 1.38240 * 119.98664 * 269.72410 * 17 16 15 19 19 C 1.38214 * 120.01441 * 179.72479 * 18 17 16 20 20 C 1.38357 * 119.98288 * 0.55132 * 19 18 17 21 21 Cl 1.73597 * 120.01070 * 179.70467 * 20 19 18 22 22 C 1.38355 * 119.97402 * 359.72409 * 20 19 18 23 23 C 1.38211 * 119.98429 * 0.02562 * 22 20 19 24 24 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 25 25 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 26 26 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46734 * 304.99818 * 4 2 1 28 28 H 1.08992 * 109.47535 * 64.99500 * 4 2 1 29 29 H 0.97004 * 120.00114 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47401 * 183.95136 * 14 13 2 31 31 H 1.09001 * 109.46874 * 63.95149 * 14 13 2 32 32 H 1.09004 * 109.46970 * 303.95282 * 14 13 2 33 33 H 1.08997 * 109.46995 * 289.99871 * 15 13 2 34 34 H 1.09001 * 109.46848 * 49.99877 * 15 13 2 35 35 H 1.08997 * 109.47190 * 299.99825 * 16 15 13 36 36 H 1.09001 * 109.47349 * 60.00258 * 16 15 13 37 37 H 1.08006 * 119.99136 * 0.02562 * 18 17 16 38 38 H 1.07998 * 120.00787 * 180.27576 * 19 18 17 39 39 H 1.07995 * 120.00335 * 179.97438 * 22 20 19 40 40 H 1.08001 * 119.98837 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2305 -1.1936 2.3577 8 7 3.5765 -1.8380 3.2993 9 14 6.0922 -1.0624 2.4360 10 1 6.4711 0.1598 3.1896 11 1 6.6443 -2.2580 3.1222 12 1 6.6413 -0.9845 1.0584 13 7 2.0196 -0.6926 -1.1994 14 6 1.4343 -2.0355 -1.3078 15 6 1.7529 0.0972 -2.4090 16 6 2.4884 -0.5257 -3.5972 17 6 2.2152 0.2848 -4.8381 18 6 1.1371 -0.0286 -5.6446 19 6 0.8827 0.7179 -6.7797 20 6 1.7140 1.7720 -7.1147 21 17 1.3996 2.7053 -8.5443 22 6 2.7961 2.0816 -6.3101 23 6 3.0464 1.3375 -5.1726 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 -0.2618 2.1370 28 1 1.7517 -1.7715 1.2056 29 1 4.0609 -2.2448 4.0348 30 1 1.8663 -2.5522 -2.1648 31 1 0.3555 -1.9520 -1.4399 32 1 1.6466 -2.5988 -0.3991 33 1 0.6814 0.1052 -2.6087 34 1 2.1025 1.1188 -2.2603 35 1 3.5599 -0.5338 -3.3976 36 1 2.1387 -1.5474 -3.7460 37 1 0.4906 -0.8540 -5.3851 38 1 0.0378 0.4758 -7.4073 39 1 3.4455 2.9040 -6.5714 40 1 3.8913 1.5789 -4.5447 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299447286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:54 Heat of formation + Delta-G solvation = -7.409372 kcal Electronic energy + Delta-G solvation = -19362.470319 eV Core-core repulsion = 16394.783796 eV Total energy + Delta-G solvation = -2967.686523 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49139 -39.31216 -37.47428 -35.31358 -34.13805 -31.99880 -31.91952 -29.20033 -29.04420 -26.92864 -25.22104 -23.76860 -23.43670 -21.63977 -20.30366 -18.33911 -18.06350 -17.12013 -16.70882 -16.52384 -15.94451 -15.60928 -15.45675 -14.72080 -14.45506 -14.42862 -14.33497 -14.02178 -13.83309 -13.45469 -13.09623 -13.05506 -12.86664 -12.61390 -12.49799 -12.37176 -12.30908 -12.13720 -12.05735 -11.79803 -11.72330 -11.53198 -11.06912 -10.98324 -10.45723 -9.98159 -9.49876 -8.87370 -8.07892 -6.12491 0.16895 0.35473 1.17149 1.43715 1.44419 1.55913 2.49446 2.64575 3.16579 3.30383 3.82583 3.96747 4.01327 4.14253 4.24092 4.30790 4.41685 4.46598 4.50948 4.58193 4.60455 4.68887 4.75843 4.83968 4.96588 4.99646 5.08029 5.18607 5.22487 5.24755 5.27930 5.29319 5.36517 5.52037 5.67612 5.73522 5.87281 5.92668 6.34847 6.48677 6.55734 7.01807 7.53337 9.04236 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026000 B = 0.003204 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.648843 B = 8736.546515 C = 9362.393508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.061 0.939 4 C 0.035 3.965 5 C -0.498 4.498 6 H 0.059 0.941 7 C -0.007 4.007 8 N -0.942 5.942 9 Si 0.956 3.044 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.536 5.536 14 C 0.029 3.971 15 C 0.067 3.933 16 C -0.072 4.072 17 C -0.075 4.075 18 C -0.107 4.107 19 C -0.112 4.112 20 C -0.052 4.052 21 Cl -0.076 7.076 22 C -0.114 4.114 23 C -0.111 4.111 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.053 0.947 27 H -0.011 1.011 28 H -0.001 1.001 29 H 0.258 0.742 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.731 5.621 -22.103 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 H 0.080 0.920 4 C -0.003 4.003 5 C -0.536 4.536 6 H 0.077 0.923 7 C -0.202 4.202 8 N -0.584 5.584 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.190 1.190 13 N -0.260 5.260 14 C -0.119 4.119 15 C -0.061 4.061 16 C -0.109 4.109 17 C -0.076 4.076 18 C -0.125 4.125 19 C -0.131 4.131 20 C -0.079 4.079 21 Cl -0.047 7.047 22 C -0.132 4.132 23 C -0.129 4.129 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.008 0.992 28 H 0.017 0.983 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.212 5.564 -22.039 23.321 hybrid contribution 0.049 0.081 0.457 0.467 sum -5.163 5.645 -21.582 22.898 Atomic orbital electron populations 1.22383 0.97322 1.01731 1.01807 1.21606 0.91966 0.97074 0.90696 0.92038 1.19069 0.95226 0.94506 0.91452 1.21501 0.93274 1.32217 1.06615 0.92317 1.25863 1.02879 0.95696 0.95790 1.70096 1.37097 1.38126 1.13095 0.85578 0.80642 0.77277 0.78308 1.20270 1.21379 1.18972 1.61984 1.59313 1.02966 1.01700 1.22354 0.96897 0.90859 1.01832 1.22036 0.97843 0.97039 0.89147 1.20553 1.01645 0.98567 0.90163 1.20071 0.95227 0.96076 0.96184 1.21246 0.97256 1.00203 0.93842 1.21248 0.99688 0.94240 0.97910 1.21084 0.98887 0.96720 0.91175 1.98362 1.95425 1.72660 1.38263 1.21224 0.96786 1.00771 0.94428 1.21252 1.00151 0.94919 0.96579 0.92694 0.91721 0.92761 0.99245 0.98297 0.93327 0.90459 0.94833 0.93667 0.94423 0.91774 0.90806 0.90008 0.83647 0.83500 0.83836 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.69 8.44 71.98 0.61 -5.08 16 2 C 0.09 3.78 2.26 44.92 0.10 3.88 16 3 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 4 C 0.03 1.79 4.37 29.85 0.13 1.92 16 5 C -0.50 -28.05 8.84 25.60 0.23 -27.82 16 6 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 7 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 8 N -0.94 -57.78 13.29 21.45 0.28 -57.50 16 9 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 N -0.54 -19.09 4.43 -897.03 -3.97 -23.06 16 14 C 0.03 0.93 8.44 127.69 1.08 2.01 16 15 C 0.07 1.84 4.51 86.30 0.39 2.23 16 16 C -0.07 -1.65 5.27 29.85 0.16 -1.50 16 17 C -0.07 -1.52 5.13 -19.86 -0.10 -1.62 16 18 C -0.11 -1.91 9.70 22.26 0.22 -1.70 16 19 C -0.11 -1.93 9.83 22.29 0.22 -1.71 16 20 C -0.05 -0.97 6.32 22.33 0.14 -0.83 16 21 Cl -0.08 -1.32 28.96 -2.72 -0.08 -1.40 16 22 C -0.11 -2.09 9.83 22.29 0.22 -1.87 16 23 C -0.11 -2.19 9.70 22.26 0.22 -1.97 16 24 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 25 H 0.06 1.79 6.91 -2.39 -0.02 1.77 16 26 H 0.05 1.76 6.42 -2.39 -0.02 1.75 16 27 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 28 H 0.00 -0.07 6.26 -2.39 -0.01 -0.08 16 29 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.08 2.16 6.47 -2.39 -0.02 2.14 16 31 H 0.03 0.97 6.46 -2.39 -0.02 0.95 16 32 H 0.04 1.79 6.21 -2.38 -0.01 1.78 16 33 H 0.04 0.95 7.06 -2.39 -0.02 0.94 16 34 H 0.06 1.82 7.93 -2.39 -0.02 1.80 16 35 H 0.07 1.88 8.08 -2.39 -0.02 1.86 16 36 H 0.08 1.75 6.49 -2.39 -0.02 1.74 16 37 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 40 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -63.69 336.42 3.34 -60.35 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 1.01 Total: 8.34 kcal Atomic # 6 Polarization: -38.03 SS G_CDS: 4.06 Total: -33.97 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -3.69 Total: -80.56 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -63.69 3.34 -60.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299447286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.945 kcal (2) G-P(sol) polarization free energy of solvation -63.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds