Wall clock time and date at job start Tue Mar 31 2020 05:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46757 * 2 1 4 4 H 1.09000 * 109.47274 * 305.74522 * 3 2 1 5 5 N 1.46894 * 109.47392 * 65.74967 * 3 2 1 6 6 C 1.46897 * 111.00342 * 209.06274 * 5 3 2 7 7 H 1.08998 * 109.47069 * 31.99496 * 6 5 3 8 8 C 1.52995 * 109.47296 * 271.99468 * 6 5 3 9 9 C 1.53006 * 109.47343 * 151.99143 * 6 5 3 10 10 C 1.50693 * 109.47108 * 295.00107 * 9 6 5 11 11 H 1.08005 * 120.00131 * 359.97438 * 10 9 6 12 12 C 1.37877 * 119.99863 * 179.72323 * 10 9 6 13 13 N 1.31510 * 119.99840 * 0.27831 * 12 10 9 14 14 Si 1.86805 * 120.00071 * 180.27649 * 12 10 9 15 15 H 1.48501 * 109.47239 * 89.99858 * 14 12 10 16 16 H 1.48501 * 109.46950 * 210.00103 * 14 12 10 17 17 H 1.48500 * 109.46842 * 330.00007 * 14 12 10 18 18 C 1.50699 * 109.46791 * 185.74888 * 3 2 1 19 19 C 1.38245 * 119.98694 * 279.72434 * 18 3 2 20 20 C 1.38213 * 120.01301 * 179.72625 * 19 18 3 21 21 C 1.38356 * 119.98684 * 0.55084 * 20 19 18 22 22 Cl 1.73604 * 120.01448 * 179.74686 * 21 20 19 23 23 C 1.38353 * 119.97046 * 359.72150 * 21 20 19 24 24 C 1.38213 * 119.98720 * 0.02562 * 23 21 20 25 25 H 1.09003 * 109.47164 * 294.14059 * 1 2 3 26 26 H 1.09000 * 109.47592 * 54.14467 * 1 2 3 27 27 H 1.09001 * 109.47074 * 174.14402 * 1 2 3 28 28 H 1.09002 * 109.46785 * 240.00133 * 2 1 3 29 29 H 1.08998 * 109.46854 * 120.00095 * 2 1 3 30 30 H 1.00905 * 110.99977 * 333.01591 * 5 3 2 31 31 H 1.08999 * 109.47484 * 59.99699 * 8 6 5 32 32 H 1.08994 * 109.47525 * 179.97438 * 8 6 5 33 33 H 1.08998 * 109.47085 * 300.00019 * 8 6 5 34 34 H 1.08997 * 109.46804 * 175.00006 * 9 6 5 35 35 H 1.08996 * 109.46804 * 55.00065 * 9 6 5 36 36 H 0.97007 * 119.99630 * 179.97438 * 13 12 10 37 37 H 1.08003 * 119.99029 * 0.02562 * 19 18 3 38 38 H 1.08001 * 120.00914 * 180.27420 * 20 19 18 39 39 H 1.08000 * 120.00433 * 179.97438 * 23 21 20 40 40 H 1.08007 * 119.98976 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5950 1.9852 -0.8341 5 7 1.6668 2.0938 1.2627 6 6 1.4918 3.5405 1.0773 7 1 1.1194 3.7355 0.0717 8 6 2.8361 4.2455 1.2690 9 6 0.4879 4.0686 2.1042 10 6 -0.8672 3.4657 1.8378 11 1 -0.9994 2.7753 1.0178 12 6 -1.9372 3.7915 2.6440 13 7 -1.7763 4.6326 3.6421 14 14 -3.6154 3.0383 2.3186 15 1 -3.7454 1.7708 3.0814 16 1 -4.6750 3.9858 2.7485 17 1 -3.7597 2.7595 0.8672 18 6 3.5402 1.4449 -0.1423 19 6 4.3392 1.2045 0.9599 20 6 5.7151 1.2009 0.8289 21 6 6.2930 1.4494 -0.4034 22 17 8.0212 1.4516 -0.5675 23 6 5.4929 1.6955 -1.5050 24 6 4.1170 1.6936 -1.3737 25 1 -0.3634 0.4203 0.9378 26 1 -0.3634 0.6019 -0.8329 27 1 -0.3633 -1.0223 -0.1049 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.8354 1.6761 1.6531 31 1 3.5512 3.8694 0.5375 32 1 2.7063 5.3189 1.1310 33 1 3.2085 4.0505 2.2746 34 1 0.4247 5.1538 2.0255 35 1 0.8163 3.7955 3.1070 36 1 -2.5292 4.8621 4.2091 37 1 3.8880 1.0146 1.9226 38 1 6.3391 1.0087 1.6891 39 1 5.9434 1.8899 -2.4671 40 1 3.4924 1.8853 -2.2337 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299690035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:51 Heat of formation + Delta-G solvation = -7.174595 kcal Electronic energy + Delta-G solvation = -20040.244311 eV Core-core repulsion = 17072.567969 eV Total energy + Delta-G solvation = -2967.676342 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.60501 -37.29357 -36.24135 -34.10402 -32.30475 -30.97215 -30.73012 -28.80683 -27.34108 -25.14953 -23.07697 -22.73614 -22.02059 -19.98536 -19.48535 -17.06775 -16.37637 -15.67006 -15.46774 -15.05956 -14.53871 -14.30456 -13.93752 -13.43557 -13.41500 -13.27657 -12.90590 -12.51632 -12.24475 -11.83367 -11.66566 -11.46172 -11.42993 -11.26804 -11.23525 -11.02223 -10.79571 -10.78429 -10.61877 -10.46719 -10.43565 -10.17851 -9.23957 -9.09673 -8.93245 -8.42792 -8.38155 -7.76501 -6.05692 -4.09076 1.24739 1.41101 2.14542 3.26252 3.33899 3.35285 3.73855 4.39743 4.64728 4.92498 4.96465 4.98672 5.24135 5.30738 5.39898 5.46015 5.52176 5.61955 5.81044 5.88154 5.97948 6.00671 6.08381 6.13205 6.25040 6.29228 6.30073 6.36180 6.41889 6.55982 6.57537 6.77928 6.91831 6.94572 6.96663 7.50539 7.61502 7.93882 8.02803 8.24597 8.34153 8.97522 9.55370 11.05137 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028967 B = 0.003995 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.398018 B = 7006.829851 C = 7600.147522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.119 4.119 3 C 0.120 3.880 4 H 0.052 0.948 5 N -0.676 5.676 6 C 0.091 3.909 7 H 0.030 0.970 8 C -0.135 4.135 9 C 0.019 3.981 10 C -0.524 4.524 11 H 0.053 0.947 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.887 3.113 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.051 4.051 19 C -0.071 4.071 20 C -0.117 4.117 21 C -0.043 4.043 22 Cl -0.086 7.086 23 C -0.116 4.116 24 C -0.111 4.111 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.360 0.640 31 H 0.039 0.961 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.020 0.980 35 H 0.025 0.975 36 H 0.261 0.739 37 H 0.141 0.859 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.999 -8.321 -8.670 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.157 4.157 3 C 0.009 3.991 4 H 0.070 0.930 5 N -0.312 5.312 6 C -0.019 4.019 7 H 0.048 0.952 8 C -0.193 4.193 9 C -0.018 4.018 10 C -0.562 4.562 11 H 0.071 0.929 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.714 3.286 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.052 4.052 19 C -0.090 4.090 20 C -0.136 4.136 21 C -0.069 4.069 22 Cl -0.058 7.058 23 C -0.134 4.134 24 C -0.130 4.130 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.184 0.816 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.158 0.842 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 13.670 -8.169 -8.302 17.959 hybrid contribution -1.621 -0.196 -0.639 1.753 sum 12.049 -8.365 -8.941 17.179 Atomic orbital electron populations 1.21873 0.95236 1.01397 1.03168 1.21684 0.96181 0.95575 1.02247 1.20557 0.90079 0.94864 0.93586 0.92978 1.60559 1.43010 1.04325 1.23302 1.21675 0.94871 0.86375 0.98954 0.95178 1.21830 0.97552 0.98786 1.01137 1.19307 0.92058 0.96415 0.94067 1.21183 0.94214 1.27053 1.13800 0.92859 1.24981 0.98841 0.95086 0.95099 1.69961 1.31321 1.33864 1.17720 0.86685 0.84257 0.79134 0.78482 1.20586 1.21256 1.19960 1.20136 0.96296 0.96148 0.92631 1.21060 0.91446 0.96796 0.99668 1.21090 0.95547 1.01204 0.95757 1.20875 0.83715 1.06510 0.95830 1.98346 1.12074 1.97227 1.98135 1.20898 0.93365 1.01563 0.97621 1.20997 0.93807 1.00521 0.97684 0.91217 0.92782 0.92857 0.91986 0.91126 0.81623 0.94186 0.93696 0.92850 0.96129 0.95662 0.92950 0.84152 0.85436 0.85572 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.66 37.16 0.36 -1.82 16 2 C -0.12 -1.53 5.46 -26.73 -0.15 -1.68 16 3 C 0.12 1.75 2.25 -68.87 -0.15 1.60 16 4 H 0.05 0.81 7.18 -51.93 -0.37 0.44 16 5 N -0.68 -11.81 5.41 -100.96 -0.55 -12.36 16 6 C 0.09 1.80 2.60 -67.71 -0.18 1.62 16 7 H 0.03 0.62 7.33 -51.93 -0.38 0.24 16 8 C -0.14 -2.43 9.26 37.16 0.34 -2.08 16 9 C 0.02 0.46 4.55 -27.88 -0.13 0.34 16 10 C -0.52 -13.77 8.11 -34.44 -0.28 -14.04 16 11 H 0.05 1.34 7.54 -52.48 -0.40 0.95 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 14 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 C -0.05 -0.69 3.24 -104.62 -0.34 -1.03 16 19 C -0.07 -0.95 9.18 -39.59 -0.36 -1.32 16 20 C -0.12 -1.45 9.83 -39.55 -0.39 -1.84 16 21 C -0.04 -0.52 6.32 -39.50 -0.25 -0.77 16 22 Cl -0.09 -0.97 28.96 -51.86 -1.50 -2.47 16 23 C -0.12 -1.36 9.83 -39.55 -0.39 -1.75 16 24 C -0.11 -1.37 9.67 -39.59 -0.38 -1.75 16 25 H 0.07 1.10 6.67 -51.93 -0.35 0.75 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.36 6.85 5.08 -39.29 -0.20 6.65 16 31 H 0.04 0.67 6.48 -51.93 -0.34 0.33 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.14 1.93 7.71 -52.48 -0.40 1.53 16 38 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.35 8.04 -52.48 -0.42 0.93 16 LS Contribution 339.50 15.07 5.12 5.12 Total: -1.00 -27.48 339.50 -9.83 -37.30 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.22 Total: 4.74 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -2.39 Total: -22.94 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.19 Total: -37.51 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.48 -9.83 -37.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299690035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.126 kcal (2) G-P(sol) polarization free energy of solvation -27.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds