Wall clock time and date at job start Tue Mar 31 2020 05:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46757 * 2 1 4 4 H 1.09000 * 109.47274 * 305.74522 * 3 2 1 5 5 N 1.46894 * 109.47392 * 65.74967 * 3 2 1 6 6 C 1.46897 * 111.00342 * 209.06274 * 5 3 2 7 7 H 1.08998 * 109.47069 * 31.99496 * 6 5 3 8 8 C 1.52995 * 109.47296 * 271.99468 * 6 5 3 9 9 C 1.53006 * 109.47343 * 151.99143 * 6 5 3 10 10 C 1.50693 * 109.47108 * 295.00107 * 9 6 5 11 11 H 1.08005 * 120.00131 * 359.97438 * 10 9 6 12 12 C 1.37877 * 119.99863 * 179.72323 * 10 9 6 13 13 N 1.31510 * 119.99840 * 0.27831 * 12 10 9 14 14 Si 1.86805 * 120.00071 * 180.27649 * 12 10 9 15 15 H 1.48501 * 109.47239 * 89.99858 * 14 12 10 16 16 H 1.48501 * 109.46950 * 210.00103 * 14 12 10 17 17 H 1.48500 * 109.46842 * 330.00007 * 14 12 10 18 18 C 1.50699 * 109.46791 * 185.74888 * 3 2 1 19 19 C 1.38245 * 119.98694 * 279.72434 * 18 3 2 20 20 C 1.38213 * 120.01301 * 179.72625 * 19 18 3 21 21 C 1.38356 * 119.98684 * 0.55084 * 20 19 18 22 22 Cl 1.73604 * 120.01448 * 179.74686 * 21 20 19 23 23 C 1.38353 * 119.97046 * 359.72150 * 21 20 19 24 24 C 1.38213 * 119.98720 * 0.02562 * 23 21 20 25 25 H 1.09003 * 109.47164 * 294.14059 * 1 2 3 26 26 H 1.09000 * 109.47592 * 54.14467 * 1 2 3 27 27 H 1.09001 * 109.47074 * 174.14402 * 1 2 3 28 28 H 1.09002 * 109.46785 * 240.00133 * 2 1 3 29 29 H 1.08998 * 109.46854 * 120.00095 * 2 1 3 30 30 H 1.00905 * 110.99977 * 333.01591 * 5 3 2 31 31 H 1.08999 * 109.47484 * 59.99699 * 8 6 5 32 32 H 1.08994 * 109.47525 * 179.97438 * 8 6 5 33 33 H 1.08998 * 109.47085 * 300.00019 * 8 6 5 34 34 H 1.08997 * 109.46804 * 175.00006 * 9 6 5 35 35 H 1.08996 * 109.46804 * 55.00065 * 9 6 5 36 36 H 0.97007 * 119.99630 * 179.97438 * 13 12 10 37 37 H 1.08003 * 119.99029 * 0.02562 * 19 18 3 38 38 H 1.08001 * 120.00914 * 180.27420 * 20 19 18 39 39 H 1.08000 * 120.00433 * 179.97438 * 23 21 20 40 40 H 1.08007 * 119.98976 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5950 1.9852 -0.8341 5 7 1.6668 2.0938 1.2627 6 6 1.4918 3.5405 1.0773 7 1 1.1194 3.7355 0.0717 8 6 2.8361 4.2455 1.2690 9 6 0.4879 4.0686 2.1042 10 6 -0.8672 3.4657 1.8378 11 1 -0.9994 2.7753 1.0178 12 6 -1.9372 3.7915 2.6440 13 7 -1.7763 4.6326 3.6421 14 14 -3.6154 3.0383 2.3186 15 1 -3.7454 1.7708 3.0814 16 1 -4.6750 3.9858 2.7485 17 1 -3.7597 2.7595 0.8672 18 6 3.5402 1.4449 -0.1423 19 6 4.3392 1.2045 0.9599 20 6 5.7151 1.2009 0.8289 21 6 6.2930 1.4494 -0.4034 22 17 8.0212 1.4516 -0.5675 23 6 5.4929 1.6955 -1.5050 24 6 4.1170 1.6936 -1.3737 25 1 -0.3634 0.4203 0.9378 26 1 -0.3634 0.6019 -0.8329 27 1 -0.3633 -1.0223 -0.1049 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.8354 1.6761 1.6531 31 1 3.5512 3.8694 0.5375 32 1 2.7063 5.3189 1.1310 33 1 3.2085 4.0505 2.2746 34 1 0.4247 5.1538 2.0255 35 1 0.8163 3.7955 3.1070 36 1 -2.5292 4.8621 4.2091 37 1 3.8880 1.0146 1.9226 38 1 6.3391 1.0087 1.6891 39 1 5.9434 1.8899 -2.4671 40 1 3.4924 1.8853 -2.2337 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299690035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:51 Heat of formation + Delta-G solvation = -20.188365 kcal Electronic energy + Delta-G solvation = -20040.808630 eV Core-core repulsion = 17072.567969 eV Total energy + Delta-G solvation = -2968.240662 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.65446 -38.53581 -37.25836 -35.65073 -34.16844 -31.92319 -31.78917 -30.22003 -29.19975 -26.32552 -24.99128 -23.73444 -23.03390 -21.17852 -21.06332 -18.47967 -18.01478 -16.86287 -16.78185 -16.53107 -15.91998 -15.63141 -15.10455 -14.61795 -14.56717 -14.35483 -14.29829 -13.87452 -13.54525 -13.33554 -13.21948 -13.13033 -12.67954 -12.61494 -12.45829 -12.43604 -12.29752 -12.19829 -12.01821 -11.72601 -11.65064 -11.54672 -11.12143 -10.95755 -10.54996 -9.88212 -9.39446 -9.19723 -8.16610 -6.26518 0.26756 0.45965 1.22373 1.41175 1.41662 1.51513 2.41799 2.75581 3.15173 3.41716 3.86921 3.97602 4.05703 4.14114 4.26820 4.37668 4.45066 4.54336 4.57099 4.65637 4.75547 4.79866 4.84688 4.95610 5.00352 5.10995 5.13640 5.24197 5.25037 5.34393 5.36576 5.40151 5.42476 5.54849 5.58395 5.78677 5.87322 5.95555 6.24379 6.47177 6.72161 6.89267 7.42397 8.95112 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028967 B = 0.003995 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.398018 B = 7006.829851 C = 7600.147522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.112 4.112 3 C 0.122 3.878 4 H 0.047 0.953 5 N -0.674 5.674 6 C 0.103 3.897 7 H 0.024 0.976 8 C -0.124 4.124 9 C 0.026 3.974 10 C -0.528 4.528 11 H 0.063 0.937 12 C 0.006 3.994 13 N -0.931 5.931 14 Si 0.955 3.045 15 H -0.272 1.272 16 H -0.288 1.288 17 H -0.263 1.263 18 C -0.062 4.062 19 C -0.081 4.081 20 C -0.120 4.120 21 C -0.049 4.049 22 Cl -0.078 7.078 23 C -0.114 4.114 24 C -0.112 4.112 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.350 0.650 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.047 0.953 34 H -0.010 1.010 35 H -0.003 1.003 36 H 0.261 0.739 37 H 0.131 0.869 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.564 -9.693 -10.421 19.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.149 4.149 3 C 0.012 3.988 4 H 0.065 0.935 5 N -0.309 5.309 6 C -0.006 4.006 7 H 0.042 0.958 8 C -0.182 4.182 9 C -0.011 4.011 10 C -0.566 4.566 11 H 0.081 0.919 12 C -0.192 4.192 13 N -0.572 5.572 14 Si 0.780 3.220 15 H -0.197 1.197 16 H -0.214 1.214 17 H -0.188 1.188 18 C -0.063 4.063 19 C -0.099 4.099 20 C -0.139 4.139 21 C -0.075 4.075 22 Cl -0.049 7.049 23 C -0.132 4.132 24 C -0.131 4.131 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.172 0.828 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.009 0.991 35 H 0.015 0.985 36 H 0.070 0.930 37 H 0.149 0.851 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.256 -9.553 -10.072 19.898 hybrid contribution -1.711 0.229 -0.109 1.730 sum 12.544 -9.324 -10.180 18.653 Atomic orbital electron populations 1.21850 0.95838 1.02309 1.01507 1.21643 0.95511 0.94513 1.03279 1.20594 0.91095 0.95529 0.91625 0.93543 1.60567 1.42207 1.02877 1.25223 1.21414 0.94481 0.88041 0.96713 0.95759 1.21711 0.96661 0.98577 1.01265 1.19166 0.93262 0.94607 0.94088 1.21529 0.94826 1.26611 1.13644 0.91913 1.25853 1.02942 0.95555 0.94891 1.70102 1.32486 1.35604 1.18984 0.85598 0.79238 0.78277 0.78867 1.19717 1.21441 1.18771 1.20045 0.95366 0.97456 0.93416 1.21013 0.91994 0.97575 0.99321 1.21210 0.95272 1.00920 0.96455 1.21019 0.84354 1.06215 0.95933 1.98351 1.11282 1.97162 1.98099 1.21138 0.93124 1.00601 0.98356 1.21171 0.94330 0.99955 0.97623 0.93736 0.93237 0.90911 0.89893 0.91040 0.82774 0.92519 0.93728 0.93429 0.99128 0.98462 0.92991 0.85101 0.84326 0.83573 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 9.66 71.98 0.70 -3.40 16 2 C -0.11 -2.69 5.46 30.59 0.17 -2.52 16 3 C 0.12 3.41 2.25 44.17 0.10 3.51 16 4 H 0.05 1.37 7.18 -2.39 -0.02 1.36 16 5 N -0.67 -23.54 5.41 -473.33 -2.56 -26.09 16 6 C 0.10 4.13 2.60 44.92 0.12 4.25 16 7 H 0.02 1.00 7.33 -2.39 -0.02 0.99 16 8 C -0.12 -4.43 9.26 71.98 0.67 -3.76 16 9 C 0.03 1.33 4.55 29.85 0.14 1.47 16 10 C -0.53 -28.14 8.11 25.60 0.21 -27.93 16 11 H 0.06 3.16 7.54 -2.91 -0.02 3.14 16 12 C 0.01 0.31 5.46 84.66 0.46 0.78 16 13 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 14 Si 0.95 42.82 29.54 68.60 2.03 44.84 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 16 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 18 C -0.06 -1.57 3.24 -19.86 -0.06 -1.63 16 19 C -0.08 -2.05 9.18 22.27 0.20 -1.85 16 20 C -0.12 -2.77 9.83 22.29 0.22 -2.55 16 21 C -0.05 -1.08 6.32 22.33 0.14 -0.94 16 22 Cl -0.08 -1.57 28.96 -2.72 -0.08 -1.65 16 23 C -0.11 -2.35 9.83 22.29 0.22 -2.13 16 24 C -0.11 -2.47 9.67 22.26 0.22 -2.26 16 25 H 0.04 1.37 6.67 -2.39 -0.02 1.36 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.35 13.48 5.08 -89.69 -0.46 13.02 16 31 H 0.06 1.82 6.48 -2.39 -0.02 1.81 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 35 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 37 H 0.13 3.55 7.71 -2.91 -0.02 3.53 16 38 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 39 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.14 2.62 8.04 -2.91 -0.02 2.60 16 Total: -1.00 -59.00 339.50 3.72 -55.28 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.56 Total: 21.83 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 3.49 Total: -38.97 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -2.27 Total: -81.33 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -59.00 3.72 -55.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299690035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.092 kcal (2) G-P(sol) polarization free energy of solvation -58.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds