Wall clock time and date at job start Tue Mar 31 2020 05:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46872 * 2 1 4 4 N 1.46894 * 109.47205 * 120.00369 * 2 1 3 5 5 C 1.46896 * 111.00186 * 73.13718 * 4 2 1 6 6 C 1.50700 * 109.47191 * 66.04434 * 5 4 2 7 7 H 1.07995 * 119.99935 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00096 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99827 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99895 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47080 * 60.00148 * 10 8 6 12 12 H 1.48501 * 109.46852 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46940 * 299.99924 * 10 8 6 14 14 C 1.46904 * 111.00099 * 309.18394 * 4 2 1 15 15 C 1.52995 * 109.47198 * 199.87722 * 14 4 2 16 16 C 1.50704 * 109.47249 * 174.79420 * 15 14 4 17 17 C 1.38236 * 119.98798 * 270.29817 * 16 15 14 18 18 C 1.38221 * 120.01212 * 180.25195 * 17 16 15 19 19 C 1.38347 * 119.98593 * 359.46875 * 18 17 16 20 20 Cl 1.73596 * 120.01291 * 180.27427 * 19 18 17 21 21 C 1.38356 * 119.97386 * 0.25513 * 19 18 17 22 22 C 1.38217 * 119.98848 * 359.97438 * 21 19 18 23 23 H 1.09004 * 109.46977 * 299.99612 * 1 2 3 24 24 H 1.09004 * 109.47358 * 59.99703 * 1 2 3 25 25 H 1.08997 * 109.47133 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46977 * 240.00388 * 2 1 3 27 27 H 1.09002 * 109.46640 * 174.42839 * 3 2 1 28 28 H 1.08996 * 109.47317 * 294.43018 * 3 2 1 29 29 H 1.08997 * 109.47436 * 54.43310 * 3 2 1 30 30 H 1.09005 * 109.47067 * 186.04463 * 5 4 2 31 31 H 1.08999 * 109.47279 * 306.04742 * 5 4 2 32 32 H 0.97001 * 119.99604 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.47252 * 79.87370 * 14 4 2 34 34 H 1.09000 * 109.46718 * 319.87379 * 14 4 2 35 35 H 1.08996 * 109.47502 * 54.79665 * 15 14 4 36 36 H 1.09005 * 109.47454 * 294.79391 * 15 14 4 37 37 H 1.08004 * 119.99613 * 359.97438 * 17 16 15 38 38 H 1.08003 * 120.00576 * 179.74498 * 18 17 16 39 39 H 1.07996 * 120.00570 * 180.02562 * 21 19 18 40 40 H 1.07991 * 119.99692 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.8201 -2.1436 1.0877 6 6 2.6873 -2.6863 -0.0188 7 1 3.3234 -2.0200 -0.5825 8 6 2.6694 -4.0337 -0.3109 9 7 1.8952 -4.8452 0.3758 10 14 3.7449 -4.7065 -1.6821 11 1 5.1705 -4.4245 -1.3766 12 1 3.5431 -6.1734 -1.7950 13 1 3.3756 -4.0563 -2.9651 14 6 1.3782 -0.1646 2.4109 15 6 2.2257 -0.5218 3.6336 16 6 1.6371 0.1273 4.8598 17 6 2.0411 1.3960 5.2313 18 6 1.5054 1.9897 6.3587 19 6 0.5568 1.3183 7.1092 20 17 -0.1217 2.0662 8.5213 21 6 0.1487 0.0508 6.7337 22 6 0.6885 -0.5438 5.6087 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1254 1.4441 0.0998 28 1 1.7603 1.9267 -0.9356 29 1 1.5975 1.9843 0.8359 30 1 2.0913 -2.6211 2.0293 31 1 0.7736 -2.3503 0.8637 32 1 1.8829 -5.7932 0.1706 33 1 0.3855 -0.6021 2.5165 34 1 1.2913 0.9191 2.3331 35 1 3.2446 -0.1637 3.4867 36 1 2.2362 -1.6038 3.7649 37 1 2.7787 1.9217 4.6430 38 1 1.8242 2.9793 6.6512 39 1 -0.5922 -0.4736 7.3189 40 1 0.3703 -1.5333 5.3157 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308667033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:34 Heat of formation + Delta-G solvation = 4.270966 kcal Electronic energy + Delta-G solvation = -19593.973477 eV Core-core repulsion = 16626.793452 eV Total energy + Delta-G solvation = -2967.180026 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.48521 -37.79903 -36.56692 -33.26445 -32.79392 -31.08913 -30.62885 -28.30472 -26.61785 -25.94650 -23.14409 -22.85467 -22.09250 -20.82237 -18.60451 -17.12500 -16.28234 -15.62358 -15.48539 -15.08574 -14.50829 -14.17782 -13.82536 -13.56760 -13.47785 -13.35259 -12.87310 -12.81057 -12.11074 -12.05042 -11.80209 -11.59358 -11.49559 -11.19926 -11.09239 -11.00773 -10.86768 -10.76541 -10.71685 -10.53381 -10.22983 -9.97877 -9.63172 -9.17404 -9.07196 -8.51906 -8.42628 -7.19842 -6.02807 -4.03406 1.12870 1.26296 2.04993 3.32881 3.37230 3.40007 3.60633 4.42005 4.73401 4.75331 4.83489 5.19936 5.29948 5.33293 5.34927 5.52233 5.61051 5.66629 5.70869 5.86356 5.91452 6.01361 6.06698 6.09053 6.17872 6.21281 6.27057 6.29999 6.32558 6.51892 6.61794 6.72739 6.78986 6.83729 6.89624 7.32957 7.42472 7.81489 8.12152 8.24249 8.57218 9.04163 9.60559 11.07924 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024344 B = 0.003522 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.923297 B = 7949.204799 C = 8577.372908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 C -0.140 4.140 4 N -0.531 5.531 5 C 0.191 3.809 6 C -0.506 4.506 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.063 3.937 15 C -0.080 4.080 16 C -0.060 4.060 17 C -0.106 4.106 18 C -0.111 4.111 19 C -0.046 4.046 20 Cl -0.083 7.083 21 C -0.109 4.109 22 C -0.105 4.105 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.030 0.970 31 H -0.006 1.006 32 H 0.261 0.739 33 H 0.027 0.973 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.958 12.908 10.549 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.028 4.028 3 C -0.198 4.198 4 N -0.255 5.255 5 C 0.066 3.934 6 C -0.545 4.545 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.066 4.066 15 C -0.118 4.118 16 C -0.061 4.061 17 C -0.124 4.124 18 C -0.129 4.129 19 C -0.073 4.073 20 Cl -0.054 7.054 21 C -0.128 4.128 22 C -0.123 4.123 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.012 0.988 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.560 12.858 10.720 16.935 hybrid contribution -0.493 -0.625 -0.582 0.986 sum -3.053 12.233 10.138 16.179 Atomic orbital electron populations 1.22442 0.98855 1.02039 1.00548 1.21582 0.91644 0.93963 0.95615 1.21858 1.01587 0.96258 1.00061 1.62297 1.56068 1.07343 0.99753 1.19767 0.95341 0.80775 0.97566 1.21134 1.24092 0.92565 1.16707 0.91995 1.24971 0.95821 0.97024 0.96729 1.69943 1.39054 1.04111 1.40737 0.86603 0.81038 0.77648 0.82372 1.20191 1.21426 1.20337 1.21950 0.95005 0.98954 0.90655 1.20686 0.99832 1.01033 0.90264 1.20245 0.95291 0.94083 0.96472 1.21083 1.00262 0.94945 0.96156 1.21011 0.96463 1.00229 0.95235 1.20876 0.99791 0.95116 0.91473 1.98351 1.84564 1.82334 1.40186 1.21037 1.00565 0.93542 0.97631 1.21156 0.96406 1.00553 0.94191 0.93534 0.93362 0.92127 0.88954 0.92215 0.93407 0.93699 0.95174 0.98846 0.92936 0.95502 0.92026 0.90060 0.90266 0.85010 0.85285 0.85218 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 8.49 37.16 0.32 -2.77 16 2 C 0.08 1.50 2.76 -67.72 -0.19 1.31 16 3 C -0.14 -2.12 9.11 37.16 0.34 -1.78 16 4 N -0.53 -10.74 4.35 -228.09 -0.99 -11.73 16 5 C 0.19 4.73 4.45 -4.98 -0.02 4.70 16 6 C -0.51 -13.78 8.32 -34.44 -0.29 -14.07 16 7 H 0.06 1.67 7.22 -52.49 -0.38 1.30 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.16 13.29 55.43 0.74 -25.43 16 10 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.06 1.07 3.50 -3.82 -0.01 1.05 16 15 C -0.08 -1.24 5.38 -27.88 -0.15 -1.39 16 16 C -0.06 -0.80 5.13 -104.62 -0.54 -1.34 16 17 C -0.11 -1.25 9.70 -39.59 -0.38 -1.64 16 18 C -0.11 -1.23 9.83 -39.55 -0.39 -1.62 16 19 C -0.05 -0.54 6.32 -39.50 -0.25 -0.79 16 20 Cl -0.08 -0.88 28.96 -51.86 -1.50 -2.38 16 21 C -0.11 -1.28 9.83 -39.55 -0.39 -1.67 16 22 C -0.10 -1.34 9.70 -39.59 -0.38 -1.72 16 23 H 0.05 0.74 6.66 -51.93 -0.35 0.39 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 1.18 6.71 -51.93 -0.35 0.83 16 26 H 0.09 1.94 6.61 -51.93 -0.34 1.59 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.63 6.59 -51.93 -0.34 0.28 16 30 H 0.03 0.80 6.73 -51.93 -0.35 0.45 16 31 H -0.01 -0.17 6.56 -51.93 -0.34 -0.51 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.03 0.48 7.34 -51.93 -0.38 0.10 16 34 H 0.06 0.96 6.02 -51.93 -0.31 0.64 16 35 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 36 H 0.08 1.36 6.91 -51.93 -0.36 1.00 16 37 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 39 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 335.84 15.07 5.06 5.06 Total: -1.00 -28.29 335.84 -10.17 -38.46 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.02 Total: -0.03 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -2.43 Total: -20.26 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.26 Total: -37.16 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.29 -10.17 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308667033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.733 kcal (2) G-P(sol) polarization free energy of solvation -28.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds