Wall clock time and date at job start Tue Mar 31 2020 05:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46903 * 109.46708 * 2 1 4 4 C 1.46896 * 111.00255 * 295.91342 * 3 2 1 5 5 C 1.50699 * 109.47287 * 288.43344 * 4 3 2 6 6 H 1.07995 * 120.00186 * 0.68712 * 5 4 3 7 7 C 1.37885 * 119.99689 * 180.68302 * 5 4 3 8 8 N 1.31511 * 119.99726 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00244 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47015 * 89.99800 * 9 7 5 11 11 H 1.48496 * 109.47311 * 209.99747 * 9 7 5 12 12 H 1.48499 * 109.47112 * 330.00156 * 9 7 5 13 13 C 1.46897 * 110.99927 * 59.87637 * 3 2 1 14 14 C 1.52995 * 109.47652 * 66.04224 * 13 3 2 15 15 C 1.52994 * 109.47236 * 179.97438 * 14 13 3 16 16 C 1.50706 * 109.47137 * 180.02562 * 15 14 13 17 17 C 1.38233 * 120.00639 * 99.99895 * 16 15 14 18 18 C 1.38222 * 120.01206 * 179.97438 * 17 16 15 19 19 C 1.38262 * 120.02531 * 0.04186 * 18 17 16 20 20 C 1.38191 * 120.01434 * 359.97438 * 19 18 17 21 21 C 1.38332 * 120.00369 * 279.72608 * 16 15 14 22 22 Cl 1.73603 * 120.01554 * 359.97438 * 21 16 15 23 23 H 1.08998 * 109.46723 * 178.44318 * 1 2 3 24 24 H 1.09003 * 109.46779 * 298.44330 * 1 2 3 25 25 H 1.09006 * 109.47202 * 58.43862 * 1 2 3 26 26 H 1.08999 * 109.47021 * 240.00197 * 2 1 3 27 27 H 1.08990 * 109.47186 * 120.00226 * 2 1 3 28 28 H 1.08998 * 109.47103 * 48.43554 * 4 3 2 29 29 H 1.09007 * 109.47274 * 168.43202 * 4 3 2 30 30 H 0.97001 * 120.00027 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.46778 * 306.03485 * 13 3 2 32 32 H 1.09007 * 109.47092 * 186.04400 * 13 3 2 33 33 H 1.09002 * 109.47170 * 59.99632 * 14 13 3 34 34 H 1.08998 * 109.47002 * 299.99982 * 14 13 3 35 35 H 1.09002 * 109.47296 * 59.99765 * 15 14 13 36 36 H 1.08998 * 109.47156 * 299.99944 * 15 14 13 37 37 H 1.08001 * 119.99519 * 0.02562 * 17 16 15 38 38 H 1.07994 * 119.98838 * 180.02562 * 18 17 16 39 39 H 1.08003 * 119.99295 * 179.97438 * 19 18 17 40 40 H 1.08002 * 120.00882 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6300 2.0812 -1.2335 5 6 2.4338 1.5432 -2.3892 6 1 3.1533 0.7546 -2.2259 7 6 2.2504 2.0579 -3.6552 8 7 2.9514 1.5881 -4.6638 9 14 1.0062 3.4223 -3.9376 10 1 1.6696 4.7400 -3.7676 11 1 0.4601 3.3171 -5.3145 12 1 -0.1000 3.2947 -2.9552 13 6 1.5461 2.1107 1.1862 14 6 2.1751 1.5023 2.4412 15 6 1.6824 2.2586 3.6765 16 6 2.3025 1.6597 4.9126 17 6 3.3939 2.2689 5.5031 18 6 3.9623 1.7200 6.6372 19 6 3.4403 0.5610 7.1811 20 6 2.3495 -0.0490 6.5915 21 6 1.7760 0.5034 5.4598 22 17 0.4006 -0.2578 4.7233 23 1 -0.3633 -1.0273 -0.0279 24 1 -0.3633 0.4895 0.9037 25 1 -0.3634 0.5379 -0.8757 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.5688 1.9193 -1.4223 29 1 1.8208 3.1488 -1.1240 30 1 2.8226 1.9503 -5.5544 31 1 0.4607 2.0339 1.2498 32 1 1.8321 3.1598 1.1085 33 1 3.2605 1.5793 2.3774 34 1 1.8892 0.4534 2.5189 35 1 0.5970 2.1821 3.7404 36 1 1.9687 3.3075 3.5986 37 1 3.8020 3.1743 5.0788 38 1 4.8147 2.1964 7.0984 39 1 3.8851 0.1323 8.0670 40 1 1.9415 -0.9541 7.0167 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343536627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:24 Heat of formation + Delta-G solvation = 9.868688 kcal Electronic energy + Delta-G solvation = -19511.711228 eV Core-core repulsion = 16544.773938 eV Total energy + Delta-G solvation = -2966.937290 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.67931 -37.65160 -36.53266 -34.37543 -32.47676 -30.97448 -30.50428 -29.53317 -27.27665 -24.91431 -23.28218 -22.90078 -21.81611 -20.72668 -19.01794 -17.21155 -16.68937 -16.08494 -15.60836 -15.23315 -14.88204 -14.33982 -14.03813 -13.90962 -13.73254 -13.38693 -12.95053 -12.60755 -12.39898 -11.94246 -11.85798 -11.77494 -11.55775 -11.51566 -11.38425 -11.29073 -10.91083 -10.76424 -10.51293 -10.42415 -10.33304 -9.83950 -9.72220 -9.25013 -9.08279 -8.79119 -8.52110 -7.23250 -6.00882 -3.96857 0.95659 1.05989 2.03567 3.30209 3.37679 3.39529 3.41600 4.45185 4.48831 4.56785 4.71762 4.88509 5.02631 5.12740 5.27930 5.30816 5.36951 5.52595 5.57275 5.68772 5.78430 5.83164 5.92202 5.93979 6.02353 6.05306 6.12174 6.17155 6.25338 6.38467 6.52614 6.53183 6.58021 6.62969 6.84165 6.98693 7.12727 7.67947 7.99118 8.14078 8.72785 9.09361 9.61516 11.12579 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028255 B = 0.003648 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.745346 B = 7673.465919 C = 8081.719320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 N -0.525 5.525 4 C 0.157 3.843 5 C -0.503 4.503 6 H 0.080 0.920 7 C 0.066 3.934 8 N -0.902 5.902 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.050 3.950 14 C -0.108 4.108 15 C -0.086 4.086 16 C -0.063 4.063 17 C -0.106 4.106 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.111 4.111 21 C -0.035 4.035 22 Cl -0.066 7.066 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.057 0.943 28 H -0.004 1.004 29 H 0.020 0.980 30 H 0.262 0.738 31 H 0.028 0.972 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.618 -0.754 24.278 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.070 4.070 3 N -0.247 5.247 4 C 0.031 3.969 5 C -0.541 4.541 6 H 0.098 0.902 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.079 4.079 14 C -0.146 4.146 15 C -0.123 4.123 16 C -0.063 4.063 17 C -0.125 4.125 18 C -0.132 4.132 19 C -0.137 4.137 20 C -0.129 4.129 21 C -0.062 4.062 22 Cl -0.037 7.037 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.013 0.987 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.198 -0.808 24.011 24.125 hybrid contribution -1.629 0.689 -0.369 1.807 sum -3.827 -0.119 23.642 23.950 Atomic orbital electron populations 1.22399 0.99693 1.01198 1.01542 1.22019 0.91784 0.91310 1.01886 1.62153 1.58818 1.01787 1.01982 1.20234 0.94791 0.93881 0.87975 1.21048 1.21900 1.21069 0.90130 0.90225 1.24899 0.95834 0.96654 0.96064 1.69896 1.41191 1.42969 1.00122 0.86890 0.82402 0.83099 0.77524 1.20219 1.21282 1.19342 1.22114 0.96791 0.98056 0.90894 1.21548 1.01328 0.99812 0.91889 1.20701 1.00566 0.99840 0.91240 1.19884 0.95788 0.93769 0.96903 1.21100 0.95229 1.00359 0.95765 1.21248 0.99840 0.96040 0.96118 1.21075 0.96241 0.96060 1.00278 1.21046 0.96654 1.00395 0.94831 1.20873 0.92801 0.95955 0.96557 1.98378 1.42101 1.80813 1.82365 0.93194 0.93454 0.91960 0.89859 0.92422 0.98689 0.96223 0.92767 0.95405 0.91698 0.91172 0.91488 0.90554 0.90600 0.85010 0.85519 0.85366 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 9.26 37.16 0.34 -2.97 16 2 C 0.06 1.13 5.69 -3.82 -0.02 1.11 16 3 N -0.52 -11.01 4.66 -236.08 -1.10 -12.11 16 4 C 0.16 3.84 3.67 -4.98 -0.02 3.82 16 5 C -0.50 -14.43 9.10 -34.44 -0.31 -14.74 16 6 H 0.08 2.50 7.72 -52.49 -0.41 2.09 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 9 Si 0.87 21.70 27.45 -169.99 -4.67 17.04 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.44 6.56 56.52 0.37 -6.07 16 13 C 0.05 0.85 4.71 -3.83 -0.02 0.83 16 14 C -0.11 -1.54 5.07 -26.74 -0.14 -1.68 16 15 C -0.09 -1.00 4.80 -27.88 -0.13 -1.14 16 16 C -0.06 -0.70 5.14 -104.59 -0.54 -1.24 16 17 C -0.11 -1.04 9.67 -39.59 -0.38 -1.42 16 18 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16 19 C -0.12 -0.98 10.05 -39.59 -0.40 -1.38 16 20 C -0.11 -1.05 9.83 -39.55 -0.39 -1.44 16 21 C -0.04 -0.39 6.31 -39.50 -0.25 -0.64 16 22 Cl -0.07 -0.76 26.66 -51.86 -1.38 -2.14 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.76 6.36 -51.93 -0.33 0.43 16 25 H 0.06 1.22 6.21 -51.93 -0.32 0.89 16 26 H 0.08 1.81 7.15 -51.93 -0.37 1.44 16 27 H 0.06 1.00 6.48 -51.93 -0.34 0.67 16 28 H 0.00 -0.11 5.02 -51.93 -0.26 -0.37 16 29 H 0.02 0.48 7.21 -51.93 -0.37 0.11 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.03 0.46 6.03 -51.93 -0.31 0.15 16 32 H 0.06 1.09 7.87 -51.93 -0.41 0.68 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.99 5.71 -51.93 -0.30 0.69 16 35 H 0.08 0.90 7.34 -51.93 -0.38 0.52 16 36 H 0.08 0.80 8.00 -51.93 -0.42 0.39 16 37 H 0.13 1.09 8.04 -52.49 -0.42 0.67 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 330.21 15.07 4.98 4.98 Total: -1.00 -30.92 330.21 -10.06 -40.99 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.92 Total: -1.21 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -2.75 Total: -20.40 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: -0.33 Total: -39.25 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.04 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.38 Total: -2.14 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.92 -10.06 -40.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343536627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.854 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds