Wall clock time and date at job start Tue Mar 31 2020 05:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47061 * 2 1 4 4 H 1.09003 * 109.47601 * 56.92712 * 3 2 1 5 5 C 1.50703 * 109.47277 * 296.93078 * 3 2 1 6 6 C 1.38237 * 119.98828 * 99.99953 * 5 3 2 7 7 C 1.38217 * 120.01197 * 179.97438 * 6 5 3 8 8 C 1.38348 * 119.98579 * 359.97438 * 7 6 5 9 9 Cl 1.73608 * 120.01224 * 180.02562 * 8 7 6 10 10 C 1.38347 * 119.97759 * 0.02562 * 8 7 6 11 11 C 1.38215 * 119.98654 * 359.97438 * 10 8 7 12 12 N 1.46898 * 109.47290 * 176.92949 * 3 2 1 13 13 C 1.46900 * 111.00607 * 181.96815 * 12 3 2 14 14 C 1.52993 * 109.47505 * 196.08072 * 13 12 3 15 15 C 1.46899 * 110.99919 * 305.92425 * 12 3 2 16 16 C 1.50699 * 109.47056 * 298.78799 * 15 12 3 17 17 H 1.07991 * 120.00232 * 3.80300 * 16 15 12 18 18 C 1.37876 * 119.99613 * 183.80487 * 16 15 12 19 19 N 1.31518 * 119.99733 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00385 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47200 * 90.00295 * 20 18 16 22 22 H 1.48506 * 109.47194 * 209.99934 * 20 18 16 23 23 H 1.48500 * 109.47391 * 330.00343 * 20 18 16 24 24 H 1.09003 * 109.47918 * 305.79068 * 1 2 3 25 25 H 1.09008 * 109.47152 * 65.78629 * 1 2 3 26 26 H 1.09006 * 109.47525 * 185.78433 * 1 2 3 27 27 H 1.08999 * 109.47209 * 239.99605 * 2 1 3 28 28 H 1.09000 * 109.46628 * 119.99393 * 2 1 3 29 29 H 1.07997 * 119.99304 * 0.25701 * 6 5 3 30 30 H 1.08003 * 120.00357 * 180.02562 * 7 6 5 31 31 H 1.07997 * 120.01114 * 179.97438 * 10 8 7 32 32 H 1.08001 * 119.99682 * 180.02562 * 11 10 8 33 33 H 1.09003 * 109.47025 * 316.08140 * 13 12 3 34 34 H 1.08998 * 109.46732 * 76.07560 * 13 12 3 35 35 H 1.08997 * 109.47116 * 180.60789 * 14 13 12 36 36 H 1.09005 * 109.46836 * 300.60461 * 14 13 12 37 37 H 1.08993 * 109.47381 * 60.60688 * 14 13 12 38 38 H 1.09004 * 109.47127 * 58.78734 * 15 12 3 39 39 H 1.09000 * 109.47306 * 178.78622 * 15 12 3 40 40 H 0.97004 * 120.00215 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6323 1.9720 0.8612 5 6 1.6007 2.1306 -1.2667 6 6 0.5031 2.9708 -1.2517 7 6 0.1001 3.6026 -2.4131 8 6 0.7958 3.3944 -3.5906 9 17 0.2907 4.1881 -5.0497 10 6 1.8942 2.5533 -3.6051 11 6 2.2963 1.9221 -2.4432 12 7 3.5070 1.4432 0.0742 13 6 4.0311 2.8146 0.1233 14 6 5.5262 2.8013 -0.2014 15 6 3.9764 0.6587 1.2241 16 6 3.4523 1.2712 2.4974 17 1 2.7830 2.1175 2.4540 18 6 3.8275 0.7508 3.7179 19 7 3.3698 1.2850 4.8291 20 14 4.9848 -0.7135 3.7931 21 1 6.3888 -0.2327 3.8462 22 1 4.6900 -1.5156 5.0077 23 1 4.7956 -1.5566 2.5853 24 1 -0.3635 0.6010 0.8336 25 1 -0.3634 0.4215 -0.9373 26 1 -0.3634 -1.0225 0.1036 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 -0.0369 3.1372 -0.3313 30 1 -0.7572 4.2594 -2.4011 31 1 2.4374 2.3901 -4.5242 32 1 3.1540 1.2658 -2.4542 33 1 3.5062 3.4305 -0.6069 34 1 3.8797 3.2258 1.1213 35 1 5.9172 3.8176 -0.1543 36 1 6.0496 2.1767 0.5225 37 1 5.6767 2.4001 -1.2036 38 1 3.6138 -0.3656 1.1375 39 1 5.0662 0.6580 1.2430 40 1 3.6334 0.9187 5.6878 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348543589.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:49 Heat of formation + Delta-G solvation = -1.885752 kcal Electronic energy + Delta-G solvation = -20456.612594 eV Core-core repulsion = 17489.165593 eV Total energy + Delta-G solvation = -2967.447001 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.89826 -38.79719 -37.28535 -34.99695 -34.40860 -31.94382 -31.65320 -31.15182 -28.92476 -26.03366 -24.86044 -23.79354 -22.99573 -21.89348 -20.55434 -18.96189 -17.92584 -17.08810 -16.75878 -16.34416 -15.89444 -15.57425 -15.37455 -14.86584 -14.60561 -14.33549 -14.22076 -13.96726 -13.84113 -13.42753 -13.26792 -13.05913 -12.69590 -12.47874 -12.39210 -12.33726 -12.21262 -12.10101 -11.98976 -11.70036 -11.68845 -11.58022 -11.47463 -11.18897 -10.72646 -9.90424 -9.42774 -8.95689 -8.27823 -6.30797 0.23486 0.42373 1.20472 1.36121 1.38037 1.48810 2.35618 2.72590 3.08373 3.24648 3.83131 3.94532 4.04425 4.23314 4.33723 4.35514 4.50110 4.52026 4.59970 4.60968 4.77317 4.81077 4.86862 4.92998 5.03637 5.07459 5.12363 5.16805 5.23307 5.25571 5.31349 5.33937 5.39929 5.46312 5.49186 5.58477 5.75754 5.91684 6.15837 6.39933 6.48578 6.75581 7.35278 8.88510 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027041 B = 0.004594 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.207805 B = 6092.805717 C = 6485.995641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C 0.131 3.869 4 H 0.022 0.978 5 C -0.064 4.064 6 C -0.113 4.113 7 C -0.111 4.111 8 C -0.046 4.046 9 Cl -0.074 7.074 10 C -0.112 4.112 11 C -0.083 4.083 12 N -0.515 5.515 13 C 0.055 3.945 14 C -0.133 4.133 15 C 0.158 3.842 16 C -0.536 4.536 17 H 0.033 0.967 18 C 0.013 3.987 19 N -0.949 5.949 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.288 1.288 23 H -0.243 1.243 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.126 0.874 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.067 0.933 34 H 0.011 0.989 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.038 0.962 39 H 0.030 0.970 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.837 1.233 -17.899 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C 0.023 3.977 4 H 0.041 0.959 5 C -0.065 4.065 6 C -0.132 4.132 7 C -0.130 4.130 8 C -0.073 4.073 9 Cl -0.045 7.045 10 C -0.130 4.130 11 C -0.102 4.102 12 N -0.238 5.238 13 C -0.074 4.074 14 C -0.190 4.190 15 C 0.030 3.970 16 C -0.575 4.575 17 H 0.051 0.949 18 C -0.184 4.184 19 N -0.590 5.590 20 Si 0.764 3.236 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.166 1.166 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.144 0.856 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.085 0.915 34 H 0.029 0.971 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.685 1.066 -18.287 18.686 hybrid contribution 0.002 0.159 1.728 1.735 sum -3.683 1.225 -16.560 17.008 Atomic orbital electron populations 1.21689 0.94715 1.01939 1.01437 1.21518 0.96371 0.94744 1.02022 1.20367 0.88576 0.96147 0.92644 0.95949 1.19956 0.95134 0.96254 0.95138 1.21093 0.96980 0.96732 0.98353 1.21098 1.00620 1.00578 0.90681 1.20994 0.98477 0.99741 0.88044 1.98352 1.90783 1.79288 1.36055 1.21232 0.95791 0.96418 0.99559 1.21073 0.99439 0.99000 0.90646 1.62538 1.07542 1.12640 1.41075 1.21932 0.96814 0.90049 0.98561 1.21638 0.94371 1.01323 1.01701 1.20123 0.95647 0.94467 0.86717 1.21824 1.28401 1.15473 0.91839 0.94863 1.25820 0.97645 0.99748 0.95209 1.70080 1.46963 1.43554 0.98366 0.85817 0.79375 0.79921 0.78519 1.19501 1.21435 1.16614 0.94015 0.91948 0.91694 0.90804 0.92784 0.85597 0.83689 0.83393 0.84197 0.91475 0.97088 0.91859 0.94151 0.91130 0.94446 0.95229 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.42 71.98 0.68 -3.31 16 2 C -0.11 -3.63 5.09 30.59 0.16 -3.48 16 3 C 0.13 4.70 1.37 44.17 0.06 4.76 16 4 H 0.02 0.98 6.54 -2.39 -0.02 0.96 16 5 C -0.06 -1.88 2.78 -19.86 -0.06 -1.93 16 6 C -0.11 -3.02 8.90 22.26 0.20 -2.82 16 7 C -0.11 -2.57 9.83 22.29 0.22 -2.35 16 8 C -0.05 -1.04 6.32 22.32 0.14 -0.90 16 9 Cl -0.07 -1.48 28.96 -2.72 -0.08 -1.56 16 10 C -0.11 -2.49 9.83 22.29 0.22 -2.27 16 11 C -0.08 -2.15 8.77 22.27 0.20 -1.95 16 12 N -0.52 -19.58 3.82 -879.94 -3.36 -22.95 16 13 C 0.05 2.04 5.25 86.30 0.45 2.49 16 14 C -0.13 -4.23 9.97 71.98 0.72 -3.51 16 15 C 0.16 7.07 3.56 85.56 0.30 7.37 16 16 C -0.54 -29.19 8.01 25.60 0.21 -28.99 16 17 H 0.03 2.04 6.19 -2.92 -0.02 2.02 16 18 C 0.01 0.76 5.47 84.65 0.46 1.22 16 19 N -0.95 -58.23 13.96 21.45 0.30 -57.93 16 20 Si 0.94 42.92 27.39 68.60 1.88 44.80 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.24 -10.19 6.65 99.48 0.66 -9.53 16 24 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.60 7.08 -2.38 -0.02 1.59 16 26 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.05 2.10 6.11 -2.39 -0.01 2.08 16 29 H 0.13 3.36 8.03 -2.91 -0.02 3.33 16 30 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.14 3.61 7.72 -2.91 -0.02 3.59 16 33 H 0.07 2.30 6.42 -2.39 -0.02 2.28 16 34 H 0.01 0.49 6.44 -2.39 -0.02 0.48 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.04 1.41 6.70 -2.38 -0.02 1.39 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.04 1.67 5.39 -2.38 -0.01 1.66 16 39 H 0.03 1.33 5.82 -2.39 -0.01 1.31 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -60.86 327.15 3.67 -57.19 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.98 Total: 16.11 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 3.96 Total: -35.67 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -3.06 Total: -80.88 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.80 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -60.86 3.67 -57.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348543589.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.309 kcal (2) G-P(sol) polarization free energy of solvation -60.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds