Wall clock time and date at job start Tue Mar 31 2020 05:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47104 * 2 1 4 4 H 1.09003 * 109.46813 * 53.84137 * 3 2 1 5 5 C 1.52998 * 109.46927 * 173.84149 * 3 2 1 6 6 C 1.53001 * 109.46990 * 293.84126 * 3 2 1 7 7 H 1.09000 * 109.47089 * 54.95680 * 6 3 2 8 8 N 1.46906 * 109.46731 * 174.95628 * 6 3 2 9 9 C 1.46896 * 110.99762 * 273.48359 * 8 6 3 10 10 C 1.50707 * 109.47006 * 185.21254 * 9 8 6 11 11 H 1.07994 * 119.99763 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00021 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00371 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00098 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.46717 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46847 * 119.99808 * 14 12 10 17 17 H 1.48500 * 109.46962 * 239.99828 * 14 12 10 18 18 C 1.50692 * 109.47064 * 294.95464 * 6 3 2 19 19 C 1.38248 * 119.98766 * 100.00255 * 18 6 3 20 20 C 1.38211 * 120.01461 * 179.97438 * 19 18 6 21 21 C 1.38356 * 119.98857 * 359.97438 * 20 19 18 22 22 Cl 1.73601 * 120.01660 * 180.02562 * 21 20 19 23 23 C 1.38357 * 119.97067 * 0.02562 * 21 20 19 24 24 C 1.38218 * 119.98625 * 359.97438 * 23 21 20 25 25 H 1.08995 * 109.46841 * 305.92995 * 1 2 3 26 26 H 1.09002 * 109.46987 * 65.92303 * 1 2 3 27 27 H 1.08992 * 109.47298 * 185.92289 * 1 2 3 28 28 H 1.08995 * 109.46727 * 240.00152 * 2 1 3 29 29 H 1.09000 * 109.46696 * 120.00231 * 2 1 3 30 30 H 1.09001 * 109.47224 * 179.97438 * 5 3 2 31 31 H 1.09003 * 109.47038 * 299.99824 * 5 3 2 32 32 H 1.09002 * 109.47002 * 59.99666 * 5 3 2 33 33 H 1.00896 * 110.99858 * 37.43617 * 8 6 3 34 34 H 1.09002 * 109.47429 * 305.21334 * 9 8 6 35 35 H 1.09004 * 109.47123 * 65.21419 * 9 8 6 36 36 H 0.96994 * 120.00609 * 179.97438 * 13 12 10 37 37 H 1.08002 * 119.98843 * 0.26012 * 19 18 6 38 38 H 1.07997 * 120.01183 * 180.02562 * 20 19 18 39 39 H 1.07997 * 120.00508 * 179.97438 * 23 21 20 40 40 H 1.08004 * 119.98919 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5895 1.9872 0.8298 5 6 3.5622 1.4453 0.1548 6 6 1.6603 2.1177 -1.3194 7 1 0.5842 2.0365 -1.4726 8 7 2.0427 3.5353 -1.2718 9 6 0.9803 4.3469 -0.6631 10 6 1.3514 5.8051 -0.7472 11 1 2.2831 6.0995 -1.2072 12 6 0.5015 6.7633 -0.2368 13 7 -0.6333 6.4049 0.3230 14 14 0.9612 8.5708 -0.3417 15 1 2.2782 8.7084 -1.0139 16 1 -0.0708 9.2995 -1.1222 17 1 1.0414 9.1414 1.0269 18 6 2.3820 1.4407 -2.4560 19 6 1.7221 0.5100 -3.2368 20 6 2.3832 -0.1108 -4.2797 21 6 3.7057 0.1996 -4.5426 22 17 4.5366 -0.5793 -5.8527 23 6 4.3655 1.1311 -3.7608 24 6 3.7033 1.7513 -2.7182 25 1 -0.3633 0.6030 0.8321 26 1 -0.3633 0.4193 -0.9383 27 1 -0.3633 -1.0221 0.1060 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.9256 2.4729 0.1543 31 1 3.8327 0.9642 1.0948 32 1 4.0127 0.9005 -0.6750 33 1 2.9166 3.6579 -0.7826 34 1 0.0442 4.1789 -1.1958 35 1 0.8595 4.0624 0.3823 36 1 -1.2311 7.0789 0.6824 37 1 0.6883 0.2715 -3.0346 38 1 1.8676 -0.8375 -4.8898 39 1 5.3979 1.3736 -3.9653 40 1 4.2182 2.4788 -2.1082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411476594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:33 Heat of formation + Delta-G solvation = -17.703736 kcal Electronic energy + Delta-G solvation = -20077.498571 eV Core-core repulsion = 17109.365651 eV Total energy + Delta-G solvation = -2968.132920 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.03321 -38.57557 -37.15765 -35.70063 -34.12163 -32.12990 -31.89931 -30.63001 -28.66745 -26.32582 -24.57732 -23.68926 -23.14314 -22.63765 -20.39242 -18.75847 -17.84069 -16.98862 -16.65849 -16.34724 -16.14527 -15.56767 -15.03287 -14.87432 -14.53713 -14.29888 -14.21474 -14.12003 -13.97353 -13.73979 -13.19808 -12.88180 -12.79601 -12.69836 -12.46467 -12.40822 -12.30339 -12.06294 -12.03905 -11.73576 -11.57286 -11.45205 -11.38318 -11.19025 -10.64493 -9.86302 -9.41658 -9.02882 -8.20553 -6.31070 0.26904 0.43698 1.22204 1.40913 1.42051 1.55338 2.40593 2.73749 3.12696 3.54878 3.82250 3.88715 3.96506 4.05571 4.10517 4.20274 4.40518 4.47197 4.54090 4.63031 4.72080 4.79968 4.82553 4.88148 4.99908 5.08685 5.11812 5.16747 5.19753 5.25445 5.32818 5.34011 5.36259 5.38869 5.55681 5.62746 5.74741 5.92717 6.06232 6.49723 6.75347 6.91424 7.39815 8.90433 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017338 B = 0.004453 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.594714 B = 6285.846782 C = 7232.953846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.113 4.113 4 H 0.048 0.952 5 C -0.148 4.148 6 C 0.126 3.874 7 H 0.066 0.934 8 N -0.679 5.679 9 C 0.215 3.785 10 C -0.531 4.531 11 H 0.063 0.937 12 C 0.003 3.997 13 N -0.933 5.933 14 Si 0.968 3.032 15 H -0.263 1.263 16 H -0.280 1.280 17 H -0.278 1.278 18 C -0.052 4.052 19 C -0.110 4.110 20 C -0.111 4.111 21 C -0.048 4.048 22 Cl -0.075 7.075 23 C -0.116 4.116 24 C -0.091 4.091 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.335 0.665 34 H -0.004 1.004 35 H -0.036 1.036 36 H 0.264 0.736 37 H 0.137 0.863 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.430 -16.138 -5.680 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.133 4.133 4 H 0.066 0.934 5 C -0.205 4.205 6 C 0.015 3.985 7 H 0.084 0.916 8 N -0.310 5.310 9 C 0.087 3.913 10 C -0.569 4.569 11 H 0.081 0.919 12 C -0.195 4.195 13 N -0.574 5.574 14 Si 0.793 3.207 15 H -0.187 1.187 16 H -0.206 1.206 17 H -0.203 1.203 18 C -0.053 4.053 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.075 4.075 22 Cl -0.046 7.046 23 C -0.134 4.134 24 C -0.110 4.110 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.014 0.986 35 H -0.018 1.018 36 H 0.073 0.927 37 H 0.155 0.845 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.151 -15.986 -6.364 19.039 hybrid contribution -0.200 0.915 1.028 1.391 sum 7.951 -15.071 -5.336 17.856 Atomic orbital electron populations 1.21827 0.96070 1.01979 1.01245 1.21501 0.95728 0.94748 1.02666 1.21737 0.97448 0.97434 0.96710 0.93389 1.21980 0.94268 1.01639 1.02646 1.20555 0.98035 0.87654 0.92211 0.91561 1.60673 1.06187 1.05482 1.58673 1.19157 0.89763 0.91985 0.90400 1.21567 1.05603 0.92198 1.37528 0.91922 1.25883 0.94788 1.04089 0.94732 1.70088 1.11577 1.35308 1.40397 0.85349 0.78519 0.78965 0.77855 1.18735 1.20613 1.20343 1.19893 0.94309 0.95219 0.95903 1.21111 1.00499 0.96504 0.94769 1.21138 0.92688 1.00937 0.98164 1.20983 0.93976 0.99238 0.93306 1.98350 1.78502 1.80039 1.47748 1.21184 1.01140 0.96098 0.94992 1.21026 0.94230 0.98671 0.97056 0.94201 0.93236 0.91006 0.90909 0.91193 0.93238 0.91652 0.90975 0.84499 0.98571 1.01815 0.92733 0.84522 0.83414 0.83818 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.55 71.98 0.69 -3.02 16 2 C -0.11 -2.56 5.25 30.60 0.16 -2.40 16 3 C -0.11 -3.29 2.24 -10.79 -0.02 -3.32 16 4 H 0.05 1.67 7.55 -2.39 -0.02 1.65 16 5 C -0.15 -3.72 7.77 71.98 0.56 -3.16 16 6 C 0.13 4.20 1.97 44.17 0.09 4.28 16 7 H 0.07 2.44 5.93 -2.39 -0.01 2.42 16 8 N -0.68 -28.04 5.64 -499.45 -2.82 -30.86 16 9 C 0.21 11.26 5.27 85.56 0.45 11.71 16 10 C -0.53 -30.01 9.36 25.60 0.24 -29.77 16 11 H 0.06 3.47 7.81 -2.91 -0.02 3.44 16 12 C 0.00 0.18 5.46 84.65 0.46 0.64 16 13 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 14 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 15 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 18 C -0.05 -1.49 3.87 -19.86 -0.08 -1.56 16 19 C -0.11 -2.73 8.58 22.27 0.19 -2.54 16 20 C -0.11 -2.45 9.83 22.29 0.22 -2.24 16 21 C -0.05 -1.11 6.32 22.33 0.14 -0.97 16 22 Cl -0.08 -1.54 28.96 -2.72 -0.08 -1.62 16 23 C -0.12 -2.72 9.83 22.29 0.22 -2.50 16 24 C -0.09 -2.43 6.97 22.27 0.16 -2.28 16 25 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 1.24 6.59 -2.39 -0.02 1.23 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.61 6.40 -2.39 -0.02 1.59 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.32 6.25 -2.39 -0.01 1.31 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.66 5.66 -2.39 -0.01 1.65 16 33 H 0.34 13.05 6.01 -89.70 -0.54 12.51 16 34 H 0.00 -0.22 7.92 -2.39 -0.02 -0.24 16 35 H -0.04 -2.01 7.58 -2.39 -0.02 -2.03 16 36 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 37 H 0.14 3.04 7.85 -2.91 -0.02 3.02 16 38 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 40 H 0.13 3.48 6.44 -2.91 -0.02 3.46 16 Total: -1.00 -61.93 329.99 3.38 -58.55 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.49 Total: 20.52 kcal Atomic # 6 Polarization: -40.56 SS G_CDS: 3.47 Total: -37.09 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -2.53 Total: -86.62 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -61.93 3.38 -58.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411476594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.846 kcal (2) G-P(sol) polarization free energy of solvation -61.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds