Wall clock time and date at job start Tue Mar 31 2020 05:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46826 * 2 1 4 4 H 1.08996 * 109.47291 * 55.00236 * 3 2 1 5 5 C 1.53000 * 109.47031 * 175.00321 * 3 2 1 6 6 C 1.52999 * 109.46887 * 294.99857 * 3 2 1 7 7 H 1.09006 * 109.47174 * 61.19549 * 6 3 2 8 8 N 1.46903 * 109.47295 * 301.19631 * 6 3 2 9 9 C 1.46901 * 111.00041 * 111.25087 * 8 6 3 10 10 C 1.50698 * 109.47051 * 176.18279 * 9 8 6 11 11 H 1.08005 * 120.00096 * 359.97438 * 10 9 8 12 12 C 1.37870 * 120.00247 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00077 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00269 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.46908 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.47072 * 120.00403 * 14 12 10 17 17 H 1.48500 * 109.47268 * 239.99966 * 14 12 10 18 18 C 1.50703 * 109.47316 * 181.19542 * 6 3 2 19 19 C 1.38245 * 119.98467 * 265.37801 * 18 6 3 20 20 C 1.38207 * 120.01202 * 179.97438 * 19 18 6 21 21 C 1.38349 * 119.98718 * 0.29826 * 20 19 18 22 22 Cl 1.73604 * 120.01378 * 179.70008 * 21 20 19 23 23 C 1.38360 * 119.97545 * 359.42545 * 21 20 19 24 24 C 1.38212 * 119.97927 * 0.54909 * 23 21 20 25 25 H 1.08993 * 109.47652 * 305.57230 * 1 2 3 26 26 H 1.09003 * 109.47253 * 65.57412 * 1 2 3 27 27 H 1.09002 * 109.46923 * 185.56320 * 1 2 3 28 28 H 1.09000 * 109.47507 * 239.99479 * 2 1 3 29 29 H 1.09005 * 109.47167 * 119.99488 * 2 1 3 30 30 H 1.08996 * 109.47262 * 185.66056 * 5 3 2 31 31 H 1.08997 * 109.47258 * 305.66699 * 5 3 2 32 32 H 1.09007 * 109.47181 * 65.66455 * 5 3 2 33 33 H 1.00896 * 110.99925 * 347.29072 * 8 6 3 34 34 H 1.09007 * 109.46466 * 296.17529 * 9 8 6 35 35 H 1.08993 * 109.47063 * 56.17997 * 9 8 6 36 36 H 0.97001 * 120.00907 * 179.97438 * 13 12 10 37 37 H 1.07997 * 119.99028 * 359.97438 * 19 18 6 38 38 H 1.08000 * 120.00562 * 180.02562 * 20 19 18 39 39 H 1.07998 * 120.00991 * 180.29894 * 23 21 20 40 40 H 1.08002 * 119.99121 * 179.76290 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4444 0.1256 6 6 1.6351 2.1265 -1.3074 7 1 0.5481 2.1440 -1.3869 8 7 2.1972 1.3836 -2.4432 9 6 1.1374 0.7213 -3.2154 10 6 1.7402 0.0491 -4.4219 11 1 2.8042 0.1083 -4.5977 12 6 0.9336 -0.6415 -5.3012 13 7 -0.3620 -0.7132 -5.0874 14 14 1.6808 -1.4742 -6.7972 15 1 3.1481 -1.2459 -6.8094 16 1 1.4077 -2.9328 -6.7399 17 1 1.0806 -0.9064 -8.0311 18 6 2.1625 3.5382 -1.3201 19 6 1.3568 4.5806 -0.9013 20 6 1.8400 5.8754 -0.9122 21 6 3.1283 6.1289 -1.3482 22 17 3.7334 7.7559 -1.3696 23 6 3.9362 5.0846 -1.7618 24 6 3.4519 3.7902 -1.7499 25 1 -0.3634 0.5978 0.8358 26 1 -0.3634 0.4250 -0.9357 27 1 -0.3633 -1.0228 0.0996 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.9197 2.4700 0.2268 31 1 3.8576 0.8702 1.0046 32 1 4.0032 0.9944 -0.7651 33 1 2.8887 0.7175 -2.1330 34 1 0.6457 -0.0251 -2.5914 35 1 0.4068 1.4624 -3.5394 36 1 -0.9297 -1.1988 -5.7063 37 1 0.3495 4.3830 -0.5655 38 1 1.2106 6.6896 -0.5847 39 1 4.9436 5.2814 -2.0977 40 1 4.0811 2.9753 -2.0764 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411476607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:40 Heat of formation + Delta-G solvation = -1.588581 kcal Electronic energy + Delta-G solvation = -20116.645086 eV Core-core repulsion = 17149.210971 eV Total energy + Delta-G solvation = -2967.434115 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.70038 -37.60951 -36.20446 -33.56241 -32.22402 -30.92959 -30.90514 -29.45298 -26.81966 -24.86240 -23.28716 -22.60850 -21.54536 -21.25311 -18.96295 -17.02910 -16.34718 -15.81975 -15.39191 -14.99418 -14.52484 -14.16146 -13.77956 -13.41125 -13.35415 -13.18651 -12.86404 -12.59738 -12.48441 -12.17971 -11.66570 -11.50028 -11.40190 -11.32699 -11.19410 -11.05919 -10.76198 -10.67493 -10.64344 -10.38997 -10.24601 -10.19043 -9.90243 -9.17360 -8.79635 -8.50315 -8.25612 -7.32598 -6.04475 -4.05774 1.38386 1.53321 2.24643 3.29685 3.37591 3.42018 3.86243 4.41850 4.85397 4.99450 5.04068 5.09038 5.14936 5.31806 5.34148 5.45342 5.60016 5.65695 5.73213 5.76351 5.84582 5.89307 5.92541 6.05849 6.15253 6.22147 6.26043 6.33825 6.42145 6.42479 6.53311 6.62750 6.68110 6.90763 7.05727 7.24836 7.41867 7.77917 8.11552 8.37528 8.57212 9.03250 9.59212 11.06276 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015872 B = 0.004709 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.638542 B = 5944.468867 C = 6978.839862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.104 4.104 4 H 0.067 0.933 5 C -0.150 4.150 6 C 0.120 3.880 7 H 0.076 0.924 8 N -0.681 5.681 9 C 0.192 3.808 10 C -0.511 4.511 11 H 0.061 0.939 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.895 3.105 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.284 1.284 18 C -0.045 4.045 19 C -0.112 4.112 20 C -0.116 4.116 21 C -0.045 4.045 22 Cl -0.089 7.089 23 C -0.119 4.119 24 C -0.072 4.072 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.331 0.669 34 H -0.002 1.002 35 H 0.024 0.976 36 H 0.260 0.740 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.372 9.106 12.042 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.123 4.123 4 H 0.086 0.914 5 C -0.207 4.207 6 C 0.009 3.991 7 H 0.094 0.906 8 N -0.312 5.312 9 C 0.066 3.934 10 C -0.550 4.550 11 H 0.080 0.920 12 C -0.144 4.144 13 N -0.537 5.537 14 Si 0.723 3.277 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.046 4.046 19 C -0.130 4.130 20 C -0.135 4.135 21 C -0.071 4.071 22 Cl -0.060 7.060 23 C -0.137 4.137 24 C -0.091 4.091 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.151 0.849 34 H 0.016 0.984 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.283 9.702 11.528 15.967 hybrid contribution -0.017 -0.968 -0.381 1.041 sum 5.267 8.734 11.147 15.109 Atomic orbital electron populations 1.21848 0.95805 1.01438 1.02063 1.21616 0.96310 0.95868 1.02171 1.21629 0.96353 0.96363 0.97966 0.91445 1.21927 0.95398 1.01797 1.01602 1.20522 0.98463 0.89804 0.90278 0.90600 1.60715 1.17177 1.32656 1.20697 1.19713 0.89175 0.92576 0.91960 1.21208 0.94537 1.31495 1.07772 0.92037 1.24953 0.94795 0.96543 0.98154 1.69958 1.03672 1.42693 1.37362 0.86484 0.79412 0.78976 0.82780 1.19700 1.21165 1.21066 1.20206 0.93672 0.95666 0.95079 1.20978 0.99910 0.91587 1.00560 1.20883 0.93979 0.97386 1.01212 1.20842 0.95307 0.85050 1.05895 1.98338 1.88155 1.22134 1.97413 1.21063 0.99830 0.91933 1.00908 1.21039 0.95801 0.95583 0.96643 0.93521 0.91507 0.93034 0.90917 0.92499 0.92379 0.93167 0.91867 0.84882 0.98428 0.95742 0.93029 0.85650 0.85641 0.85550 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.20 37.15 0.34 -1.93 16 2 C -0.12 -1.75 4.90 -26.73 -0.13 -1.88 16 3 C -0.10 -1.40 2.20 -90.62 -0.20 -1.60 16 4 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.15 -1.85 7.97 37.16 0.30 -1.56 16 6 C 0.12 1.94 1.95 -68.86 -0.13 1.80 16 7 H 0.08 1.33 6.04 -51.93 -0.31 1.02 16 8 N -0.68 -13.17 5.00 -109.21 -0.55 -13.72 16 9 C 0.19 4.69 4.63 -4.98 -0.02 4.66 16 10 C -0.51 -13.94 9.35 -34.44 -0.32 -14.26 16 11 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 14 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 C -0.05 -0.68 4.56 -104.62 -0.48 -1.16 16 19 C -0.11 -1.53 9.68 -39.59 -0.38 -1.92 16 20 C -0.12 -1.50 9.83 -39.55 -0.39 -1.89 16 21 C -0.04 -0.59 6.32 -39.50 -0.25 -0.84 16 22 Cl -0.09 -1.08 28.96 -51.86 -1.50 -2.58 16 23 C -0.12 -1.61 9.83 -39.55 -0.39 -1.99 16 24 C -0.07 -1.06 7.35 -39.59 -0.29 -1.35 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.15 5.43 -51.93 -0.28 0.87 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.21 5.98 -51.93 -0.31 0.90 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.70 6.36 -51.93 -0.33 0.37 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.82 6.28 -51.92 -0.33 0.49 16 33 H 0.33 6.12 5.34 -39.29 -0.21 5.91 16 34 H 0.00 -0.05 5.52 -51.93 -0.29 -0.34 16 35 H 0.02 0.67 8.08 -51.93 -0.42 0.25 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.14 2.02 7.17 -52.49 -0.38 1.65 16 LS Contribution 328.53 15.07 4.95 4.95 Total: -1.00 -28.21 328.53 -9.61 -37.83 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.78 Total: 4.97 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -2.45 Total: -22.42 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.19 Total: -39.11 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.50 Total: -2.58 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.21 -9.61 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411476607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.237 kcal (2) G-P(sol) polarization free energy of solvation -28.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds