Wall clock time and date at job start Tue Mar 31 2020 05:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47173 * 2 1 4 4 H 1.08992 * 109.47146 * 54.99831 * 3 2 1 5 5 C 1.53002 * 109.46839 * 294.99796 * 3 2 1 6 6 C 1.53002 * 109.46934 * 174.99773 * 3 2 1 7 7 H 1.09002 * 109.46831 * 179.97438 * 6 3 2 8 8 N 1.46894 * 109.47143 * 299.99617 * 6 3 2 9 9 C 1.46894 * 111.00442 * 275.00163 * 8 6 3 10 10 C 1.50706 * 109.47461 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99528 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99856 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99947 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99673 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47299 * 89.99528 * 14 12 10 16 16 H 1.48498 * 109.46672 * 209.99624 * 14 12 10 17 17 H 1.48504 * 109.46948 * 329.99236 * 14 12 10 18 18 C 1.50696 * 109.46922 * 59.99852 * 6 3 2 19 19 C 1.38247 * 119.98658 * 100.00234 * 18 6 3 20 20 C 1.38216 * 120.01497 * 179.97438 * 19 18 6 21 21 C 1.38357 * 119.98603 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.01134 * 180.02562 * 21 20 19 23 23 C 1.38347 * 119.97107 * 0.28224 * 21 20 19 24 24 C 1.38219 * 119.98930 * 359.40143 * 23 21 20 25 25 H 1.09002 * 109.46819 * 60.00133 * 1 2 3 26 26 H 1.09008 * 109.47257 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47539 * 300.00362 * 1 2 3 28 28 H 1.08999 * 109.47027 * 239.99755 * 2 1 3 29 29 H 1.09002 * 109.46819 * 119.99867 * 2 1 3 30 30 H 1.09002 * 109.47272 * 299.99955 * 5 3 2 31 31 H 1.08995 * 109.47533 * 59.99944 * 5 3 2 32 32 H 1.09005 * 109.46846 * 180.02562 * 5 3 2 33 33 H 1.00902 * 111.00177 * 38.96090 * 8 6 3 34 34 H 1.08996 * 109.47182 * 300.00166 * 9 8 6 35 35 H 1.08998 * 109.47006 * 59.99666 * 9 8 6 36 36 H 0.97005 * 119.99213 * 180.02562 * 13 12 10 37 37 H 1.08003 * 119.99321 * 359.97438 * 19 18 6 38 38 H 1.08002 * 120.00776 * 180.02562 * 20 19 18 39 39 H 1.08000 * 120.00661 * 179.71600 * 23 21 20 40 40 H 1.07997 * 119.99445 * 180.32231 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4443 0.1258 7 1 3.9282 2.4719 0.1253 8 7 3.9534 0.7876 1.3810 9 6 3.9228 1.7357 2.5026 10 6 4.3269 1.0276 3.7702 11 1 4.5806 -0.0218 3.7450 12 6 4.3716 1.7194 4.9620 13 7 4.0621 2.9973 4.9925 14 14 4.8731 0.8419 6.5329 15 1 6.3446 0.9404 6.7068 16 1 4.1942 1.4752 7.6919 17 1 4.4791 -0.5874 6.4489 18 6 4.1657 0.6989 -1.0380 19 6 4.6815 1.3975 -2.1138 20 6 5.2332 0.7145 -3.1813 21 6 5.2687 -0.6686 -3.1733 22 17 5.9621 -1.5271 -4.5134 23 6 4.7467 -1.3672 -2.0994 24 6 4.2011 -0.6830 -1.0295 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0699 1.5874 -2.1492 31 1 0.5490 2.1252 -1.3971 32 1 1.9990 3.1540 -1.3076 33 1 3.3670 -0.0121 1.5674 34 1 4.6166 2.5530 2.3065 35 1 2.9144 2.1341 2.6142 36 1 4.0939 3.4840 5.8310 37 1 4.6533 2.4771 -2.1201 38 1 5.6364 1.2603 -4.0214 39 1 4.7700 -2.4470 -2.0947 40 1 3.7983 -1.2282 -0.1887 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411476610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:41 Heat of formation + Delta-G solvation = -16.987976 kcal Electronic energy + Delta-G solvation = -20015.682662 eV Core-core repulsion = 17047.580779 eV Total energy + Delta-G solvation = -2968.101882 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.00343 -38.60936 -37.17500 -35.70468 -34.13250 -32.31232 -31.85842 -30.31019 -28.75892 -26.07480 -24.97162 -23.91529 -23.14207 -22.37319 -20.36372 -18.73240 -17.80109 -16.89205 -16.52321 -16.42362 -16.23159 -15.83657 -15.14374 -14.80635 -14.50818 -14.35347 -14.18191 -14.14631 -13.91378 -13.34720 -13.25629 -12.90819 -12.86123 -12.72459 -12.51156 -12.37153 -12.31234 -12.25101 -11.94402 -11.73863 -11.61082 -11.46433 -11.29836 -11.19812 -10.64915 -9.87217 -9.42222 -9.02701 -8.21364 -6.31862 0.26730 0.43542 1.22065 1.41385 1.42755 1.53617 2.40215 2.73673 3.12342 3.53630 3.86931 3.90293 3.92292 4.03162 4.06282 4.18625 4.46199 4.49970 4.57907 4.66557 4.70693 4.73177 4.82191 4.86474 5.07924 5.09473 5.12551 5.13344 5.20061 5.20975 5.29365 5.33106 5.37205 5.49043 5.53792 5.61330 5.73969 5.92301 6.04782 6.47817 6.74445 6.91469 7.38982 8.89846 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.004352 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.080294 B = 6431.661212 C = 7217.192742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.112 4.112 4 H 0.047 0.953 5 C -0.137 4.137 6 C 0.125 3.875 7 H 0.064 0.936 8 N -0.680 5.680 9 C 0.214 3.786 10 C -0.533 4.533 11 H 0.063 0.937 12 C 0.004 3.996 13 N -0.933 5.933 14 Si 0.968 3.032 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.263 1.263 18 C -0.051 4.051 19 C -0.110 4.110 20 C -0.110 4.110 21 C -0.049 4.049 22 Cl -0.075 7.075 23 C -0.115 4.115 24 C -0.093 4.093 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.336 0.664 34 H -0.004 1.004 35 H -0.035 1.035 36 H 0.264 0.736 37 H 0.138 0.862 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 -6.674 -17.770 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.132 4.132 4 H 0.066 0.934 5 C -0.195 4.195 6 C 0.014 3.986 7 H 0.082 0.918 8 N -0.311 5.311 9 C 0.086 3.914 10 C -0.572 4.572 11 H 0.081 0.919 12 C -0.194 4.194 13 N -0.573 5.573 14 Si 0.793 3.207 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.187 1.187 18 C -0.052 4.052 19 C -0.128 4.128 20 C -0.129 4.129 21 C -0.075 4.075 22 Cl -0.046 7.046 23 C -0.133 4.133 24 C -0.112 4.112 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.157 0.843 34 H 0.014 0.986 35 H -0.017 1.017 36 H 0.073 0.927 37 H 0.156 0.844 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.388 -6.536 -17.863 19.170 hybrid contribution -0.547 0.170 1.256 1.380 sum -2.935 -6.366 -16.607 18.026 Atomic orbital electron populations 1.21776 0.94890 1.02104 1.01706 1.21679 0.96763 0.95468 1.01857 1.21687 0.94936 0.97565 0.98975 0.93431 1.21796 1.01730 0.99976 0.95960 1.20536 0.93057 0.96518 0.88474 0.91821 1.60720 1.58056 1.10316 1.02012 1.19155 0.92845 0.91090 0.88323 1.21534 1.45554 0.96996 0.93066 0.91891 1.25885 0.95213 0.95579 1.02769 1.70087 1.49857 1.09560 1.27811 0.85397 0.78323 0.78870 0.78104 1.20079 1.20769 1.18701 1.19869 0.96809 0.94132 0.94404 1.21121 0.98124 1.00709 0.92885 1.21145 1.00061 0.92026 0.99653 1.20982 1.02594 0.92843 0.91113 1.98350 1.83336 1.77322 1.45622 1.21175 0.98638 1.01034 0.92458 1.21011 0.98726 0.93761 0.97653 0.91554 0.91738 0.93988 0.90405 0.93098 0.91731 0.91587 0.92888 0.84313 0.98618 1.01707 0.92707 0.84381 0.83384 0.83827 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.67 71.98 0.70 -2.62 16 2 C -0.12 -3.11 3.98 30.59 0.12 -2.98 16 3 C -0.11 -3.27 2.29 -10.79 -0.02 -3.30 16 4 H 0.05 1.67 7.45 -2.39 -0.02 1.65 16 5 C -0.14 -3.21 8.54 71.98 0.61 -2.60 16 6 C 0.12 4.19 2.15 44.17 0.09 4.28 16 7 H 0.06 2.35 7.66 -2.39 -0.02 2.33 16 8 N -0.68 -28.16 5.69 -499.49 -2.84 -31.00 16 9 C 0.21 11.24 5.24 85.56 0.45 11.69 16 10 C -0.53 -30.12 9.32 25.60 0.24 -29.88 16 11 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 12 C 0.00 0.22 5.46 84.65 0.46 0.68 16 13 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 14 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 15 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 C -0.05 -1.45 3.80 -19.86 -0.08 -1.53 16 19 C -0.11 -2.70 8.70 22.27 0.19 -2.50 16 20 C -0.11 -2.43 9.83 22.29 0.22 -2.21 16 21 C -0.05 -1.11 6.32 22.32 0.14 -0.97 16 22 Cl -0.08 -1.53 28.96 -2.72 -0.08 -1.61 16 23 C -0.11 -2.69 9.83 22.29 0.22 -2.47 16 24 C -0.09 -2.48 7.17 22.27 0.16 -2.32 16 25 H 0.07 1.31 6.56 -2.39 -0.02 1.29 16 26 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 1.84 6.02 -2.39 -0.01 1.83 16 29 H 0.05 1.46 5.92 -2.39 -0.01 1.45 16 30 H 0.06 1.41 6.64 -2.39 -0.02 1.40 16 31 H 0.07 1.38 6.56 -2.39 -0.02 1.36 16 32 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.34 13.20 5.54 -89.69 -0.50 12.70 16 34 H 0.00 -0.25 8.06 -2.39 -0.02 -0.27 16 35 H -0.03 -1.96 7.44 -2.39 -0.02 -1.97 16 36 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 37 H 0.14 3.02 8.04 -2.91 -0.02 3.00 16 38 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.13 3.47 6.36 -2.91 -0.02 3.45 16 Total: -1.00 -61.87 330.01 3.43 -58.44 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.53 Total: 20.53 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 3.51 Total: -36.74 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -2.56 Total: -86.80 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -61.87 3.43 -58.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411476610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.448 kcal (2) G-P(sol) polarization free energy of solvation -61.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds