Wall clock time and date at job start Tue Mar 31 2020 05:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47610 * 2 1 4 4 C 1.50706 * 109.46889 * 239.99886 * 2 1 3 5 5 H 1.08000 * 119.99727 * 239.99912 * 4 2 1 6 6 C 1.37875 * 119.99845 * 60.00539 * 4 2 1 7 7 N 1.31515 * 119.99878 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99897 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47330 * 89.99864 * 8 6 4 10 10 H 1.48505 * 109.47060 * 209.99975 * 8 6 4 11 11 H 1.48498 * 109.47225 * 329.99342 * 8 6 4 12 12 C 1.52998 * 109.47188 * 120.00351 * 2 1 3 13 13 N 1.46500 * 109.47023 * 299.99913 * 12 2 1 14 14 C 1.34775 * 120.00173 * 180.02562 * 13 12 2 15 15 O 1.21947 * 119.99700 * 359.97438 * 14 13 12 16 16 N 1.33191 * 120.00142 * 179.97438 * 14 13 12 17 17 C 1.34396 * 120.00164 * 236.34446 * 16 14 13 18 18 C 1.41265 * 120.67271 * 187.62289 * 17 16 14 19 19 C 1.35271 * 119.29101 * 180.02562 * 18 17 16 20 20 N 1.35468 * 120.73436 * 0.02562 * 19 18 17 21 21 H 0.97000 * 119.26984 * 180.02562 * 20 19 18 22 22 C 1.35658 * 121.45142 * 359.97390 * 20 19 18 23 23 C 1.35400 * 120.64306 * 359.76068 * 22 20 19 24 24 F 1.35104 * 120.39179 * 180.28261 * 23 22 20 25 25 H 1.09002 * 109.47105 * 300.00272 * 1 2 3 26 26 H 1.09002 * 109.47101 * 59.99735 * 1 2 3 27 27 H 1.08993 * 109.47461 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47349 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47105 * 300.00263 * 3 2 1 30 30 H 1.09001 * 109.46817 * 60.00191 * 3 2 1 31 31 H 0.97010 * 119.99854 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47680 * 179.97438 * 12 2 1 33 33 H 1.09006 * 109.47040 * 59.99616 * 12 2 1 34 34 H 0.96997 * 120.00121 * 359.97438 * 13 12 2 35 35 H 1.08001 * 120.35136 * 359.97438 * 18 17 16 36 36 H 1.08003 * 119.62897 * 180.02562 * 19 18 17 37 37 H 1.07995 * 119.68209 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3212 -1.1204 -4.0080 9 1 1.3425 -2.1616 -4.4119 10 1 2.4865 -0.1414 -5.1123 11 1 3.6292 -1.7584 -3.7123 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5788 -1.4824 3.7813 16 7 1.4341 0.1372 4.7570 17 6 2.3056 0.5835 5.6777 18 6 1.8492 1.1067 6.9079 19 6 2.7509 1.5486 7.8144 20 7 4.0790 1.4941 7.5530 21 1 4.7069 1.8165 8.2184 22 6 4.5501 0.9977 6.3817 23 6 3.6987 0.5348 5.4361 24 9 4.1737 0.0363 4.2738 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 0.7082 1.1610 -3.4844 32 1 3.1300 -0.7218 1.2490 33 1 1.6766 -1.7490 1.2491 34 1 0.9943 0.7581 2.3564 35 1 0.7917 1.1541 7.1221 36 1 2.4080 1.9493 8.7569 37 1 5.6148 0.9674 6.2035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459470049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:17 Heat of formation + Delta-G solvation = -10.218674 kcal Electronic energy + Delta-G solvation = -22097.271692 eV Core-core repulsion = 18597.586630 eV Total energy + Delta-G solvation = -3499.685062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.70015 -40.73449 -39.03328 -36.37139 -34.78605 -32.94170 -31.73922 -30.96331 -30.14866 -25.60482 -25.56340 -25.01371 -23.76595 -23.45026 -20.13845 -19.48578 -18.59058 -18.01537 -17.35141 -16.52321 -15.88992 -15.72417 -15.11806 -14.84680 -14.59080 -14.45497 -14.06727 -13.82492 -13.47987 -12.98508 -12.82990 -12.47358 -12.28395 -12.00087 -11.43477 -11.21623 -11.04101 -10.74780 -10.58922 -10.25818 -10.14466 -10.01518 -9.75571 -9.46121 -9.19190 -8.82745 -8.62769 -8.29304 -8.00118 -7.54615 -5.90264 -3.99755 0.65962 0.92407 2.43398 3.01678 3.36006 3.42112 3.46601 3.60349 3.99777 4.13866 4.18511 4.44601 4.53809 4.74503 5.08700 5.35902 5.39355 5.77130 5.86654 6.19383 6.34582 6.46249 6.54875 6.66881 6.72536 6.99995 7.01955 7.14874 7.19830 7.35256 7.55700 7.71269 7.81366 7.89457 8.15564 8.26988 8.52137 8.56165 9.00244 9.35495 9.65026 11.11138 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.037220 B = 0.003807 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.095490 B = 7353.261089 C = 7543.425767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.128 4.128 4 C -0.502 4.502 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.144 3.856 13 N -0.710 5.710 14 C 0.655 3.345 15 O -0.594 6.594 16 N -0.604 5.604 17 C 0.284 3.716 18 C -0.187 4.187 19 C 0.123 3.877 20 N -0.579 5.579 21 H 0.425 0.575 22 C 0.084 3.916 23 C -0.017 4.017 24 F -0.102 7.102 25 H 0.007 0.993 26 H 0.084 0.916 27 H 0.026 0.974 28 H 0.025 0.975 29 H 0.084 0.916 30 H 0.006 0.994 31 H 0.258 0.742 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.396 0.604 35 H 0.160 0.840 36 H 0.176 0.824 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.084 7.240 23.877 25.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.541 4.541 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.021 3.979 13 N -0.363 5.363 14 C 0.355 3.645 15 O -0.474 6.474 16 N -0.339 5.339 17 C 0.118 3.882 18 C -0.214 4.214 19 C -0.008 4.008 20 N -0.185 5.185 21 H 0.262 0.738 22 C -0.047 4.047 23 C -0.046 4.046 24 F -0.080 7.080 25 H 0.026 0.974 26 H 0.103 0.897 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.103 0.897 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.231 0.769 35 H 0.178 0.822 36 H 0.193 0.807 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.590 6.451 23.326 24.839 hybrid contribution 1.004 -0.239 -1.083 1.496 sum 6.594 6.212 22.243 24.017 Atomic orbital electron populations 1.21808 0.97755 0.99137 1.00035 1.18360 0.92845 0.92753 0.90578 1.21794 0.98406 0.98433 0.99932 1.21015 1.31200 1.11939 0.89938 0.92479 1.24883 0.94983 0.94955 0.98769 1.69826 1.36880 1.22844 1.23017 0.86576 0.79304 0.79365 0.82640 1.20754 1.21333 1.19939 1.21584 0.97736 0.95549 0.83050 1.45737 1.54055 1.31621 1.04854 1.17275 0.78194 0.85425 0.83641 1.90943 1.39399 1.29535 1.87553 1.68761 1.34756 1.24337 1.06030 1.19135 0.87082 0.89961 0.92016 1.20496 1.01180 1.07533 0.92219 1.21845 0.82112 0.96625 1.00197 1.40704 1.07445 1.54224 1.16121 0.73829 1.21513 1.00000 0.97117 0.86033 1.17906 0.93013 1.07185 0.86470 1.91683 1.87898 1.84792 1.43668 0.97372 0.89705 0.95529 0.95601 0.89708 0.97545 0.93138 0.93085 0.93185 0.76905 0.82212 0.80704 0.80802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.08 37.16 0.30 -2.98 16 2 C 0.06 1.43 0.50 -155.66 -0.08 1.35 16 3 C -0.13 -3.19 8.08 37.16 0.30 -2.89 16 4 C -0.50 -14.17 8.01 -34.44 -0.28 -14.45 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 6 C 0.06 1.81 5.15 -17.82 -0.09 1.71 16 7 N -0.89 -24.94 9.35 55.43 0.52 -24.42 16 8 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.14 3.61 4.50 -4.04 -0.02 3.59 16 13 N -0.71 -16.33 4.96 -65.57 -0.33 -16.65 16 14 C 0.65 15.25 6.39 -88.32 -0.56 14.68 16 15 O -0.59 -15.56 14.80 4.97 0.07 -15.48 16 16 N -0.60 -11.96 10.53 -14.57 -0.15 -12.12 16 17 C 0.28 4.29 6.55 -84.36 -0.55 3.73 16 18 C -0.19 -1.68 10.00 -39.49 -0.39 -2.08 16 19 C 0.12 0.47 11.17 -17.00 -0.19 0.28 16 20 N -0.58 -1.89 5.24 -12.99 -0.07 -1.95 16 21 H 0.43 -0.51 8.90 -40.82 -0.36 -0.87 16 22 C 0.08 0.63 11.15 -16.87 -0.19 0.44 16 23 C -0.02 -0.23 6.96 -39.36 -0.27 -0.51 16 24 F -0.10 -1.96 13.37 2.25 0.03 -1.93 16 25 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 26 H 0.08 2.30 6.07 -51.93 -0.32 1.98 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 2.28 6.07 -51.93 -0.32 1.96 16 30 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.05 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.40 8.63 6.26 -40.82 -0.26 8.37 16 35 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.18 -0.17 8.06 -52.48 -0.42 -0.59 16 37 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 309.47 15.07 4.66 4.66 Total: -1.00 -39.03 309.47 -6.77 -45.81 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -4.46 Total: 2.45 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -2.03 Total: 2.90 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.03 Total: -55.14 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.07 Total: -15.48 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.03 Total: -1.93 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -39.03 -6.77 -45.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459470049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.587 kcal (2) G-P(sol) polarization free energy of solvation -39.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds