Wall clock time and date at job start Tue Mar 31 2020 05:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46831 * 2 1 4 4 N 1.46894 * 109.47143 * 120.00054 * 2 1 3 5 5 C 1.46894 * 111.00442 * 275.00163 * 4 2 1 6 6 C 1.52996 * 109.47462 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47083 * 300.00127 * 6 5 4 8 8 C 1.53000 * 109.46966 * 59.99966 * 6 5 4 9 9 C 1.50697 * 109.47388 * 179.97438 * 6 5 4 10 10 H 1.08004 * 120.00089 * 0.02562 * 9 6 5 11 11 C 1.37878 * 120.00370 * 180.02562 * 9 6 5 12 12 N 1.31515 * 119.99922 * 359.97438 * 11 9 6 13 13 Si 1.86795 * 120.00251 * 180.02562 * 11 9 6 14 14 H 1.48501 * 109.47036 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47195 * 119.99832 * 13 11 9 16 16 H 1.48501 * 109.47178 * 240.00077 * 13 11 9 17 17 C 1.50696 * 109.46922 * 240.00289 * 2 1 3 18 18 C 1.38247 * 119.98658 * 100.00234 * 17 2 1 19 19 C 1.38216 * 120.01497 * 179.97438 * 18 17 2 20 20 C 1.38357 * 119.98603 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.01134 * 180.02562 * 20 19 18 22 22 C 1.38347 * 119.97107 * 0.28224 * 20 19 18 23 23 C 1.38218 * 119.98923 * 359.44450 * 22 20 19 24 24 H 1.09008 * 109.47036 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47157 * 299.99499 * 1 2 3 26 26 H 1.09001 * 109.47280 * 59.99804 * 1 2 3 27 27 H 1.00902 * 111.00177 * 38.96090 * 4 2 1 28 28 H 1.08996 * 109.47182 * 300.00166 * 5 4 2 29 29 H 1.08998 * 109.47006 * 59.99666 * 5 4 2 30 30 H 1.08997 * 109.47167 * 59.99645 * 7 6 5 31 31 H 1.09007 * 109.47161 * 180.02562 * 7 6 5 32 32 H 1.08998 * 109.47271 * 299.99838 * 7 6 5 33 33 H 1.08996 * 109.47054 * 60.00274 * 8 6 5 34 34 H 1.09007 * 109.46835 * 180.02562 * 8 6 5 35 35 H 1.09000 * 109.47019 * 299.99647 * 8 6 5 36 36 H 0.96994 * 120.00172 * 179.97438 * 12 11 9 37 37 H 1.08003 * 119.99321 * 359.97438 * 18 17 2 38 38 H 1.08002 * 120.00776 * 180.02562 * 19 18 17 39 39 H 1.08000 * 120.00661 * 179.71600 * 22 20 19 40 40 H 1.07997 * 119.99399 * 180.27944 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5962 -0.5330 3.5741 7 6 1.6473 -1.6894 3.8952 8 6 3.9936 -1.0851 3.2850 9 6 2.6612 0.4058 4.7511 10 1 2.3653 1.4380 4.6356 11 6 3.0986 -0.0529 5.9756 12 7 3.4585 -1.3100 6.1165 13 14 3.1784 1.1106 7.4347 14 1 2.7220 2.4605 7.0169 15 1 2.3003 0.6045 8.5201 16 1 4.5771 1.1919 7.9270 17 6 2.0323 -0.7103 -1.2305 18 6 2.4587 0.0199 -2.3242 19 6 2.9200 -0.6310 -3.4529 20 6 2.9544 -2.0137 -3.4882 21 17 3.5343 -2.8319 -4.9052 22 6 2.5216 -2.7440 -2.3958 23 6 2.0659 -2.0919 -1.2655 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.4496 -1.4980 1.4099 28 1 2.7588 1.0461 2.1183 29 1 1.0871 0.6162 2.5525 30 1 1.6007 -2.3684 3.0438 31 1 2.0131 -2.2274 4.7699 32 1 0.6519 -1.2962 4.1012 33 1 4.6695 -0.2613 3.0562 34 1 4.3594 -1.6237 4.1592 35 1 3.9469 -1.7641 2.4336 36 1 3.7665 -1.6327 6.9778 37 1 2.4313 1.0992 -2.2967 38 1 3.2534 -0.0604 -4.3071 39 1 2.5440 -3.8234 -2.4244 40 1 1.7322 -2.6618 -0.4110 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459734564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:16 Heat of formation + Delta-G solvation = 4.729394 kcal Electronic energy + Delta-G solvation = -19763.487145 eV Core-core repulsion = 16796.326998 eV Total energy + Delta-G solvation = -2967.160147 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.59570 -37.32766 -36.43776 -34.75989 -31.79163 -31.07880 -29.95522 -28.34043 -25.58621 -25.24832 -24.32856 -23.31113 -22.49097 -20.38738 -18.53294 -17.21995 -16.03399 -15.65733 -15.33728 -14.83733 -14.41627 -14.05080 -13.92686 -13.55608 -13.47631 -12.88204 -12.76615 -12.67704 -12.22272 -11.90855 -11.78210 -11.45610 -11.24602 -11.15536 -10.98513 -10.93063 -10.77906 -10.63398 -10.55321 -10.20313 -10.06634 -9.41097 -9.12237 -9.03163 -8.64758 -8.52559 -8.30530 -7.75361 -5.92564 -4.02978 1.16021 1.30717 2.07966 3.29315 3.37928 3.41042 3.63458 4.41474 4.60090 4.81212 4.86004 4.95903 5.24640 5.32295 5.33139 5.42074 5.44589 5.67530 5.78679 5.86115 5.97358 6.12842 6.20267 6.25138 6.31460 6.44076 6.61321 6.69713 6.81105 6.87443 7.05088 7.14936 7.37083 7.45830 7.69344 7.74533 7.81737 7.91321 8.19618 8.33295 8.54357 8.98697 9.62248 11.07937 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033468 B = 0.003342 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.428428 B = 8376.307468 C = 8664.886840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.115 3.885 3 H 0.084 0.916 4 N -0.678 5.678 5 C 0.076 3.924 6 C 0.069 3.931 7 C -0.132 4.132 8 C -0.119 4.119 9 C -0.507 4.507 10 H 0.052 0.948 11 C 0.065 3.935 12 N -0.884 5.884 13 Si 0.888 3.112 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.285 1.285 17 C -0.050 4.050 18 C -0.107 4.107 19 C -0.112 4.112 20 C -0.043 4.043 21 Cl -0.083 7.083 22 C -0.111 4.111 23 C -0.084 4.084 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.338 0.662 28 H 0.056 0.944 29 H 0.015 0.985 30 H 0.010 0.990 31 H 0.083 0.917 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.073 0.927 35 H 0.020 0.980 36 H 0.257 0.743 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 -0.888 -17.474 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.005 3.995 3 H 0.102 0.898 4 N -0.309 5.309 5 C -0.052 4.052 6 C 0.069 3.931 7 C -0.190 4.190 8 C -0.177 4.177 9 C -0.545 4.545 10 H 0.070 0.930 11 C -0.136 4.136 12 N -0.523 5.523 13 Si 0.716 3.284 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.050 4.050 18 C -0.126 4.126 19 C -0.131 4.131 20 C -0.070 4.070 21 Cl -0.055 7.055 22 C -0.130 4.130 23 C -0.103 4.103 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.158 0.842 28 H 0.075 0.925 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.102 0.898 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.092 0.908 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.060 -0.997 -17.598 17.890 hybrid contribution -0.785 0.678 0.925 1.389 sum -3.844 -0.319 -16.673 17.114 Atomic orbital electron populations 1.22480 0.96584 1.02242 1.02184 1.20496 0.92389 0.97539 0.89098 0.89764 1.60718 1.56258 1.10156 1.03801 1.22187 0.97916 0.94791 0.90316 1.18089 0.92546 0.92637 0.89870 1.21834 0.97812 0.98759 1.00566 1.21636 0.97715 0.98640 0.99660 1.21146 1.43436 0.95901 0.94059 0.92964 1.24884 0.95219 0.94994 0.98483 1.69840 1.44601 1.13967 1.23880 0.86611 0.77589 0.81270 0.82921 1.19960 1.21182 1.21113 1.20051 0.96407 0.93831 0.94751 1.20974 0.99088 1.00039 0.92514 1.20943 1.00868 0.92195 0.99105 1.20872 1.03922 0.92791 0.89382 1.98351 1.87596 1.79463 1.40062 1.21045 0.99514 1.00234 0.92214 1.20943 0.98282 0.94148 0.96886 0.92428 0.91905 0.92459 0.84187 0.92529 0.96650 0.97132 0.89824 0.96227 0.96345 0.90789 0.96116 0.93245 0.85377 0.85361 0.85247 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 9.14 37.16 0.34 -1.76 16 2 C 0.12 1.56 2.79 -68.87 -0.19 1.37 16 3 H 0.08 1.16 7.66 -51.93 -0.40 0.76 16 4 N -0.68 -11.24 4.92 -107.96 -0.53 -11.77 16 5 C 0.08 1.51 4.38 -3.83 -0.02 1.49 16 6 C 0.07 1.62 0.57 -155.66 -0.09 1.53 16 7 C -0.13 -3.02 7.92 37.16 0.29 -2.72 16 8 C -0.12 -2.86 8.09 37.16 0.30 -2.56 16 9 C -0.51 -13.41 8.01 -34.44 -0.28 -13.69 16 10 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 11 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 12 N -0.88 -24.22 9.35 55.43 0.52 -23.70 16 13 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C -0.05 -0.63 4.96 -104.62 -0.52 -1.15 16 18 C -0.11 -1.23 9.67 -39.59 -0.38 -1.62 16 19 C -0.11 -1.24 9.83 -39.55 -0.39 -1.63 16 20 C -0.04 -0.50 6.32 -39.50 -0.25 -0.75 16 21 Cl -0.08 -0.90 28.96 -51.86 -1.50 -2.40 16 22 C -0.11 -1.31 9.83 -39.55 -0.39 -1.70 16 23 C -0.08 -1.06 9.32 -39.59 -0.37 -1.43 16 24 H 0.06 0.67 8.13 -51.92 -0.42 0.24 16 25 H 0.06 0.80 7.45 -51.93 -0.39 0.41 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.34 5.51 5.86 -39.29 -0.23 5.28 16 28 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 29 H 0.02 0.30 7.44 -51.93 -0.39 -0.08 16 30 H 0.01 0.20 6.57 -51.93 -0.34 -0.14 16 31 H 0.08 2.15 6.07 -51.92 -0.32 1.83 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 1.96 6.07 -51.92 -0.32 1.65 16 35 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 36 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.13 1.23 8.04 -52.48 -0.42 0.81 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.13 1.62 7.25 -52.49 -0.38 1.24 16 LS Contribution 332.85 15.07 5.02 5.02 Total: -1.00 -26.91 332.85 -9.61 -36.52 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.07 Total: 3.41 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -2.03 Total: -22.97 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.01 Total: -35.47 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.91 -9.61 -36.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459734564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.254 kcal (2) G-P(sol) polarization free energy of solvation -26.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds