Wall clock time and date at job start Tue Mar 31 2020 05:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47489 * 6.36774 * 3 2 1 5 5 C 1.36932 * 120.00224 * 264.40609 * 4 3 2 6 6 H 1.08001 * 120.00256 * 196.87700 * 5 4 3 7 7 C 1.38813 * 120.00225 * 16.88106 * 5 4 3 8 8 N 1.31623 * 119.99726 * 22.37537 * 7 5 4 9 9 Si 1.86796 * 120.00354 * 202.38106 * 7 5 4 10 10 H 1.48503 * 109.47419 * 89.99571 * 9 7 5 11 11 H 1.48505 * 109.47127 * 209.99779 * 9 7 5 12 12 H 1.48503 * 109.47153 * 329.99658 * 9 7 5 13 13 C 1.46506 * 119.99936 * 84.68321 * 4 3 2 14 14 C 1.50704 * 109.46864 * 269.72416 * 13 4 3 15 15 C 1.38274 * 119.93628 * 269.72763 * 14 13 4 16 16 C 1.38127 * 120.06533 * 179.72364 * 15 14 13 17 17 C 1.38820 * 119.93081 * 0.57325 * 16 15 14 18 18 N 1.40234 * 120.06381 * 179.68324 * 17 16 15 19 19 C 1.37101 * 126.47230 * 359.72861 * 18 17 16 20 20 C 1.34656 * 106.83273 * 179.84551 * 19 18 17 21 21 N 1.34124 * 108.19780 * 0.42328 * 20 19 18 22 22 C 1.30518 * 109.34833 * 359.73488 * 21 20 19 23 23 C 1.38821 * 119.87330 * 359.70008 * 17 16 15 24 24 C 1.38123 * 119.93237 * 359.97438 * 23 17 16 25 25 H 4.40645 * 5.51382 * 180.02562 * 4 1 2 26 26 H 1.09004 * 109.46817 * 246.36881 * 3 2 1 27 27 H 1.09000 * 109.46958 * 126.37276 * 3 2 1 28 28 H 0.96995 * 119.99902 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.47242 * 29.72237 * 13 4 3 30 30 H 1.08992 * 109.47052 * 149.72732 * 13 4 3 31 31 H 1.08005 * 119.96662 * 359.97438 * 15 14 13 32 32 H 1.08002 * 120.03458 * 180.29256 * 16 15 14 33 33 H 1.07998 * 126.58435 * 359.97438 * 19 18 17 34 34 H 1.08007 * 125.89985 * 180.11975 * 20 19 18 35 35 H 1.08001 * 125.71646 * 180.02562 * 22 21 20 36 36 H 1.07998 * 120.03088 * 180.02562 * 23 17 16 37 37 H 1.07999 * 119.96268 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3717 -0.1532 5 6 3.4726 -2.1057 0.9524 6 1 4.0780 -2.9938 0.8468 7 6 3.0366 -1.7085 2.2090 8 7 1.9797 -0.9324 2.3238 9 14 3.9497 -2.2751 3.7368 10 1 5.0142 -1.2945 4.0696 11 1 2.9985 -2.3775 4.8726 12 1 4.5625 -3.6037 3.4831 13 6 3.2686 -1.9569 -1.4897 14 6 1.9831 -2.6473 -1.8665 15 6 1.8010 -3.9828 -1.5580 16 6 0.6216 -4.6167 -1.8971 17 6 -0.3767 -3.9147 -2.5589 18 7 -1.5725 -4.5574 -2.9104 19 6 -1.8936 -5.8687 -2.6720 20 6 -3.1299 -6.0640 -3.1685 21 7 -3.5530 -4.9097 -3.7049 22 6 -2.6291 -3.9998 -3.5567 23 6 -0.1887 -2.5755 -2.8723 24 6 0.9902 -1.9452 -2.5247 25 1 -1.0498 -0.0004 -0.0002 26 1 3.0091 0.4128 0.9415 27 1 3.0090 0.6103 -0.8275 28 1 1.6752 -0.6545 3.2018 29 1 3.4830 -1.1689 -2.2115 30 1 4.0833 -2.6809 -1.4895 31 1 2.5801 -4.5297 -1.0478 32 1 0.4779 -5.6586 -1.6517 33 1 -1.2747 -6.6035 -2.1786 34 1 -3.6832 -6.9912 -3.1439 35 1 -2.6941 -2.9750 -3.8914 36 1 -0.9637 -2.0269 -3.3868 37 1 1.1371 -0.9034 -2.7687 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491555317.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:24 Heat of formation + Delta-G solvation = 179.847492 kcal Electronic energy + Delta-G solvation = -21050.698865 eV Core-core repulsion = 17990.024915 eV Total energy + Delta-G solvation = -3060.673950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.15941 -38.94599 -36.22584 -33.92515 -31.68585 -31.53618 -30.90038 -29.53784 -29.05254 -26.27319 -25.63392 -23.00870 -22.86562 -21.36791 -20.41651 -20.14873 -18.37860 -17.53154 -16.48426 -15.56558 -15.32579 -15.08318 -14.83848 -14.56986 -14.06760 -13.84735 -13.56247 -13.41310 -13.31906 -13.01387 -12.76644 -12.45054 -11.64235 -11.54388 -11.27575 -11.07206 -10.89319 -10.56985 -10.39250 -10.32103 -10.06588 -10.01452 -9.02657 -8.92388 -8.65320 -8.59590 -8.49798 -7.83499 -7.16807 -5.92567 -3.31555 1.16531 1.70470 2.49961 2.84261 3.16590 3.28984 3.36461 3.38137 4.02558 4.22621 4.32458 4.45112 4.66583 4.84786 4.93058 5.11887 5.20673 5.37760 5.43804 5.48214 5.60583 5.73120 5.77604 5.78846 5.97575 6.02822 6.15276 6.35484 6.43013 6.56958 6.61556 6.69174 6.82139 7.11471 7.11725 7.12865 7.35188 7.46083 7.62007 8.04353 8.13017 8.95887 9.14255 9.61348 10.06530 11.10059 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021367 B = 0.004706 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.133127 B = 5947.890334 C = 6240.137064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.096 4.096 3 C 0.266 3.734 4 N -0.573 5.573 5 C -0.266 4.266 6 H 0.078 0.922 7 C 0.006 3.994 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.279 1.279 13 C 0.175 3.825 14 C -0.079 4.079 15 C -0.079 4.079 16 C -0.130 4.130 17 C 0.099 3.901 18 N -0.397 5.397 19 C -0.053 4.053 20 C -0.033 4.033 21 N -0.494 5.494 22 C 0.183 3.817 23 C -0.130 4.130 24 C -0.079 4.079 25 H 0.186 0.814 26 H 0.097 0.903 27 H 0.038 0.962 28 H 0.256 0.744 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.174 0.826 34 H 0.171 0.829 35 H 0.205 0.795 36 H 0.120 0.880 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.551 -3.795 -9.865 10.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 C -0.099 4.099 3 C 0.141 3.859 4 N -0.291 5.291 5 C -0.395 4.395 6 H 0.095 0.905 7 C -0.194 4.194 8 N -0.523 5.523 9 Si 0.732 3.268 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.204 1.204 13 C 0.048 3.952 14 C -0.083 4.083 15 C -0.098 4.098 16 C -0.150 4.150 17 C 0.007 3.993 18 N -0.073 5.073 19 C -0.185 4.185 20 C -0.180 4.180 21 N -0.211 5.211 22 C -0.098 4.098 23 C -0.149 4.149 24 C -0.098 4.098 25 H 0.203 0.797 26 H 0.115 0.885 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.138 0.862 33 H 0.191 0.809 34 H 0.188 0.812 35 H 0.221 0.779 36 H 0.138 0.862 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.233 -3.558 -10.016 10.861 hybrid contribution 0.436 -0.605 1.647 1.808 sum -1.798 -4.163 -8.370 9.519 Atomic orbital electron populations 1.24091 0.95225 1.04399 1.07636 1.24133 0.95115 0.96448 0.94220 1.17883 0.82994 0.85207 0.99831 1.44445 1.73599 1.10146 1.00902 1.19248 1.25972 1.09926 0.84323 0.90467 1.24958 0.96215 1.00100 0.98134 1.70140 1.20879 1.38365 1.22902 0.86299 0.79265 0.78427 0.82845 1.21236 1.21882 1.20437 1.20100 0.91647 0.95722 0.87707 1.21222 1.00109 0.93397 0.93598 1.20849 0.96404 0.94705 0.97867 1.20723 0.93598 0.99766 1.00875 1.17682 0.85483 0.92931 1.03176 1.43205 1.13157 1.09503 1.41483 1.22745 1.00003 0.86439 1.09317 1.22266 0.94308 0.97724 1.03714 1.70283 1.28443 1.00443 1.21966 1.25148 0.83697 1.00561 1.00435 1.20624 0.98911 0.92060 1.03333 1.20780 0.92367 0.99257 0.97404 0.79668 0.88509 0.94382 0.93348 0.92815 0.92020 0.85522 0.86239 0.80875 0.81226 0.77850 0.86185 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.44 19.03 29.55 0.56 -5.87 16 2 C -0.10 -2.19 10.31 -37.12 -0.38 -2.57 16 3 C 0.27 5.82 5.45 -6.83 -0.04 5.78 16 4 N -0.57 -12.69 2.49 -177.95 -0.44 -13.13 16 5 C -0.27 -6.56 9.66 -15.06 -0.15 -6.71 16 6 H 0.08 1.86 7.90 -52.49 -0.41 1.45 16 7 C 0.01 0.16 4.85 -17.43 -0.08 0.08 16 8 N -0.88 -23.93 9.50 55.49 0.53 -23.40 16 9 Si 0.90 20.53 29.61 -169.99 -5.03 15.50 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.17 3.14 5.82 -5.19 -0.03 3.11 16 14 C -0.08 -1.39 5.24 -104.59 -0.55 -1.94 16 15 C -0.08 -1.34 9.69 -39.61 -0.38 -1.73 16 16 C -0.13 -2.06 9.47 -39.41 -0.37 -2.43 16 17 C 0.10 1.57 6.63 -83.58 -0.55 1.01 16 18 N -0.40 -5.93 2.99 -62.10 -0.19 -6.11 16 19 C -0.05 -0.72 10.86 -16.46 -0.18 -0.90 16 20 C -0.03 -0.45 11.85 -17.82 -0.21 -0.66 16 21 N -0.49 -7.64 11.24 -14.47 -0.16 -7.80 16 22 C 0.18 2.62 11.91 -89.64 -1.07 1.56 16 23 C -0.13 -1.98 9.47 -39.41 -0.37 -2.36 16 24 C -0.08 -1.29 8.41 -39.61 -0.33 -1.62 16 25 H 0.19 3.56 7.80 -54.10 -0.42 3.14 16 26 H 0.10 2.35 6.44 -51.93 -0.33 2.01 16 27 H 0.04 0.71 7.97 -51.93 -0.41 0.30 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.05 0.85 7.88 -51.93 -0.41 0.44 16 30 H 0.06 1.05 7.96 -51.93 -0.41 0.63 16 31 H 0.13 2.08 8.06 -52.48 -0.42 1.65 16 32 H 0.12 1.63 6.82 -52.49 -0.36 1.27 16 33 H 0.17 1.88 7.15 -52.49 -0.38 1.51 16 34 H 0.17 1.79 8.06 -52.48 -0.42 1.37 16 35 H 0.20 2.29 7.07 -52.49 -0.37 1.91 16 36 H 0.12 1.53 6.77 -52.49 -0.36 1.18 16 37 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 322.06 15.07 4.85 4.85 Total: -1.00 -29.96 322.06 -8.86 -38.82 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.27 Total: 6.53 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -4.14 Total: -15.25 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.26 Total: -50.45 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.96 -8.86 -38.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491555317.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.665 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds