Wall clock time and date at job start Tue Mar 31 2020 05:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47489 * 6.36774 * 3 2 1 5 5 C 1.36932 * 120.00224 * 264.40609 * 4 3 2 6 6 H 1.08001 * 120.00256 * 196.87700 * 5 4 3 7 7 C 1.38813 * 120.00225 * 16.88106 * 5 4 3 8 8 N 1.31623 * 119.99726 * 22.37537 * 7 5 4 9 9 Si 1.86796 * 120.00354 * 202.38106 * 7 5 4 10 10 H 1.48503 * 109.47419 * 89.99571 * 9 7 5 11 11 H 1.48505 * 109.47127 * 209.99779 * 9 7 5 12 12 H 1.48503 * 109.47153 * 329.99658 * 9 7 5 13 13 C 1.46506 * 119.99936 * 84.68321 * 4 3 2 14 14 C 1.50704 * 109.46864 * 269.72416 * 13 4 3 15 15 C 1.38274 * 119.93628 * 269.72763 * 14 13 4 16 16 C 1.38127 * 120.06533 * 179.72364 * 15 14 13 17 17 C 1.38820 * 119.93081 * 0.57325 * 16 15 14 18 18 N 1.40234 * 120.06381 * 179.68324 * 17 16 15 19 19 C 1.37101 * 126.47230 * 359.72861 * 18 17 16 20 20 C 1.34656 * 106.83273 * 179.84551 * 19 18 17 21 21 N 1.34124 * 108.19780 * 0.42328 * 20 19 18 22 22 C 1.30518 * 109.34833 * 359.73488 * 21 20 19 23 23 C 1.38821 * 119.87330 * 359.70008 * 17 16 15 24 24 C 1.38123 * 119.93237 * 359.97438 * 23 17 16 25 25 H 4.40645 * 5.51382 * 180.02562 * 4 1 2 26 26 H 1.09004 * 109.46817 * 246.36881 * 3 2 1 27 27 H 1.09000 * 109.46958 * 126.37276 * 3 2 1 28 28 H 0.96995 * 119.99902 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.47242 * 29.72237 * 13 4 3 30 30 H 1.08992 * 109.47052 * 149.72732 * 13 4 3 31 31 H 1.08005 * 119.96662 * 359.97438 * 15 14 13 32 32 H 1.08002 * 120.03458 * 180.29256 * 16 15 14 33 33 H 1.07998 * 126.58435 * 359.97438 * 19 18 17 34 34 H 1.08007 * 125.89985 * 180.11975 * 20 19 18 35 35 H 1.08001 * 125.71646 * 180.02562 * 22 21 20 36 36 H 1.07998 * 120.03088 * 180.02562 * 23 17 16 37 37 H 1.07999 * 119.96268 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3717 -0.1532 5 6 3.4726 -2.1057 0.9524 6 1 4.0780 -2.9938 0.8468 7 6 3.0366 -1.7085 2.2090 8 7 1.9797 -0.9324 2.3238 9 14 3.9497 -2.2751 3.7368 10 1 5.0142 -1.2945 4.0696 11 1 2.9985 -2.3775 4.8726 12 1 4.5625 -3.6037 3.4831 13 6 3.2686 -1.9569 -1.4897 14 6 1.9831 -2.6473 -1.8665 15 6 1.8010 -3.9828 -1.5580 16 6 0.6216 -4.6167 -1.8971 17 6 -0.3767 -3.9147 -2.5589 18 7 -1.5725 -4.5574 -2.9104 19 6 -1.8936 -5.8687 -2.6720 20 6 -3.1299 -6.0640 -3.1685 21 7 -3.5530 -4.9097 -3.7049 22 6 -2.6291 -3.9998 -3.5567 23 6 -0.1887 -2.5755 -2.8723 24 6 0.9902 -1.9452 -2.5247 25 1 -1.0498 -0.0004 -0.0002 26 1 3.0091 0.4128 0.9415 27 1 3.0090 0.6103 -0.8275 28 1 1.6752 -0.6545 3.2018 29 1 3.4830 -1.1689 -2.2115 30 1 4.0833 -2.6809 -1.4895 31 1 2.5801 -4.5297 -1.0478 32 1 0.4779 -5.6586 -1.6517 33 1 -1.2747 -6.6035 -2.1786 34 1 -3.6832 -6.9912 -3.1439 35 1 -2.6941 -2.9750 -3.8914 36 1 -0.9637 -2.0269 -3.3868 37 1 1.1371 -0.9034 -2.7687 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491555317.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:24 Heat of formation + Delta-G solvation = 167.053900 kcal Electronic energy + Delta-G solvation = -21051.253637 eV Core-core repulsion = 17990.024915 eV Total energy + Delta-G solvation = -3061.228722 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.24414 -40.20675 -37.82005 -35.20544 -33.45475 -33.09359 -32.13354 -30.84690 -30.23820 -27.96088 -27.15307 -24.33301 -24.14923 -22.78669 -21.52995 -21.37472 -19.51816 -19.26916 -18.19720 -17.09681 -16.45140 -16.35293 -16.26787 -15.78304 -15.58671 -15.32628 -14.93060 -14.68933 -14.62637 -14.30442 -14.02192 -13.74226 -13.36461 -13.16784 -12.75748 -12.64187 -12.52255 -12.16419 -11.98878 -11.76507 -11.51609 -11.15003 -10.72690 -10.69515 -10.25872 -9.88329 -9.66675 -9.12002 -8.90470 -7.82525 -5.21477 -0.02492 0.45992 1.36130 1.48128 1.52018 1.57316 1.73847 2.09915 2.39713 2.57565 2.65734 2.88407 3.31635 3.66970 3.74082 3.83215 3.95928 4.00270 4.12324 4.21425 4.25218 4.47325 4.51816 4.62975 4.74991 4.80321 4.95808 4.98073 5.06551 5.13305 5.34000 5.41343 5.49823 5.66908 5.72963 5.73998 5.82342 5.90832 6.29292 6.32099 6.97645 7.11321 7.44061 7.84141 8.25414 9.18440 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021367 B = 0.004706 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.133127 B = 5947.890334 C = 6240.137064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.115 4.115 3 C 0.266 3.734 4 N -0.587 5.587 5 C -0.259 4.259 6 H 0.079 0.921 7 C -0.043 4.043 8 N -0.911 5.911 9 Si 0.953 3.047 10 H -0.287 1.287 11 H -0.307 1.307 12 H -0.271 1.271 13 C 0.174 3.826 14 C -0.095 4.095 15 C -0.092 4.092 16 C -0.137 4.137 17 C 0.101 3.899 18 N -0.406 5.406 19 C -0.061 4.061 20 C -0.041 4.041 21 N -0.520 5.520 22 C 0.176 3.824 23 C -0.132 4.132 24 C -0.082 4.082 25 H 0.207 0.793 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.244 0.756 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.127 0.873 32 H 0.139 0.861 33 H 0.196 0.804 34 H 0.195 0.805 35 H 0.229 0.771 36 H 0.146 0.854 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.907 -4.534 -11.143 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.117 4.117 3 C 0.141 3.859 4 N -0.305 5.305 5 C -0.389 4.389 6 H 0.097 0.903 7 C -0.239 4.239 8 N -0.555 5.555 9 Si 0.783 3.217 10 H -0.213 1.213 11 H -0.235 1.235 12 H -0.196 1.196 13 C 0.048 3.952 14 C -0.099 4.099 15 C -0.111 4.111 16 C -0.156 4.156 17 C 0.009 3.991 18 N -0.084 5.084 19 C -0.192 4.192 20 C -0.187 4.187 21 N -0.238 5.238 22 C -0.104 4.104 23 C -0.151 4.151 24 C -0.101 4.101 25 H 0.223 0.777 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.145 0.855 32 H 0.156 0.844 33 H 0.213 0.787 34 H 0.212 0.788 35 H 0.245 0.755 36 H 0.163 0.837 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.582 -4.336 -11.340 12.412 hybrid contribution 0.494 -0.453 1.870 1.986 sum -2.089 -4.789 -9.471 10.816 Atomic orbital electron populations 1.24665 0.96016 1.03946 1.07144 1.24439 0.95709 0.96907 0.94678 1.17832 0.82884 0.85625 0.99543 1.44465 1.73987 1.10344 1.01722 1.19483 1.24858 1.09270 0.85284 0.90318 1.25481 0.97107 1.01197 1.00160 1.70288 1.22503 1.40599 1.22145 0.85480 0.77885 0.78268 0.80041 1.21347 1.23493 1.19579 1.20213 0.92185 0.96602 0.86163 1.21174 0.99891 0.93906 0.94925 1.20979 0.97081 0.94888 0.98164 1.20933 0.93227 1.00805 1.00663 1.17829 0.85674 0.93222 1.02418 1.43310 1.13003 1.10076 1.41998 1.23230 1.00393 0.86419 1.09173 1.22768 0.94631 0.98205 1.03124 1.70301 1.29204 1.01397 1.22880 1.25716 0.83275 1.01520 0.99912 1.20911 0.99175 0.92121 1.02914 1.20912 0.92434 0.99601 0.97142 0.77651 0.91491 0.91275 0.94653 0.90511 0.91369 0.85548 0.84367 0.78663 0.78791 0.75480 0.83675 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -12.74 19.03 74.32 1.41 -11.33 16 2 C -0.11 -5.12 10.31 31.12 0.32 -4.80 16 3 C 0.27 11.53 5.45 84.57 0.46 12.00 16 4 N -0.59 -25.50 2.49 -716.92 -1.78 -27.28 16 5 C -0.26 -12.71 9.66 84.03 0.81 -11.89 16 6 H 0.08 3.75 7.90 -2.91 -0.02 3.72 16 7 C -0.04 -2.22 4.85 84.86 0.41 -1.81 16 8 N -0.91 -50.27 9.50 21.65 0.21 -50.07 16 9 Si 0.95 42.73 29.61 68.60 2.03 44.76 16 10 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.31 -14.41 7.11 99.48 0.71 -13.70 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 C 0.17 5.97 5.82 85.63 0.50 6.47 16 14 C -0.10 -3.21 5.24 -19.85 -0.10 -3.31 16 15 C -0.09 -3.01 9.69 22.25 0.22 -2.79 16 16 C -0.14 -4.07 9.47 22.38 0.21 -3.86 16 17 C 0.10 2.95 6.63 38.08 0.25 3.21 16 18 N -0.41 -11.17 2.99 -350.38 -1.05 -12.22 16 19 C -0.06 -1.52 10.86 83.05 0.90 -0.61 16 20 C -0.04 -1.04 11.85 83.52 0.99 -0.05 16 21 N -0.52 -15.05 11.24 -199.71 -2.25 -17.30 16 22 C 0.18 4.66 11.91 180.00 2.14 6.80 16 23 C -0.13 -3.71 9.47 22.38 0.21 -3.49 16 24 C -0.08 -2.50 8.41 22.25 0.19 -2.31 16 25 H 0.21 7.55 7.80 -4.43 -0.03 7.52 16 26 H 0.07 3.30 6.44 -2.38 -0.02 3.29 16 27 H 0.07 2.49 7.97 -2.39 -0.02 2.47 16 28 H 0.24 13.55 8.31 -92.71 -0.77 12.78 16 29 H 0.08 2.25 7.88 -2.39 -0.02 2.23 16 30 H 0.07 2.22 7.96 -2.39 -0.02 2.20 16 31 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 32 H 0.14 3.47 6.82 -2.91 -0.02 3.45 16 33 H 0.20 3.71 7.15 -2.91 -0.02 3.69 16 34 H 0.20 3.61 8.06 -2.91 -0.02 3.59 16 35 H 0.23 4.47 7.07 -2.91 -0.02 4.45 16 36 H 0.15 3.25 6.77 -2.91 -0.02 3.23 16 37 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -63.28 322.06 7.16 -56.12 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 1.07 Total: 23.76 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 8.93 Total: -17.78 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -4.87 Total: -106.87 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -63.28 7.16 -56.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491555317.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.179 kcal (2) G-P(sol) polarization free energy of solvation -63.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds