Wall clock time and date at job start Tue Mar 31 2020 05:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47018 * 2 1 4 4 N 1.46494 * 109.47244 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00430 * 275.81417 * 4 3 2 6 6 H 1.08001 * 119.99984 * 39.64100 * 5 4 3 7 7 C 1.38813 * 119.99856 * 219.65045 * 5 4 3 8 8 N 1.31619 * 119.99960 * 18.02158 * 7 5 4 9 9 Si 1.86801 * 119.99695 * 198.02759 * 7 5 4 10 10 H 1.48500 * 109.47211 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47071 * 120.00180 * 9 7 5 12 12 H 1.48500 * 109.47040 * 239.99808 * 9 7 5 13 13 C 1.46505 * 119.99765 * 95.80367 * 4 3 2 14 14 C 1.50693 * 109.47547 * 270.00413 * 13 4 3 15 15 C 1.38247 * 119.98765 * 269.72576 * 14 13 4 16 16 C 1.50699 * 119.99002 * 0.02562 * 15 14 13 17 17 C 1.38217 * 120.01086 * 179.72404 * 15 14 13 18 18 C 1.38350 * 119.98771 * 0.55054 * 17 15 14 19 19 Cl 1.73601 * 120.01381 * 179.74700 * 18 17 15 20 20 C 1.38354 * 119.97348 * 359.72214 * 18 17 15 21 21 C 1.38211 * 119.98575 * 0.02562 * 20 18 17 22 22 C 1.50706 * 119.99173 * 180.02562 * 21 20 18 23 23 H 1.08999 * 109.46834 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47108 * 299.99808 * 1 2 3 25 25 H 1.08996 * 109.47342 * 59.99958 * 1 2 3 26 26 H 1.08999 * 109.47108 * 240.00192 * 2 1 3 27 27 H 1.09003 * 109.47034 * 119.99803 * 2 1 3 28 28 H 1.08999 * 109.47025 * 60.00141 * 3 2 1 29 29 H 1.08996 * 109.47099 * 300.00191 * 3 2 1 30 30 H 0.97006 * 120.00059 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46912 * 30.00647 * 13 4 3 32 32 H 1.09004 * 109.46658 * 149.99868 * 13 4 3 33 33 H 1.08995 * 109.47155 * 89.99770 * 16 15 14 34 34 H 1.08999 * 109.47089 * 209.99700 * 16 15 14 35 35 H 1.08998 * 109.47220 * 329.99896 * 16 15 14 36 36 H 1.08002 * 120.00063 * 180.27328 * 17 15 14 37 37 H 1.07999 * 120.00893 * 180.02562 * 20 18 17 38 38 H 1.08997 * 109.46931 * 269.97518 * 22 21 20 39 39 H 1.08994 * 109.47203 * 29.97359 * 22 21 20 40 40 H 1.08997 * 109.47106 * 149.97617 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.3226 1.1807 6 1 3.8353 0.6452 1.9437 7 6 5.3378 2.0719 1.3962 8 7 5.5796 3.1332 0.6563 9 14 6.5400 1.5737 2.7363 10 1 6.0410 0.3539 3.4206 11 1 7.8674 1.2947 2.1317 12 1 6.6673 2.6768 3.7222 13 6 4.2380 1.5707 -1.2614 14 6 4.4894 0.2012 -1.8377 15 6 5.6441 -0.4849 -1.5104 16 6 6.6507 0.1368 -0.5769 17 6 5.8725 -1.7434 -2.0342 18 6 4.9506 -2.3118 -2.8951 19 17 5.2400 -3.8897 -3.5586 20 6 3.7979 -1.6223 -3.2268 21 6 3.5681 -0.3661 -2.6983 22 6 2.3122 0.3848 -3.0590 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 6.3820 3.6570 0.8071 31 1 3.6491 2.1587 -1.9655 32 1 5.1903 2.0688 -1.0794 33 1 6.4128 -0.1395 0.4502 34 1 7.6489 -0.2221 -0.8278 35 1 6.6185 1.2216 -0.6781 36 1 6.7725 -2.2810 -1.7748 37 1 3.0777 -2.0656 -3.8985 38 1 2.4938 0.9915 -3.9461 39 1 1.5103 -0.3248 -3.2620 40 1 2.0244 1.0309 -2.2297 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000511522900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:14 Heat of formation + Delta-G solvation = 11.972295 kcal Electronic energy + Delta-G solvation = -21063.236768 eV Core-core repulsion = 18096.390697 eV Total energy + Delta-G solvation = -2966.846071 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82696 -38.01230 -37.17412 -35.19266 -33.97846 -33.24310 -31.98773 -28.84466 -27.81567 -27.10291 -26.68806 -23.91124 -21.92585 -21.64104 -21.36312 -18.65949 -17.32381 -17.12196 -16.62597 -16.20573 -15.70459 -15.47519 -15.02631 -14.64896 -14.44274 -13.92339 -13.86434 -13.83213 -13.58048 -13.50304 -13.47766 -13.14808 -12.91700 -12.52959 -12.50795 -12.31361 -12.14351 -12.10828 -11.81693 -11.78152 -11.69429 -11.61610 -11.33557 -11.20394 -10.44742 -9.45934 -9.23611 -8.45673 -7.77273 -5.41370 0.36742 0.45651 1.21468 1.40973 1.47894 1.53133 2.49674 2.74986 3.30761 3.88884 3.91009 3.98962 4.22342 4.30855 4.37307 4.44379 4.50674 4.58405 4.65688 4.71845 4.82477 4.87805 4.88235 4.92619 5.00469 5.05194 5.12717 5.20805 5.26585 5.31082 5.33726 5.48463 5.52965 5.63076 5.67713 5.74011 5.81130 6.01344 6.11860 6.55091 7.23597 7.90098 8.44553 9.17390 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014262 B = 0.007624 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.762127 B = 3671.590080 C = 4885.419491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 C 0.146 3.854 4 N -0.585 5.585 5 C -0.255 4.255 6 H 0.040 0.960 7 C -0.004 4.004 8 N -0.908 5.908 9 Si 0.921 3.079 10 H -0.276 1.276 11 H -0.276 1.276 12 H -0.296 1.296 13 C 0.175 3.825 14 C -0.087 4.087 15 C -0.067 4.067 16 C -0.109 4.109 17 C -0.131 4.131 18 C -0.043 4.043 19 Cl -0.075 7.075 20 C -0.123 4.123 21 C -0.070 4.070 22 C -0.123 4.123 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.055 0.945 30 H 0.253 0.747 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.134 0.866 37 H 0.146 0.854 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.381 -7.970 -8.355 12.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.179 4.179 3 C 0.021 3.979 4 N -0.305 5.305 5 C -0.385 4.385 6 H 0.057 0.943 7 C -0.202 4.202 8 N -0.552 5.552 9 Si 0.750 3.250 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.223 1.223 13 C 0.050 3.950 14 C -0.090 4.090 15 C -0.068 4.068 16 C -0.165 4.165 17 C -0.149 4.149 18 C -0.070 4.070 19 Cl -0.046 7.046 20 C -0.142 4.142 21 C -0.072 4.072 22 C -0.179 4.179 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.152 0.848 37 H 0.164 0.836 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.244 -7.946 -8.381 12.304 hybrid contribution 1.045 -0.326 1.057 1.522 sum -3.199 -8.273 -7.324 11.503 Atomic orbital electron populations 1.21661 0.94523 1.01621 1.01920 1.22094 0.96130 0.98935 1.00721 1.21088 0.83715 0.94493 0.98628 1.43773 1.00355 1.84755 1.01596 1.18960 1.07648 1.17098 0.94826 0.94262 1.25456 1.01497 0.94555 0.98678 1.70036 1.27002 1.15705 1.42451 0.86007 0.80890 0.77701 0.80425 1.20133 1.20132 1.22298 1.19935 0.99509 0.89833 0.85756 1.20959 0.93037 0.99925 0.95083 1.19793 0.96063 0.93865 0.97070 1.20868 0.96188 1.01775 0.97669 1.20935 1.00097 0.95242 0.98662 1.20785 0.97570 0.87998 1.00639 1.98322 1.96157 1.25334 1.84808 1.20997 0.96714 0.94581 1.01901 1.19885 0.96858 0.94217 0.96190 1.21127 0.93642 1.00475 1.02659 0.92448 0.93183 0.91667 0.91894 0.95415 0.95377 0.92721 0.93728 0.94161 0.89843 0.92474 0.91702 0.91114 0.84838 0.83598 0.90377 0.89987 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.91 71.98 0.71 -2.94 16 2 C -0.14 -4.79 5.78 30.60 0.18 -4.61 16 3 C 0.15 5.75 4.97 86.38 0.43 6.18 16 4 N -0.59 -27.11 2.41 -706.35 -1.70 -28.81 16 5 C -0.25 -13.21 8.67 84.03 0.73 -12.48 16 6 H 0.04 2.15 7.89 -2.91 -0.02 2.12 16 7 C 0.00 -0.19 3.06 84.86 0.26 0.07 16 8 N -0.91 -48.87 11.04 21.65 0.24 -48.63 16 9 Si 0.92 42.40 27.64 68.60 1.90 44.30 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 13 C 0.18 7.68 4.57 85.63 0.39 8.07 16 14 C -0.09 -3.40 5.45 -19.86 -0.11 -3.51 16 15 C -0.07 -2.60 5.88 -19.87 -0.12 -2.72 16 16 C -0.11 -4.42 7.93 71.24 0.56 -3.86 16 17 C -0.13 -4.43 9.49 22.29 0.21 -4.22 16 18 C -0.04 -1.33 6.32 22.32 0.14 -1.19 16 19 Cl -0.07 -1.97 28.96 -2.72 -0.08 -2.05 16 20 C -0.12 -3.66 9.49 22.29 0.21 -3.45 16 21 C -0.07 -2.30 4.70 -19.87 -0.09 -2.39 16 22 C -0.12 -3.31 7.90 71.24 0.56 -2.75 16 23 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 2.16 4.98 -2.39 -0.01 2.15 16 27 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.03 1.18 8.09 -2.39 -0.02 1.16 16 29 H 0.05 1.96 6.04 -2.39 -0.01 1.94 16 30 H 0.25 13.26 8.31 -92.70 -0.77 12.49 16 31 H 0.04 1.67 6.46 -2.38 -0.02 1.66 16 32 H 0.08 4.16 3.50 -2.38 -0.01 4.15 16 33 H 0.06 2.52 5.59 -2.39 -0.01 2.50 16 34 H 0.06 2.26 8.09 -2.39 -0.02 2.24 16 35 H 0.07 3.20 4.81 -2.39 -0.01 3.19 16 36 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 37 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 40 H 0.08 2.27 2.80 -2.39 -0.01 2.27 16 Total: -1.00 -54.90 316.95 5.47 -49.42 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 1.04 Total: 15.56 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 4.07 Total: -29.79 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -1.46 Total: -77.44 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.90 Total: 44.30 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.08 Total: -2.05 kcal Total: -54.90 5.47 -49.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000511522900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.395 kcal (2) G-P(sol) polarization free energy of solvation -54.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds