Wall clock time and date at job start Tue Mar 31 2020 05:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 N 1.46506 * 109.47289 * 180.02562 * 3 2 1 5 5 C 1.46493 * 119.99811 * 89.99895 * 4 3 2 6 6 C 1.53000 * 109.47156 * 90.00429 * 5 4 3 7 7 C 1.53001 * 109.47231 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47054 * 179.97438 * 7 6 5 9 9 H 1.07996 * 119.99937 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99882 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00004 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 119.99884 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47081 * 60.00133 * 12 10 8 14 14 H 1.48498 * 109.47154 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47189 * 300.00026 * 12 10 8 16 16 C 1.39743 * 119.99910 * 270.00225 * 4 3 2 17 17 C 1.38891 * 120.05980 * 179.72346 * 16 4 3 18 18 C 1.38110 * 119.93965 * 179.72569 * 17 16 4 19 19 C 1.38382 * 120.05465 * 0.54535 * 18 17 16 20 20 Cl 1.73602 * 119.93263 * 179.70462 * 19 18 17 21 21 C 1.38374 * 120.12668 * 359.73144 * 19 18 17 22 22 C 1.38110 * 120.06293 * 359.97438 * 21 19 18 23 23 H 1.09004 * 109.47298 * 59.99717 * 1 2 3 24 24 H 1.09004 * 109.47552 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 26 26 H 1.09001 * 109.46997 * 240.00426 * 2 1 3 27 27 H 1.08996 * 109.47452 * 120.00000 * 2 1 3 28 28 H 1.09001 * 109.47289 * 60.00050 * 3 2 1 29 29 H 1.09004 * 109.47261 * 300.00306 * 3 2 1 30 30 H 1.09006 * 109.47571 * 210.00074 * 5 4 3 31 31 H 1.09005 * 109.47727 * 330.00531 * 5 4 3 32 32 H 1.09001 * 109.47195 * 299.99586 * 6 5 4 33 33 H 1.08997 * 109.47280 * 59.99767 * 6 5 4 34 34 H 1.08997 * 109.47602 * 300.00018 * 7 6 5 35 35 H 1.08996 * 109.47242 * 60.00308 * 7 6 5 36 36 H 0.96997 * 119.99955 * 179.97438 * 11 10 8 37 37 H 1.08002 * 120.03067 * 359.97150 * 17 16 4 38 38 H 1.07993 * 119.97204 * 180.25370 * 18 17 16 39 39 H 1.08010 * 119.96928 * 179.97438 * 21 19 18 40 40 H 1.08001 * 120.02956 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2369 1.4427 -1.2696 6 6 4.4918 2.8853 -1.7112 7 6 5.2567 2.8855 -3.0362 8 6 5.5072 4.3064 -3.4714 9 1 5.1563 5.1272 -2.8635 10 6 6.1843 4.5585 -4.6457 11 7 6.6121 3.5590 -5.3858 12 14 6.4954 6.3197 -5.1848 13 1 7.2986 7.0196 -4.1501 14 1 7.2378 6.3200 -6.4709 15 1 5.1978 7.0198 -5.3615 16 6 4.2042 1.4423 1.2093 17 6 5.5931 1.4365 1.2102 18 6 6.2817 1.4421 2.4074 19 6 5.5889 1.4420 3.6054 20 17 6.4576 1.4412 5.1084 21 6 4.2052 1.4419 3.6074 22 6 3.5115 1.4425 2.4132 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 5.1895 0.9289 -1.1399 31 1 3.6475 0.9290 -2.0292 32 1 3.5393 3.3991 -1.8411 33 1 5.0812 3.3990 -0.9517 34 1 6.2092 2.3717 -2.9061 35 1 4.6677 2.3717 -3.7959 36 1 7.0882 3.7364 -6.2120 37 1 6.1342 1.4317 0.2755 38 1 7.3616 1.4417 2.4087 39 1 3.6670 1.4414 4.5439 40 1 2.4315 1.4420 2.4154 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532713611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:11 Heat of formation + Delta-G solvation = -15.062348 kcal Electronic energy + Delta-G solvation = -19347.521348 eV Core-core repulsion = 16379.502967 eV Total energy + Delta-G solvation = -2968.018381 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.75662 -38.25804 -36.98071 -35.95262 -34.50824 -33.08753 -31.92740 -30.25671 -28.67357 -26.54874 -24.90032 -23.50961 -22.68705 -22.27941 -21.06097 -18.86461 -18.42071 -17.04210 -16.86536 -16.48903 -16.04866 -15.58763 -15.36643 -15.07195 -14.86396 -14.36885 -14.34141 -14.19368 -13.84590 -13.28966 -13.11922 -12.91440 -12.82863 -12.65440 -12.59538 -12.49798 -12.40501 -12.16472 -12.10666 -11.68125 -11.55885 -11.48853 -11.33570 -11.27049 -10.55537 -10.43816 -9.95194 -8.24744 -8.12815 -6.31430 0.42728 0.48358 1.37145 1.39201 1.41469 1.49501 2.16027 2.40805 2.82345 3.12503 3.81834 3.89697 4.04711 4.11084 4.16297 4.38169 4.41080 4.43364 4.46554 4.55351 4.63422 4.71070 4.75566 4.86449 4.96838 4.99903 5.06673 5.19002 5.22213 5.23197 5.27223 5.32483 5.43860 5.47703 5.51615 5.71027 5.77907 5.84610 6.22199 6.36419 6.56560 6.84598 7.37700 8.90421 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012958 B = 0.004121 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.293898 B = 6792.664796 C = 8513.776060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.621 5.621 5 C 0.131 3.869 6 C -0.106 4.106 7 C 0.028 3.972 8 C -0.544 4.544 9 H 0.054 0.946 10 C 0.004 3.996 11 N -0.931 5.931 12 Si 0.960 3.040 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.267 1.267 16 C 0.219 3.781 17 C -0.203 4.203 18 C -0.067 4.067 19 C -0.109 4.109 20 Cl -0.085 7.085 21 C -0.060 4.060 22 C -0.190 4.190 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.042 0.958 34 H -0.006 1.006 35 H -0.003 1.003 36 H 0.264 0.736 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.150 0.850 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.412 -7.210 17.483 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C -0.005 4.005 4 N -0.328 5.328 5 C 0.008 3.992 6 C -0.145 4.145 7 C -0.010 4.010 8 C -0.582 4.582 9 H 0.072 0.928 10 C -0.195 4.195 11 N -0.571 5.571 12 Si 0.785 3.215 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.192 1.192 16 C 0.115 3.885 17 C -0.226 4.226 18 C -0.086 4.086 19 C -0.138 4.138 20 Cl -0.056 7.056 21 C -0.079 4.079 22 C -0.213 4.213 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.013 0.987 35 H 0.015 0.985 36 H 0.073 0.927 37 H 0.140 0.860 38 H 0.153 0.847 39 H 0.168 0.832 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.364 -7.254 17.266 20.939 hybrid contribution 0.731 0.808 -0.721 1.306 sum -8.634 -6.446 16.545 19.744 Atomic orbital electron populations 1.21681 0.93857 1.02391 1.02444 1.21895 0.97002 0.96565 1.02015 1.21682 0.78139 0.97364 1.03364 1.46865 1.05454 1.78106 1.02416 1.21424 0.96831 0.96366 0.84587 1.21772 0.99299 0.96367 0.97086 1.18924 0.94189 0.95470 0.92368 1.21629 1.36111 0.93783 1.06682 0.92764 1.25905 0.95354 1.01509 0.96687 1.70070 1.39291 1.33007 1.14703 0.85580 0.78641 0.79747 0.77580 1.19459 1.20670 1.19208 1.18143 0.91244 0.92426 0.86705 1.20797 0.92973 1.10385 0.98438 1.20889 1.00470 0.96955 0.90279 1.20682 0.92798 1.13810 0.86462 1.98325 1.77086 1.97516 1.32703 1.20982 0.91541 0.96426 0.98991 1.20807 1.00739 1.10017 0.89706 0.92593 0.91995 0.91546 0.92898 0.91858 0.89368 0.90911 0.91211 0.90515 0.93358 0.93962 0.98737 0.98501 0.92733 0.86032 0.84697 0.83182 0.83305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.14 -2.47 6.26 30.59 0.19 -2.28 16 3 C 0.12 2.46 5.16 86.38 0.45 2.91 16 4 N -0.62 -16.70 2.61 -697.25 -1.82 -18.51 16 5 C 0.13 4.21 5.17 86.38 0.45 4.65 16 6 C -0.11 -4.27 5.48 30.59 0.17 -4.10 16 7 C 0.03 1.45 4.97 29.85 0.15 1.60 16 8 C -0.54 -30.93 9.11 25.60 0.23 -30.69 16 9 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 10 C 0.00 0.20 5.46 84.65 0.46 0.66 16 11 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 12 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 C 0.22 5.88 6.55 38.19 0.25 6.13 16 17 C -0.20 -5.86 9.21 22.40 0.21 -5.65 16 18 C -0.07 -1.74 9.82 22.27 0.22 -1.53 16 19 C -0.11 -2.63 6.32 22.34 0.14 -2.48 16 20 Cl -0.08 -1.87 28.95 -2.72 -0.08 -1.95 16 21 C -0.06 -1.28 9.82 22.27 0.22 -1.07 16 22 C -0.19 -4.21 9.21 22.40 0.21 -4.01 16 23 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 1.58 6.20 -2.39 -0.01 1.56 16 29 H 0.07 1.61 8.07 -2.38 -0.02 1.59 16 30 H 0.07 2.27 6.19 -2.38 -0.01 2.26 16 31 H 0.08 2.37 8.07 -2.38 -0.02 2.35 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 35 H 0.00 -0.19 8.14 -2.39 -0.02 -0.20 16 36 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.12 3.77 6.14 -2.91 -0.02 3.76 16 38 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 39 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 40 H 0.15 2.59 6.14 -2.91 -0.02 2.58 16 Total: -1.00 -62.53 344.40 5.46 -57.06 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 1.00 Total: 10.17 kcal Atomic # 6 Polarization: -41.24 SS G_CDS: 4.05 Total: -37.19 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -1.53 Total: -74.36 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.08 Total: -1.95 kcal Total: -62.53 5.46 -57.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532713611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.999 kcal (2) G-P(sol) polarization free energy of solvation -62.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds