Wall clock time and date at job start Tue Mar 31 2020 05:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46870 * 2 1 4 4 C 1.52994 * 109.47419 * 120.00131 * 2 1 3 5 5 N 1.46503 * 109.47495 * 177.02083 * 4 2 1 6 6 C 1.36940 * 119.99534 * 95.76488 * 5 4 2 7 7 H 1.08008 * 119.99299 * 217.96048 * 6 5 4 8 8 C 1.38809 * 120.00428 * 37.96071 * 6 5 4 9 9 N 1.31620 * 119.99596 * 17.64468 * 8 6 5 10 10 Si 1.86791 * 120.00303 * 197.64707 * 8 6 5 11 11 H 1.48498 * 109.47451 * 90.00112 * 10 8 6 12 12 H 1.48503 * 109.47246 * 210.00027 * 10 8 6 13 13 H 1.48506 * 109.47139 * 330.00110 * 10 8 6 14 14 C 1.46499 * 119.99897 * 275.77132 * 5 4 2 15 15 H 1.08993 * 109.47441 * 354.22105 * 14 5 4 16 16 C 1.53000 * 109.46766 * 234.21790 * 14 5 4 17 17 C 1.50705 * 109.47098 * 114.22367 * 14 5 4 18 18 C 1.38237 * 120.00599 * 70.98176 * 17 14 5 19 19 C 1.38216 * 120.01152 * 180.02562 * 18 17 14 20 20 C 1.38264 * 120.02811 * 359.97438 * 19 18 17 21 21 C 1.38197 * 120.00992 * 359.97438 * 20 19 18 22 22 C 1.38332 * 120.00511 * 250.70680 * 17 14 5 23 23 Cl 1.73603 * 120.01189 * 359.97438 * 22 17 14 24 24 H 1.09004 * 109.47154 * 299.99533 * 1 2 3 25 25 H 1.09000 * 109.47411 * 59.99898 * 1 2 3 26 26 H 1.08999 * 109.47052 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46958 * 239.99984 * 2 1 3 28 28 H 1.08997 * 109.47051 * 65.91920 * 3 2 1 29 29 H 1.09005 * 109.46764 * 185.91700 * 3 2 1 30 30 H 1.08990 * 109.47171 * 305.91381 * 3 2 1 31 31 H 1.08998 * 109.47670 * 297.02408 * 4 2 1 32 32 H 1.09004 * 109.47127 * 57.02044 * 4 2 1 33 33 H 0.96999 * 119.99702 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47755 * 300.00334 * 16 14 5 35 35 H 1.08998 * 109.46998 * 60.00449 * 16 14 5 36 36 H 1.08996 * 109.47477 * 179.97438 * 16 14 5 37 37 H 1.08000 * 119.99597 * 359.97438 * 18 17 14 38 38 H 1.08005 * 119.99049 * 179.97438 * 19 18 17 39 39 H 1.07996 * 119.99386 * 179.97438 * 20 19 18 40 40 H 1.08003 * 120.00485 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5033 -0.7837 1.2138 6 6 4.2450 0.1600 1.8730 7 1 5.1600 0.5305 1.4347 8 6 3.8209 0.6405 3.1043 9 7 2.9262 -0.0295 3.7994 10 14 4.5197 2.2378 3.7747 11 1 3.6794 3.3749 3.3207 12 1 4.5279 2.1901 5.2589 13 1 5.9073 2.4183 3.2775 14 6 4.1730 -1.8557 0.4732 15 1 3.4294 -2.5622 0.1046 16 6 5.1510 -2.5815 1.3993 17 6 4.9270 -1.2668 -0.6912 18 6 6.0686 -0.5196 -0.4688 19 6 6.7599 0.0211 -1.5366 20 6 6.3104 -0.1854 -2.8277 21 6 5.1699 -0.9331 -3.0513 22 6 4.4800 -1.4785 -1.9831 23 17 3.0509 -2.4233 -2.2635 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.7657 1.9248 0.9382 29 1 3.1248 1.4443 -0.1059 30 1 1.5928 1.9860 -0.8322 31 1 1.7210 -0.1776 2.1384 32 1 1.6338 -1.7324 1.2763 33 1 2.6301 0.3061 4.6600 34 1 5.8947 -1.8750 1.7680 35 1 4.6057 -3.0075 2.2415 36 1 5.6490 -3.3794 0.8485 37 1 6.4199 -0.3575 0.5395 38 1 7.6515 0.6052 -1.3624 39 1 6.8508 0.2376 -3.6616 40 1 4.8192 -1.0947 -4.0599 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563523760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:20 Heat of formation + Delta-G solvation = 24.196153 kcal Electronic energy + Delta-G solvation = -21247.757387 eV Core-core repulsion = 18281.441382 eV Total energy + Delta-G solvation = -2966.316005 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.16040 -36.62304 -36.00188 -34.01765 -32.27278 -30.29927 -29.86266 -28.16349 -26.25270 -25.57064 -23.78727 -22.21809 -21.91435 -19.79274 -18.89422 -17.12153 -15.95847 -15.24623 -15.13667 -14.59499 -14.08785 -13.85683 -13.42554 -13.31488 -13.15492 -12.88725 -12.76148 -11.98358 -11.70776 -11.48558 -11.42383 -11.28916 -11.09924 -11.04819 -10.94646 -10.80288 -10.48533 -10.44680 -10.27581 -10.19688 -9.91931 -9.67257 -9.44667 -9.38814 -8.43342 -8.38255 -8.15912 -6.50144 -5.74358 -3.33510 1.62578 1.77250 2.60045 3.35537 3.43000 3.44500 4.09973 4.50442 5.18971 5.19498 5.34397 5.44075 5.55475 5.71993 5.86683 5.89200 5.95190 6.11102 6.15517 6.16318 6.41207 6.42862 6.45831 6.55507 6.61224 6.64563 6.67964 6.72452 6.81365 6.87146 7.08337 7.10398 7.18039 7.20749 7.28597 7.32814 7.43892 7.82198 7.88395 8.56688 9.23506 9.84736 10.44151 11.25905 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015310 B = 0.008421 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.435325 B = 3324.305015 C = 4062.935515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C -0.121 4.121 4 C 0.157 3.843 5 N -0.567 5.567 6 C -0.250 4.250 7 H 0.063 0.937 8 C 0.016 3.984 9 N -0.887 5.887 10 Si 0.889 3.111 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.278 1.278 14 C 0.193 3.807 15 H 0.067 0.933 16 C -0.144 4.144 17 C -0.053 4.053 18 C -0.087 4.087 19 C -0.124 4.124 20 C -0.127 4.127 21 C -0.120 4.120 22 C -0.034 4.034 23 Cl -0.080 7.080 24 H 0.048 0.952 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.020 0.980 31 H 0.099 0.901 32 H 0.017 0.983 33 H 0.253 0.747 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.032 0.968 37 H 0.139 0.861 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.620 -2.192 -10.432 10.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 C -0.178 4.178 4 C 0.031 3.969 5 N -0.285 5.285 6 C -0.380 4.380 7 H 0.081 0.919 8 C -0.184 4.184 9 N -0.530 5.530 10 Si 0.719 3.281 11 H -0.214 1.214 12 H -0.219 1.219 13 H -0.204 1.204 14 C 0.086 3.914 15 H 0.085 0.915 16 C -0.202 4.202 17 C -0.056 4.056 18 C -0.105 4.105 19 C -0.142 4.142 20 C -0.146 4.146 21 C -0.139 4.139 22 C -0.061 4.061 23 Cl -0.051 7.051 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.116 0.884 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.156 0.844 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.399 -2.258 -10.236 10.753 hybrid contribution 0.144 0.990 0.279 1.039 sum 2.543 -1.268 -9.957 10.355 Atomic orbital electron populations 1.21764 0.97445 1.00266 1.00301 1.21822 0.93281 0.97532 1.01584 1.21557 1.01754 0.95577 0.98946 1.21024 0.82832 0.96514 0.96512 1.43783 1.00880 1.27304 1.56545 1.19004 1.06977 1.14262 0.97751 0.91914 1.25125 0.99174 0.98659 0.95420 1.69953 1.33607 1.37048 1.12408 0.86514 0.79041 0.84627 0.77931 1.21370 1.21884 1.20368 1.19490 0.93137 0.90071 0.88741 0.91504 1.22058 0.99877 0.98877 0.99418 1.20799 0.94524 0.96285 0.94018 1.21274 0.94057 0.95596 0.99589 1.21224 1.00084 1.00099 0.92813 1.20890 0.96663 1.00021 0.97014 1.20865 0.96176 0.99204 0.97685 1.20818 0.90739 0.99898 0.94648 1.98321 1.39070 1.71528 1.96155 0.93292 0.94294 0.93816 0.92351 0.93667 0.91848 0.96044 0.88384 0.96502 0.93697 0.92095 0.92524 0.94948 0.84385 0.86342 0.86251 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.19 37.16 0.34 -2.11 16 2 C -0.12 -2.43 3.14 -90.62 -0.28 -2.72 16 3 C -0.12 -2.50 8.58 37.16 0.32 -2.18 16 4 C 0.16 3.58 4.65 -4.04 -0.02 3.56 16 5 N -0.57 -12.95 2.11 -166.98 -0.35 -13.30 16 6 C -0.25 -6.16 6.38 -15.06 -0.10 -6.26 16 7 H 0.06 1.54 5.13 -52.48 -0.27 1.27 16 8 C 0.02 0.42 4.99 -17.43 -0.09 0.33 16 9 N -0.89 -24.30 11.34 55.49 0.63 -23.67 16 10 Si 0.89 20.87 29.59 -169.99 -5.03 15.84 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 14 C 0.19 3.91 2.92 -69.08 -0.20 3.70 16 15 H 0.07 1.35 5.97 -51.93 -0.31 1.04 16 16 C -0.14 -2.80 8.75 37.16 0.32 -2.48 16 17 C -0.05 -0.98 4.98 -104.59 -0.52 -1.50 16 18 C -0.09 -1.53 7.82 -39.59 -0.31 -1.84 16 19 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 20 C -0.13 -1.77 10.05 -39.59 -0.40 -2.16 16 21 C -0.12 -1.79 9.83 -39.55 -0.39 -2.18 16 22 C -0.03 -0.58 6.31 -39.50 -0.25 -0.83 16 23 Cl -0.08 -1.28 25.62 -51.86 -1.33 -2.61 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.16 6.64 -51.93 -0.35 0.82 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.42 7.03 -51.93 -0.36 1.05 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 2.54 5.48 -51.93 -0.28 2.25 16 32 H 0.02 0.38 8.00 -51.93 -0.42 -0.03 16 33 H 0.25 6.80 8.31 -40.82 -0.34 6.47 16 34 H 0.06 1.23 6.27 -51.93 -0.33 0.90 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.14 2.56 5.33 -52.49 -0.28 2.28 16 38 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 39 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 LS Contribution 326.94 15.07 4.93 4.93 Total: -1.00 -26.23 326.94 -9.08 -35.31 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.96 Total: 2.41 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -1.97 Total: -18.91 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.28 Total: -36.97 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.33 Total: -2.61 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.23 -9.08 -35.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563523760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.504 kcal (2) G-P(sol) polarization free energy of solvation -26.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds