Wall clock time and date at job start Tue Mar 31 2020 05:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46870 * 2 1 4 4 C 1.52994 * 109.47419 * 120.00131 * 2 1 3 5 5 N 1.46503 * 109.47495 * 177.02083 * 4 2 1 6 6 C 1.36940 * 119.99534 * 95.76488 * 5 4 2 7 7 H 1.08008 * 119.99299 * 217.96048 * 6 5 4 8 8 C 1.38809 * 120.00428 * 37.96071 * 6 5 4 9 9 N 1.31620 * 119.99596 * 17.64468 * 8 6 5 10 10 Si 1.86791 * 120.00303 * 197.64707 * 8 6 5 11 11 H 1.48498 * 109.47451 * 90.00112 * 10 8 6 12 12 H 1.48503 * 109.47246 * 210.00027 * 10 8 6 13 13 H 1.48506 * 109.47139 * 330.00110 * 10 8 6 14 14 C 1.46499 * 119.99897 * 275.77132 * 5 4 2 15 15 H 1.08993 * 109.47441 * 354.22105 * 14 5 4 16 16 C 1.53000 * 109.46766 * 234.21790 * 14 5 4 17 17 C 1.50705 * 109.47098 * 114.22367 * 14 5 4 18 18 C 1.38237 * 120.00599 * 70.98176 * 17 14 5 19 19 C 1.38216 * 120.01152 * 180.02562 * 18 17 14 20 20 C 1.38264 * 120.02811 * 359.97438 * 19 18 17 21 21 C 1.38197 * 120.00992 * 359.97438 * 20 19 18 22 22 C 1.38332 * 120.00511 * 250.70680 * 17 14 5 23 23 Cl 1.73603 * 120.01189 * 359.97438 * 22 17 14 24 24 H 1.09004 * 109.47154 * 299.99533 * 1 2 3 25 25 H 1.09000 * 109.47411 * 59.99898 * 1 2 3 26 26 H 1.08999 * 109.47052 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46958 * 239.99984 * 2 1 3 28 28 H 1.08997 * 109.47051 * 65.91920 * 3 2 1 29 29 H 1.09005 * 109.46764 * 185.91700 * 3 2 1 30 30 H 1.08990 * 109.47171 * 305.91381 * 3 2 1 31 31 H 1.08998 * 109.47670 * 297.02408 * 4 2 1 32 32 H 1.09004 * 109.47127 * 57.02044 * 4 2 1 33 33 H 0.96999 * 119.99702 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47755 * 300.00334 * 16 14 5 35 35 H 1.08998 * 109.46998 * 60.00449 * 16 14 5 36 36 H 1.08996 * 109.47477 * 179.97438 * 16 14 5 37 37 H 1.08000 * 119.99597 * 359.97438 * 18 17 14 38 38 H 1.08005 * 119.99049 * 179.97438 * 19 18 17 39 39 H 1.07996 * 119.99386 * 179.97438 * 20 19 18 40 40 H 1.08003 * 120.00485 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5033 -0.7837 1.2138 6 6 4.2450 0.1600 1.8730 7 1 5.1600 0.5305 1.4347 8 6 3.8209 0.6405 3.1043 9 7 2.9262 -0.0295 3.7994 10 14 4.5197 2.2378 3.7747 11 1 3.6794 3.3749 3.3207 12 1 4.5279 2.1901 5.2589 13 1 5.9073 2.4183 3.2775 14 6 4.1730 -1.8557 0.4732 15 1 3.4294 -2.5622 0.1046 16 6 5.1510 -2.5815 1.3993 17 6 4.9270 -1.2668 -0.6912 18 6 6.0686 -0.5196 -0.4688 19 6 6.7599 0.0211 -1.5366 20 6 6.3104 -0.1854 -2.8277 21 6 5.1699 -0.9331 -3.0513 22 6 4.4800 -1.4785 -1.9831 23 17 3.0509 -2.4233 -2.2635 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.7657 1.9248 0.9382 29 1 3.1248 1.4443 -0.1059 30 1 1.5928 1.9860 -0.8322 31 1 1.7210 -0.1776 2.1384 32 1 1.6338 -1.7324 1.2763 33 1 2.6301 0.3061 4.6600 34 1 5.8947 -1.8750 1.7680 35 1 4.6057 -3.0075 2.2415 36 1 5.6490 -3.3794 0.8485 37 1 6.4199 -0.3575 0.5395 38 1 7.6515 0.6052 -1.3624 39 1 6.8508 0.2376 -3.6616 40 1 4.8192 -1.0947 -4.0599 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563523760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:19 Heat of formation + Delta-G solvation = 13.741676 kcal Electronic energy + Delta-G solvation = -21248.210727 eV Core-core repulsion = 18281.441382 eV Total energy + Delta-G solvation = -2966.769345 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49127 -38.26360 -37.25496 -35.58324 -34.08688 -31.55727 -31.43439 -29.68609 -27.91220 -27.35196 -25.37264 -23.75035 -23.20965 -21.31603 -20.58996 -18.70071 -17.41941 -16.89490 -16.58643 -16.16437 -15.72307 -15.39996 -14.99924 -14.80668 -14.58061 -14.30362 -14.21184 -13.56681 -13.32357 -13.07517 -13.00830 -12.79417 -12.75067 -12.58068 -12.46056 -12.27782 -12.17089 -12.04404 -11.89385 -11.80810 -11.54671 -11.38201 -11.15433 -11.00345 -10.37611 -9.63723 -9.43589 -8.39358 -7.69040 -5.29999 0.39490 0.53929 1.34385 1.45735 1.50232 1.54516 2.55463 2.88041 3.38603 3.74374 4.00479 4.08175 4.25862 4.29706 4.41552 4.48748 4.55772 4.58611 4.68472 4.78831 4.88318 4.94092 4.96985 5.05073 5.07958 5.17460 5.18157 5.27792 5.35302 5.41348 5.48466 5.50421 5.56579 5.66286 5.74037 5.80688 5.85633 6.02148 6.08012 6.61549 7.30402 7.98167 8.53580 9.27929 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015310 B = 0.008421 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.435325 B = 3324.305015 C = 4062.935515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C -0.111 4.111 4 C 0.161 3.839 5 N -0.577 5.577 6 C -0.230 4.230 7 H 0.065 0.935 8 C -0.032 4.032 9 N -0.920 5.920 10 Si 0.935 3.065 11 H -0.292 1.292 12 H -0.302 1.302 13 H -0.268 1.268 14 C 0.193 3.807 15 H 0.064 0.936 16 C -0.135 4.135 17 C -0.073 4.073 18 C -0.105 4.105 19 C -0.122 4.122 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.046 4.046 23 Cl -0.078 7.078 24 H 0.041 0.959 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.024 0.976 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.007 0.993 33 H 0.245 0.755 34 H 0.049 0.951 35 H 0.033 0.967 36 H 0.057 0.943 37 H 0.120 0.880 38 H 0.144 0.856 39 H 0.159 0.841 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.541 -1.604 -13.367 13.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 C -0.168 4.168 4 C 0.035 3.965 5 N -0.296 5.296 6 C -0.361 4.361 7 H 0.083 0.917 8 C -0.229 4.229 9 N -0.566 5.566 10 Si 0.765 3.235 11 H -0.220 1.220 12 H -0.229 1.229 13 H -0.192 1.192 14 C 0.086 3.914 15 H 0.082 0.918 16 C -0.194 4.194 17 C -0.076 4.076 18 C -0.124 4.124 19 C -0.140 4.140 20 C -0.133 4.133 21 C -0.137 4.137 22 C -0.073 4.073 23 Cl -0.050 7.050 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.025 0.975 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.138 0.862 38 H 0.161 0.839 39 H 0.176 0.824 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.342 -1.676 -13.200 13.719 hybrid contribution -0.086 0.750 1.072 1.311 sum 3.256 -0.926 -12.128 12.592 Atomic orbital electron populations 1.21708 0.95348 1.01142 1.01069 1.21698 0.95034 0.96724 1.00054 1.21433 1.00498 0.96050 0.98812 1.20866 0.83118 0.95768 0.96705 1.43912 1.00931 1.27934 1.56849 1.19172 1.06347 1.13567 0.96972 0.91721 1.25638 1.00209 1.00915 0.96116 1.70084 1.35549 1.38344 1.12582 0.85754 0.78893 0.82047 0.76761 1.21959 1.22867 1.19218 1.19522 0.93177 0.89439 0.89249 0.91756 1.21961 0.99340 0.99230 0.98848 1.20501 0.95362 0.97926 0.93828 1.21214 0.94614 0.96762 0.99775 1.21515 1.00452 0.99437 0.92603 1.21338 0.95944 0.98430 0.97594 1.21227 0.96002 0.98280 0.98198 1.20963 0.91185 1.00473 0.94690 1.98317 1.39064 1.71536 1.96044 0.93962 0.92033 0.92966 0.91796 0.95728 0.93871 0.93514 0.91513 0.97474 0.94569 0.93168 0.94785 0.92445 0.86216 0.83850 0.82390 0.83552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.19 71.98 0.66 -3.88 16 2 C -0.11 -4.52 3.14 -10.80 -0.03 -4.55 16 3 C -0.11 -4.48 8.58 71.98 0.62 -3.86 16 4 C 0.16 7.51 4.65 86.38 0.40 7.91 16 5 N -0.58 -26.86 2.11 -682.20 -1.44 -28.30 16 6 C -0.23 -11.53 6.38 84.03 0.54 -11.00 16 7 H 0.07 3.21 5.13 -2.91 -0.01 3.19 16 8 C -0.03 -1.72 4.99 84.86 0.42 -1.30 16 9 N -0.92 -52.37 11.34 21.65 0.25 -52.12 16 10 Si 0.94 43.76 29.59 68.60 2.03 45.79 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 14 C 0.19 7.83 2.92 44.25 0.13 7.96 16 15 H 0.06 2.61 5.97 -2.39 -0.01 2.59 16 16 C -0.14 -5.36 8.75 71.98 0.63 -4.73 16 17 C -0.07 -2.63 4.98 -19.84 -0.10 -2.73 16 18 C -0.10 -3.57 7.82 22.26 0.17 -3.39 16 19 C -0.12 -3.27 10.05 22.27 0.22 -3.05 16 20 C -0.11 -2.67 10.05 22.27 0.22 -2.45 16 21 C -0.12 -3.07 9.83 22.29 0.22 -2.85 16 22 C -0.05 -1.46 6.31 22.32 0.14 -1.32 16 23 Cl -0.08 -2.39 25.62 -2.72 -0.07 -2.46 16 24 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 2.46 6.64 -2.39 -0.02 2.44 16 28 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.04 1.89 7.03 -2.38 -0.02 1.88 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 3.59 5.48 -2.39 -0.01 3.58 16 32 H 0.01 0.33 8.00 -2.38 -0.02 0.31 16 33 H 0.24 13.77 8.31 -92.71 -0.77 13.00 16 34 H 0.05 2.06 6.27 -2.39 -0.01 2.05 16 35 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.12 4.44 5.33 -2.91 -0.02 4.42 16 38 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 40 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -57.51 326.94 6.04 -51.48 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 1.02 Total: 14.83 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 4.25 Total: -29.22 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -1.19 Total: -80.42 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -0.07 Total: -2.46 kcal Total: -57.51 6.04 -51.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563523760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.221 kcal (2) G-P(sol) polarization free energy of solvation -57.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds