Wall clock time and date at job start Tue Mar 31 2020 05:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47615 * 2 1 4 4 H 1.09003 * 109.47300 * 177.62615 * 3 2 1 5 5 C 1.50705 * 109.46899 * 57.62531 * 3 2 1 6 6 H 1.07998 * 119.99960 * 239.99833 * 5 3 2 7 7 C 1.37875 * 119.99770 * 60.00049 * 5 3 2 8 8 N 1.31514 * 120.00367 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99899 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46926 * 60.00375 * 9 7 5 11 11 H 1.48502 * 109.47248 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47328 * 300.00584 * 9 7 5 13 13 N 1.46901 * 109.47072 * 297.62767 * 3 2 1 14 14 C 1.46894 * 110.99960 * 274.12871 * 13 3 2 15 15 C 1.52997 * 109.47076 * 184.28431 * 14 13 3 16 16 C 1.53007 * 109.47070 * 179.97438 * 15 14 13 17 17 C 1.50708 * 109.46734 * 179.97438 * 16 15 14 18 18 C 1.38235 * 120.00416 * 100.00434 * 17 16 15 19 19 C 1.38223 * 120.01010 * 179.97438 * 18 17 16 20 20 C 1.38259 * 120.02713 * 0.04016 * 19 18 17 21 21 C 1.38198 * 120.01300 * 359.97438 * 20 19 18 22 22 C 1.38328 * 120.00470 * 279.71794 * 17 16 15 23 23 Cl 1.73600 * 120.01529 * 359.97438 * 22 17 16 24 24 H 1.09001 * 109.47157 * 54.76991 * 1 2 3 25 25 H 1.08997 * 109.47384 * 174.78166 * 1 2 3 26 26 H 1.09011 * 109.46703 * 294.77419 * 1 2 3 27 27 H 1.09003 * 109.47231 * 239.99916 * 2 1 3 28 28 H 1.09007 * 109.47223 * 120.00460 * 2 1 3 29 29 H 0.97002 * 120.00226 * 180.02562 * 8 7 5 30 30 H 1.00902 * 110.99821 * 150.17125 * 13 3 2 31 31 H 1.09004 * 109.46837 * 304.28254 * 14 13 3 32 32 H 1.08997 * 109.47342 * 64.28007 * 14 13 3 33 33 H 1.09004 * 109.47143 * 299.99635 * 15 14 13 34 34 H 1.08998 * 109.47435 * 60.00145 * 15 14 13 35 35 H 1.08999 * 109.47054 * 299.99381 * 16 15 14 36 36 H 1.08994 * 109.47503 * 60.00080 * 16 15 14 37 37 H 1.07995 * 119.99447 * 359.97438 * 18 17 16 38 38 H 1.07998 * 119.98597 * 180.02562 * 19 18 17 39 39 H 1.08003 * 119.99801 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.00773 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1293 1.4427 0.0426 5 6 1.4903 2.1697 1.2000 6 1 0.8740 3.0462 1.0647 7 6 1.7741 1.7160 2.4707 8 7 2.5249 0.6489 2.6356 9 14 1.0932 2.6177 3.9582 10 1 -0.3907 2.6179 3.9004 11 1 1.5406 1.9349 5.1986 12 1 1.5887 4.0177 3.9580 13 7 1.5978 2.1182 -1.2271 14 6 2.5365 1.8737 -2.3302 15 6 2.1016 2.6772 -3.5575 16 6 3.0796 2.4229 -4.7063 17 6 2.6508 3.2140 -5.9153 18 6 3.2755 4.4099 -6.2161 19 6 2.8827 5.1352 -7.3252 20 6 1.8643 4.6656 -8.1339 21 6 1.2389 3.4703 -7.8340 22 6 1.6361 2.7405 -6.7275 23 17 0.8566 1.2348 -6.3549 24 1 -0.3633 0.5928 -0.8394 25 1 -0.3634 -1.0234 -0.0935 26 1 -0.3633 0.4307 0.9332 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.7242 0.3295 3.5295 30 1 1.4736 3.1073 -1.0705 31 1 3.5380 2.1821 -2.0302 32 1 2.5413 0.8114 -2.5745 33 1 1.1001 2.3688 -3.8575 34 1 2.0968 3.7395 -3.3133 35 1 4.0809 2.7317 -4.4061 36 1 3.0849 1.3608 -4.9508 37 1 4.0706 4.7775 -5.5844 38 1 3.3713 6.0693 -7.5601 39 1 1.5575 5.2330 -9.0002 40 1 0.4437 3.1034 -8.4660 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569707040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:53 Heat of formation + Delta-G solvation = -5.703107 kcal Electronic energy + Delta-G solvation = -19258.840014 eV Core-core repulsion = 16291.227480 eV Total energy + Delta-G solvation = -2967.612534 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.63552 -36.61260 -36.46793 -34.58682 -32.42068 -30.98027 -30.80315 -29.20308 -26.42448 -24.53017 -23.03949 -22.87803 -21.66686 -20.73574 -18.93543 -17.16366 -16.31675 -15.99143 -15.52857 -14.95049 -14.58601 -14.08954 -13.96279 -13.80743 -13.47264 -13.12488 -12.99485 -12.34394 -12.10645 -11.83602 -11.73805 -11.67467 -11.48585 -11.33947 -11.02054 -10.88837 -10.75793 -10.52082 -10.44740 -10.30361 -9.93407 -9.63810 -9.30229 -9.06012 -8.77551 -8.71212 -8.42995 -7.16276 -5.98401 -4.03580 0.98231 1.08051 2.09235 3.32531 3.37224 3.39922 3.43901 4.42384 4.53957 4.59483 4.75106 5.04452 5.11428 5.26134 5.32655 5.34167 5.39449 5.62511 5.73115 5.86825 5.91629 6.03642 6.08888 6.19660 6.23755 6.28702 6.57045 6.61366 6.63805 6.67340 6.77656 6.91440 7.29318 7.38196 7.56060 7.79149 7.83992 7.89948 8.31432 8.45619 8.73819 9.06317 9.60926 11.07650 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027379 B = 0.003358 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.425252 B = 8335.971972 C = 8861.534488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.686 5.686 14 C 0.063 3.937 15 C -0.110 4.110 16 C -0.085 4.085 17 C -0.063 4.063 18 C -0.108 4.108 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.035 4.035 23 Cl -0.062 7.062 24 H 0.046 0.954 25 H 0.011 0.989 26 H 0.051 0.949 27 H 0.009 0.991 28 H 0.084 0.916 29 H 0.261 0.739 30 H 0.329 0.671 31 H 0.017 0.983 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.712 5.888 -20.532 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 C 0.108 3.892 4 H 0.017 0.983 5 C -0.551 4.551 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.317 5.317 14 C -0.067 4.067 15 C -0.148 4.148 16 C -0.123 4.123 17 C -0.064 4.064 18 C -0.126 4.126 19 C -0.133 4.133 20 C -0.137 4.137 21 C -0.129 4.129 22 C -0.062 4.062 23 Cl -0.033 7.033 24 H 0.065 0.935 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.028 0.972 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.298 5.107 -20.513 21.142 hybrid contribution 0.339 0.877 1.118 1.461 sum 0.637 5.985 -19.395 20.307 Atomic orbital electron populations 1.21435 0.97544 0.97050 1.01556 1.21410 0.95074 0.98283 0.99180 1.19121 0.93216 0.91644 0.85197 0.98326 1.21169 1.31573 1.11923 0.90439 0.92405 1.24884 0.95127 0.95037 0.98815 1.69883 1.37527 1.23196 1.22243 0.86649 0.79488 0.79738 0.82052 1.20208 1.21373 1.20414 1.60679 1.47700 1.15799 1.07528 1.21884 0.93885 0.99378 0.91542 1.21562 0.99274 1.00184 0.93755 1.20697 0.99924 0.99790 0.91893 1.19913 0.94604 0.95616 0.96243 1.21090 1.00137 0.93907 0.97475 1.21235 0.97234 0.99892 0.94983 1.21070 0.96683 0.95841 1.00115 1.21055 1.00505 0.95066 0.96311 1.20892 0.97482 0.90207 0.97581 1.98389 1.79613 1.31080 1.94192 0.93460 0.96949 0.92976 0.97218 0.89799 0.92956 0.85448 0.96515 0.92015 0.90902 0.92437 0.90759 0.90247 0.85127 0.85584 0.85398 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 9.46 37.16 0.35 -2.40 16 2 C -0.10 -2.51 5.57 -26.73 -0.15 -2.66 16 3 C 0.22 5.44 2.31 -68.86 -0.16 5.29 16 4 H 0.00 -0.02 7.72 -51.93 -0.40 -0.42 16 5 C -0.51 -13.89 7.31 -34.44 -0.25 -14.14 16 6 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.41 11.34 55.43 0.63 -24.78 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.69 -14.62 5.58 -107.95 -0.60 -15.23 16 14 C 0.06 1.14 5.53 -3.83 -0.02 1.11 16 15 C -0.11 -1.61 5.37 -26.73 -0.14 -1.75 16 16 C -0.09 -1.05 4.80 -27.88 -0.13 -1.19 16 17 C -0.06 -0.73 5.14 -104.59 -0.54 -1.27 16 18 C -0.11 -1.08 9.67 -39.59 -0.38 -1.46 16 19 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 20 C -0.12 -1.01 10.05 -39.59 -0.40 -1.40 16 21 C -0.11 -1.08 9.83 -39.55 -0.39 -1.47 16 22 C -0.03 -0.41 6.31 -39.50 -0.25 -0.66 16 23 Cl -0.06 -0.76 26.66 -51.86 -1.38 -2.14 16 24 H 0.05 1.07 7.52 -51.93 -0.39 0.67 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.05 1.29 7.35 -51.92 -0.38 0.91 16 27 H 0.01 0.22 7.54 -51.93 -0.39 -0.18 16 28 H 0.08 2.30 6.14 -51.93 -0.32 1.98 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.33 6.87 8.15 -39.29 -0.32 6.55 16 31 H 0.02 0.31 7.95 -51.93 -0.41 -0.10 16 32 H 0.06 1.15 7.55 -51.93 -0.39 0.76 16 33 H 0.07 1.14 7.30 -51.93 -0.38 0.76 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.84 8.01 -51.93 -0.42 0.43 16 36 H 0.08 1.00 7.34 -51.93 -0.38 0.62 16 37 H 0.13 1.11 8.04 -52.49 -0.42 0.69 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -28.63 338.10 -10.49 -39.12 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.25 Total: 3.39 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -2.95 Total: -21.74 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.03 Total: -40.00 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.38 Total: -2.14 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.63 -10.49 -39.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569707040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.415 kcal (2) G-P(sol) polarization free energy of solvation -28.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds