Wall clock time and date at job start Tue Mar 31 2020 05:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47180 * 2 1 4 4 H 1.08995 * 109.47293 * 56.27423 * 3 2 1 5 5 C 1.53003 * 109.47327 * 176.28223 * 3 2 1 6 6 C 1.50694 * 109.47125 * 184.99768 * 5 3 2 7 7 C 1.38240 * 119.98869 * 269.72438 * 6 5 3 8 8 C 1.38219 * 120.01542 * 179.72665 * 7 6 5 9 9 C 1.38349 * 119.98360 * 0.54449 * 8 7 6 10 10 Cl 1.73601 * 120.00871 * 179.70554 * 9 8 7 11 11 C 1.38346 * 119.97621 * 359.72775 * 9 8 7 12 12 C 1.38220 * 119.98612 * 359.97438 * 11 9 8 13 13 N 1.46908 * 109.46495 * 296.27841 * 3 2 1 14 14 C 1.46896 * 110.99940 * 304.43983 * 13 3 2 15 15 C 1.53007 * 109.46816 * 185.21526 * 14 13 3 16 16 C 1.50698 * 109.46939 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00062 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00103 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99919 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00200 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47308 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47254 * 119.99908 * 20 18 16 23 23 H 1.48500 * 109.47057 * 239.99550 * 20 18 16 24 24 H 1.08997 * 109.47227 * 57.63165 * 1 2 3 25 25 H 1.09001 * 109.47071 * 177.63959 * 1 2 3 26 26 H 1.09001 * 109.47230 * 297.63415 * 1 2 3 27 27 H 1.08999 * 109.47638 * 239.99585 * 2 1 3 28 28 H 1.09002 * 109.47547 * 119.99355 * 2 1 3 29 29 H 1.09003 * 109.46493 * 304.99676 * 5 3 2 30 30 H 1.08995 * 109.47331 * 64.99153 * 5 3 2 31 31 H 1.08008 * 119.99057 * 0.02562 * 7 6 5 32 32 H 1.07998 * 120.00278 * 180.27349 * 8 7 6 33 33 H 1.07998 * 120.01215 * 179.97438 * 11 9 8 34 34 H 1.08006 * 119.99096 * 179.97438 * 12 11 9 35 35 H 1.00903 * 110.99207 * 180.48802 * 13 3 2 36 36 H 1.09004 * 109.46572 * 65.22210 * 14 13 3 37 37 H 1.08995 * 109.47515 * 305.22051 * 14 13 3 38 38 H 1.09000 * 109.47059 * 300.00435 * 15 14 13 39 39 H 1.08997 * 109.46767 * 60.00625 * 15 14 13 40 40 H 0.97004 * 120.00239 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6232 1.9753 0.8547 5 6 3.5672 1.4436 0.0935 6 6 4.0619 2.8616 0.2172 7 6 4.3671 3.5884 -0.9185 8 6 4.8155 4.8910 -0.8060 9 6 4.9696 5.4637 0.4440 10 17 5.5400 7.0971 0.5863 11 6 4.6693 4.7340 1.5804 12 6 4.2151 3.4335 1.4664 13 7 1.6250 2.1085 -1.2420 14 6 2.0808 1.3578 -2.4195 15 6 1.7450 2.1452 -3.6877 16 6 2.2120 1.3748 -4.8957 17 1 2.6999 0.4193 -4.7714 18 6 2.0173 1.8902 -6.1596 19 7 1.4236 3.0539 -6.3110 20 14 2.5969 0.9356 -7.6570 21 1 3.2300 -0.3345 -7.2198 22 1 1.4355 0.6346 -8.5321 23 1 3.5862 1.7480 -8.4095 24 1 -0.3633 0.5502 -0.8680 25 1 -0.3633 -1.0268 -0.0423 26 1 -0.3634 0.4767 0.9104 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.8779 0.8727 0.9686 30 1 3.9865 0.9894 -0.8042 31 1 4.2506 3.1399 -1.8941 32 1 5.0497 5.4601 -1.6935 33 1 4.7898 5.1803 2.5564 34 1 3.9811 2.8637 2.3535 35 1 1.9568 3.0610 -1.2696 36 1 1.5801 0.3900 -2.4494 37 1 3.1587 1.2075 -2.3598 38 1 0.6670 2.2954 -3.7473 39 1 2.2456 3.1130 -3.6576 40 1 1.2863 3.4163 -7.2002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595034946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:30 Heat of formation + Delta-G solvation = -8.554272 kcal Electronic energy + Delta-G solvation = -19721.180908 eV Core-core repulsion = 16753.444738 eV Total energy + Delta-G solvation = -2967.736170 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.74868 -37.63022 -36.39396 -33.56563 -32.12526 -31.81314 -31.02570 -29.06652 -27.32774 -24.44333 -23.60144 -22.85254 -21.27137 -21.09101 -19.19349 -17.09241 -16.38974 -15.82472 -15.55669 -15.32181 -14.54325 -14.35381 -13.92511 -13.79327 -13.43469 -13.34833 -13.18487 -12.91430 -12.23344 -12.21955 -11.91233 -11.68146 -11.32662 -11.29458 -11.20004 -11.00550 -10.90002 -10.79998 -10.60476 -10.50007 -10.22358 -9.93014 -9.36651 -9.13707 -9.05080 -8.61408 -8.36457 -7.72798 -6.00960 -4.03581 1.10639 1.26885 2.09395 3.29938 3.37828 3.41153 3.58838 4.42946 4.66270 4.73998 4.82446 4.85604 5.15135 5.25263 5.31004 5.35249 5.37972 5.44727 5.59377 5.65341 5.81570 5.84280 5.92884 6.04991 6.06255 6.17945 6.20783 6.27819 6.39635 6.43142 6.48187 6.62019 6.69432 6.81136 7.00471 7.51729 7.71861 7.84131 7.97234 8.07963 8.42595 9.04128 9.60664 11.10313 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012654 B = 0.004811 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.166371 B = 5818.659058 C = 7562.054389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.094 3.906 4 H 0.074 0.926 5 C -0.124 4.124 6 C -0.070 4.070 7 C -0.102 4.102 8 C -0.102 4.102 9 C -0.041 4.041 10 Cl -0.080 7.080 11 C -0.112 4.112 12 C -0.108 4.108 13 N -0.681 5.681 14 C 0.059 3.941 15 C 0.024 3.976 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.337 0.663 36 H 0.062 0.938 37 H 0.018 0.982 38 H 0.024 0.976 39 H 0.012 0.988 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.807 0.854 17.121 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.017 4.017 4 H 0.092 0.908 5 C -0.163 4.163 6 C -0.070 4.070 7 C -0.121 4.121 8 C -0.120 4.120 9 C -0.068 4.068 10 Cl -0.051 7.051 11 C -0.131 4.131 12 C -0.127 4.127 13 N -0.312 5.312 14 C -0.069 4.069 15 C -0.013 4.013 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.156 0.844 36 H 0.081 0.919 37 H 0.036 0.964 38 H 0.042 0.958 39 H 0.030 0.970 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.158 0.838 16.992 17.778 hybrid contribution 1.380 -0.008 -0.920 1.659 sum 6.538 0.831 16.073 17.372 Atomic orbital electron populations 1.21645 0.95182 1.00658 1.02566 1.21603 0.96966 0.95375 1.01572 1.21610 0.90114 0.95694 0.94289 0.90754 1.21497 0.99060 0.92277 1.03481 1.20014 0.97514 0.96594 0.92923 1.21303 0.97771 0.93558 0.99421 1.21124 0.99223 0.95580 0.96110 1.20909 1.04047 0.86562 0.95253 1.98358 1.87714 1.20660 1.98370 1.20969 1.00232 0.94449 0.97402 1.20965 0.99873 0.94465 0.97348 1.60774 1.63339 1.05802 1.01277 1.22261 0.96178 0.98183 0.90279 1.19086 0.97682 0.94805 0.89756 1.21194 1.38380 1.05179 0.91115 0.92775 1.24989 0.95273 0.94975 0.99028 1.69981 1.42759 1.17831 1.22583 0.86577 0.78472 0.80086 0.83103 1.19781 1.20993 1.21066 0.90842 0.93806 0.93601 0.91360 0.92614 0.90843 0.89940 0.84315 0.84795 0.85310 0.85391 0.84412 0.91919 0.96382 0.95786 0.97006 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.82 37.16 0.36 -1.50 16 2 C -0.12 -1.50 5.04 -26.73 -0.13 -1.63 16 3 C 0.09 1.25 2.57 -67.70 -0.17 1.08 16 4 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 5 C -0.12 -1.51 4.72 -27.88 -0.13 -1.65 16 6 C -0.07 -0.88 4.72 -104.62 -0.49 -1.37 16 7 C -0.10 -1.43 8.28 -39.59 -0.33 -1.75 16 8 C -0.10 -1.36 9.83 -39.55 -0.39 -1.75 16 9 C -0.04 -0.51 6.32 -39.50 -0.25 -0.76 16 10 Cl -0.08 -0.93 28.96 -51.86 -1.50 -2.43 16 11 C -0.11 -1.24 9.83 -39.55 -0.39 -1.63 16 12 C -0.11 -1.19 9.70 -39.59 -0.38 -1.58 16 13 N -0.68 -11.40 5.80 -106.72 -0.62 -12.02 16 14 C 0.06 1.16 4.64 -3.82 -0.02 1.14 16 15 C 0.02 0.61 5.18 -27.88 -0.14 0.46 16 16 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 17 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 20 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.07 1.14 7.65 -51.93 -0.40 0.75 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.96 6.24 -51.93 -0.32 0.64 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 30 H 0.08 1.13 6.12 -51.93 -0.32 0.81 16 31 H 0.14 2.15 7.44 -52.48 -0.39 1.76 16 32 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.34 5.77 6.75 -39.29 -0.27 5.51 16 36 H 0.06 1.26 6.46 -51.93 -0.34 0.92 16 37 H 0.02 0.35 5.61 -51.93 -0.29 0.06 16 38 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -28.79 337.54 -10.29 -39.08 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.09 Total: 3.76 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -2.88 Total: -24.05 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.12 Total: -37.85 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.79 -10.29 -39.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595034946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.524 kcal (2) G-P(sol) polarization free energy of solvation -28.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds