Wall clock time and date at job start Tue Mar 31 2020 05:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47180 * 2 1 4 4 H 1.08995 * 109.47293 * 56.27423 * 3 2 1 5 5 C 1.53003 * 109.47327 * 176.28223 * 3 2 1 6 6 C 1.50694 * 109.47125 * 184.99768 * 5 3 2 7 7 C 1.38240 * 119.98869 * 269.72438 * 6 5 3 8 8 C 1.38219 * 120.01542 * 179.72665 * 7 6 5 9 9 C 1.38349 * 119.98360 * 0.54449 * 8 7 6 10 10 Cl 1.73601 * 120.00871 * 179.70554 * 9 8 7 11 11 C 1.38346 * 119.97621 * 359.72775 * 9 8 7 12 12 C 1.38220 * 119.98612 * 359.97438 * 11 9 8 13 13 N 1.46908 * 109.46495 * 296.27841 * 3 2 1 14 14 C 1.46896 * 110.99940 * 304.43983 * 13 3 2 15 15 C 1.53007 * 109.46816 * 185.21526 * 14 13 3 16 16 C 1.50698 * 109.46939 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00062 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00103 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99919 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00200 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47308 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47254 * 119.99908 * 20 18 16 23 23 H 1.48500 * 109.47057 * 239.99550 * 20 18 16 24 24 H 1.08997 * 109.47227 * 57.63165 * 1 2 3 25 25 H 1.09001 * 109.47071 * 177.63959 * 1 2 3 26 26 H 1.09001 * 109.47230 * 297.63415 * 1 2 3 27 27 H 1.08999 * 109.47638 * 239.99585 * 2 1 3 28 28 H 1.09002 * 109.47547 * 119.99355 * 2 1 3 29 29 H 1.09003 * 109.46493 * 304.99676 * 5 3 2 30 30 H 1.08995 * 109.47331 * 64.99153 * 5 3 2 31 31 H 1.08008 * 119.99057 * 0.02562 * 7 6 5 32 32 H 1.07998 * 120.00278 * 180.27349 * 8 7 6 33 33 H 1.07998 * 120.01215 * 179.97438 * 11 9 8 34 34 H 1.08006 * 119.99096 * 179.97438 * 12 11 9 35 35 H 1.00903 * 110.99207 * 180.48802 * 13 3 2 36 36 H 1.09004 * 109.46572 * 65.22210 * 14 13 3 37 37 H 1.08995 * 109.47515 * 305.22051 * 14 13 3 38 38 H 1.09000 * 109.47059 * 300.00435 * 15 14 13 39 39 H 1.08997 * 109.46767 * 60.00625 * 15 14 13 40 40 H 0.97004 * 120.00239 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6232 1.9753 0.8547 5 6 3.5672 1.4436 0.0935 6 6 4.0619 2.8616 0.2172 7 6 4.3671 3.5884 -0.9185 8 6 4.8155 4.8910 -0.8060 9 6 4.9696 5.4637 0.4440 10 17 5.5400 7.0971 0.5863 11 6 4.6693 4.7340 1.5804 12 6 4.2151 3.4335 1.4664 13 7 1.6250 2.1085 -1.2420 14 6 2.0808 1.3578 -2.4195 15 6 1.7450 2.1452 -3.6877 16 6 2.2120 1.3748 -4.8957 17 1 2.6999 0.4193 -4.7714 18 6 2.0173 1.8902 -6.1596 19 7 1.4236 3.0539 -6.3110 20 14 2.5969 0.9356 -7.6570 21 1 3.2300 -0.3345 -7.2198 22 1 1.4355 0.6346 -8.5321 23 1 3.5862 1.7480 -8.4095 24 1 -0.3633 0.5502 -0.8680 25 1 -0.3633 -1.0268 -0.0423 26 1 -0.3634 0.4767 0.9104 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.8779 0.8727 0.9686 30 1 3.9865 0.9894 -0.8042 31 1 4.2506 3.1399 -1.8941 32 1 5.0497 5.4601 -1.6935 33 1 4.7898 5.1803 2.5564 34 1 3.9811 2.8637 2.3535 35 1 1.9568 3.0610 -1.2696 36 1 1.5801 0.3900 -2.4494 37 1 3.1587 1.2075 -2.3598 38 1 0.6670 2.2954 -3.7473 39 1 2.2456 3.1130 -3.6576 40 1 1.2863 3.4163 -7.2002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595034946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:28 Heat of formation + Delta-G solvation = -23.421816 kcal Electronic energy + Delta-G solvation = -19721.825613 eV Core-core repulsion = 16753.444738 eV Total energy + Delta-G solvation = -2968.380875 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.75653 -38.78987 -37.36839 -35.49611 -33.46752 -33.09924 -32.00143 -30.64416 -28.58546 -26.22329 -24.72130 -23.81570 -22.96716 -22.15296 -20.42962 -18.47109 -18.04897 -17.19675 -16.66411 -16.39997 -16.25696 -15.67073 -15.10276 -15.05308 -14.54909 -14.41948 -14.30904 -14.24888 -13.95124 -13.45270 -13.19554 -12.92740 -12.88144 -12.73426 -12.41628 -12.36085 -12.28278 -11.99447 -11.83730 -11.73387 -11.51155 -11.46802 -11.24309 -11.11045 -10.55992 -10.02021 -9.62272 -9.05632 -8.19470 -6.30311 0.14088 0.31393 1.14648 1.39433 1.39947 1.52770 2.40405 2.62427 3.14392 3.48928 3.71606 3.80839 3.93893 4.12953 4.27954 4.29497 4.38010 4.42562 4.56825 4.62362 4.66768 4.70901 4.82928 4.88544 5.00676 5.02518 5.13946 5.16916 5.21736 5.25587 5.29050 5.46192 5.48027 5.61083 5.62606 5.72195 5.83714 5.86388 6.19230 6.39085 6.60783 6.87982 7.39178 8.92707 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012654 B = 0.004811 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.166371 B = 5818.659058 C = 7562.054389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.095 3.905 4 H 0.090 0.910 5 C -0.116 4.116 6 C -0.075 4.075 7 C -0.120 4.120 8 C -0.118 4.118 9 C -0.049 4.049 10 Cl -0.075 7.075 11 C -0.107 4.107 12 C -0.099 4.099 13 N -0.687 5.687 14 C 0.084 3.916 15 C 0.032 3.968 16 C -0.538 4.538 17 H 0.060 0.940 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.279 1.279 24 H 0.040 0.960 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.155 0.845 34 H 0.162 0.838 35 H 0.333 0.667 36 H 0.060 0.940 37 H 0.023 0.977 38 H -0.011 1.011 39 H -0.012 1.012 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.567 -0.451 19.309 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.015 4.015 4 H 0.108 0.892 5 C -0.155 4.155 6 C -0.075 4.075 7 C -0.138 4.138 8 C -0.137 4.137 9 C -0.075 4.075 10 Cl -0.047 7.047 11 C -0.126 4.126 12 C -0.117 4.117 13 N -0.318 5.318 14 C -0.044 4.044 15 C -0.005 4.005 16 C -0.576 4.576 17 H 0.078 0.922 18 C -0.196 4.196 19 N -0.572 5.572 20 Si 0.786 3.214 21 H -0.185 1.185 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.145 0.855 33 H 0.173 0.827 34 H 0.180 0.820 35 H 0.152 0.848 36 H 0.078 0.922 37 H 0.041 0.959 38 H 0.007 0.993 39 H 0.006 0.994 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.923 -0.477 19.198 20.096 hybrid contribution 1.125 0.455 -1.535 1.956 sum 7.048 -0.023 17.663 19.017 Atomic orbital electron populations 1.21610 0.95547 1.00961 1.01730 1.21621 0.96605 0.94859 1.02262 1.21728 0.91193 0.95977 0.92609 0.89169 1.21413 0.97744 0.92346 1.04002 1.20097 0.97634 0.96706 0.93113 1.21151 0.99501 0.94160 0.99027 1.21125 1.00177 0.95620 0.96731 1.21026 1.04219 0.86975 0.95313 1.98357 1.87662 1.20328 1.98320 1.21315 0.98893 0.94422 0.97937 1.21299 0.98358 0.94462 0.97579 1.60701 1.63688 1.05594 1.01812 1.21796 0.96322 0.97113 0.89213 1.18925 0.94883 0.94370 0.92335 1.21620 1.38244 1.05539 0.92240 0.92217 1.25926 0.95279 0.95908 1.02465 1.70118 1.44028 1.19596 1.23477 0.85448 0.78071 0.78960 0.78874 1.18466 1.20479 1.20503 0.94128 0.92776 0.92141 0.93102 0.89412 0.87703 0.91826 0.87062 0.85509 0.82712 0.82038 0.84841 0.92207 0.95892 0.99275 0.99406 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.82 71.98 0.71 -2.75 16 2 C -0.12 -2.69 5.04 30.59 0.15 -2.54 16 3 C 0.09 2.35 2.57 44.92 0.12 2.47 16 4 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 5 C -0.12 -2.58 4.72 29.85 0.14 -2.44 16 6 C -0.08 -1.77 4.72 -19.86 -0.09 -1.87 16 7 C -0.12 -3.44 8.28 22.27 0.18 -3.26 16 8 C -0.12 -3.24 9.83 22.29 0.22 -3.02 16 9 C -0.05 -1.17 6.32 22.32 0.14 -1.03 16 10 Cl -0.08 -1.69 28.96 -2.72 -0.08 -1.77 16 11 C -0.11 -2.09 9.83 22.29 0.22 -1.87 16 12 C -0.10 -1.85 9.70 22.27 0.22 -1.63 16 13 N -0.69 -23.30 5.80 -491.54 -2.85 -26.15 16 14 C 0.08 3.41 4.64 86.31 0.40 3.81 16 15 C 0.03 1.71 5.18 29.85 0.15 1.87 16 16 C -0.54 -30.54 9.11 25.60 0.23 -30.31 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 18 C 0.00 0.12 5.46 84.65 0.46 0.58 16 19 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 20 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H 0.04 1.25 7.65 -2.39 -0.02 1.24 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.37 6.24 -2.39 -0.01 1.35 16 28 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.10 1.70 8.09 -2.39 -0.02 1.68 16 30 H 0.06 1.68 6.12 -2.39 -0.01 1.66 16 31 H 0.11 3.75 7.44 -2.91 -0.02 3.73 16 32 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 35 H 0.33 11.79 6.75 -89.69 -0.61 11.18 16 36 H 0.06 2.45 6.46 -2.38 -0.02 2.44 16 37 H 0.02 0.91 5.61 -2.39 -0.01 0.90 16 38 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 40 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -64.09 337.54 3.05 -61.04 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.42 Total: 19.38 kcal Atomic # 6 Polarization: -45.24 SS G_CDS: 3.25 Total: -41.99 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -2.57 Total: -83.10 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -64.09 3.05 -61.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595034946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.617 kcal (2) G-P(sol) polarization free energy of solvation -64.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds