Wall clock time and date at job start Tue Mar 31 2020 05:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47005 * 2 1 4 4 N 1.46904 * 109.46913 * 120.00051 * 2 1 3 5 5 C 1.46895 * 110.99558 * 275.00011 * 4 2 1 6 6 C 1.52997 * 109.47089 * 179.97438 * 5 4 2 7 7 H 1.08994 * 109.47261 * 305.00046 * 6 5 4 8 8 C 1.53004 * 109.47177 * 64.99439 * 6 5 4 9 9 C 1.53000 * 109.47576 * 184.99627 * 6 5 4 10 10 C 1.50699 * 109.47215 * 174.99795 * 9 6 5 11 11 H 1.07994 * 120.00261 * 0.02562 * 10 9 6 12 12 C 1.37884 * 119.99847 * 179.97438 * 10 9 6 13 13 N 1.31513 * 119.99813 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99976 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47023 * 60.00215 * 14 12 10 16 16 H 1.48499 * 109.47173 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47353 * 300.00439 * 14 12 10 18 18 C 1.50700 * 109.46882 * 239.99685 * 2 1 3 19 19 C 1.38236 * 120.00725 * 264.97777 * 18 2 1 20 20 C 1.38224 * 120.01528 * 180.02562 * 19 18 2 21 21 C 1.38264 * 120.02372 * 0.02562 * 20 19 18 22 22 C 1.38199 * 120.01177 * 359.67909 * 21 20 19 23 23 C 1.38335 * 120.00592 * 85.00720 * 18 2 1 24 24 Cl 1.73599 * 120.01202 * 359.97295 * 23 18 2 25 25 H 1.09000 * 109.47043 * 300.00524 * 1 2 3 26 26 H 1.09010 * 109.46745 * 60.00183 * 1 2 3 27 27 H 1.08991 * 109.47289 * 179.97438 * 1 2 3 28 28 H 1.00890 * 110.99748 * 151.04320 * 4 2 1 29 29 H 1.08997 * 109.47417 * 299.99719 * 5 4 2 30 30 H 1.09000 * 109.47848 * 60.00133 * 5 4 2 31 31 H 1.08998 * 109.47306 * 179.97438 * 8 6 5 32 32 H 1.08997 * 109.47363 * 300.00766 * 8 6 5 33 33 H 1.09001 * 109.46838 * 60.00392 * 8 6 5 34 34 H 1.09004 * 109.47242 * 295.00162 * 9 6 5 35 35 H 1.09002 * 109.47151 * 55.00062 * 9 6 5 36 36 H 0.97007 * 119.99362 * 179.97438 * 13 12 10 37 37 H 1.08004 * 119.99173 * 0.05193 * 19 18 2 38 38 H 1.07991 * 119.98575 * 180.02562 * 20 19 18 39 39 H 1.07997 * 119.99322 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.00335 * 180.30335 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3468 6 6 2.5949 -0.5331 3.5745 7 1 1.9690 -1.4079 3.7501 8 6 4.0384 -0.9791 3.3329 9 6 2.5427 0.3851 4.7972 10 6 2.9304 -0.3941 6.0275 11 1 3.1886 -1.4395 5.9455 12 6 2.9564 0.2280 7.2577 13 7 2.6423 1.5012 7.3575 14 14 3.4376 -0.7377 8.7826 15 1 4.8155 -1.2669 8.6190 16 1 3.3868 0.1535 9.9694 17 1 2.4927 -1.8675 8.9718 18 6 2.0323 -0.7105 -1.2304 19 6 2.3615 -2.0516 -1.1684 20 6 2.8228 -2.7033 -2.2967 21 6 2.9556 -2.0141 -3.4879 22 6 2.6210 -0.6748 -3.5527 23 6 2.1646 -0.0205 -2.4221 24 17 1.7514 1.6637 -2.5008 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 2.9172 -1.1205 1.0288 29 1 2.7588 1.0461 2.1182 30 1 1.0871 0.6164 2.5525 31 1 4.4037 -1.5171 4.2077 32 1 4.0757 -1.6332 2.4618 33 1 4.6644 -0.1042 3.1574 34 1 3.2364 1.2144 4.6588 35 1 1.5313 0.7736 4.9170 36 1 2.6603 1.9387 8.2232 37 1 2.2580 -2.5905 -0.2381 38 1 3.0794 -3.7512 -2.2478 39 1 3.3164 -2.5237 -4.3691 40 1 2.7202 -0.1379 -4.4845 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602504331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:38 Heat of formation + Delta-G solvation = -4.397186 kcal Electronic energy + Delta-G solvation = -19402.479978 eV Core-core repulsion = 16434.924074 eV Total energy + Delta-G solvation = -2967.555905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.87734 -37.18295 -36.59931 -34.78189 -32.42087 -30.97167 -30.66003 -28.94353 -26.77361 -25.53180 -23.67161 -22.96168 -22.04454 -20.36198 -19.02756 -17.41716 -16.37734 -16.08479 -15.72417 -15.06608 -14.56815 -14.33560 -14.06316 -13.94379 -13.81203 -13.10601 -12.86983 -12.51188 -12.31600 -12.02839 -11.86643 -11.70399 -11.62224 -11.58261 -11.39104 -11.15640 -10.86853 -10.77531 -10.55860 -10.33196 -10.17748 -9.70209 -9.17279 -9.08703 -8.96846 -8.84088 -8.31103 -8.18820 -5.95887 -3.97097 0.93489 1.05704 1.96590 3.35540 3.39966 3.41438 3.42348 4.24505 4.47104 4.50443 4.68250 4.78595 5.07122 5.16254 5.30722 5.39544 5.40190 5.49844 5.70978 5.75831 5.81813 5.86330 5.93832 6.02616 6.05815 6.16403 6.21512 6.30805 6.31682 6.48933 6.57766 6.60050 6.95787 7.11661 7.18483 7.36045 7.62369 7.71639 7.87881 8.04377 8.48016 9.09079 9.66130 11.15609 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029502 B = 0.003287 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.847148 B = 8515.891616 C = 9069.195821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.117 3.883 3 H 0.059 0.941 4 N -0.684 5.684 5 C 0.064 3.936 6 C -0.083 4.083 7 H 0.066 0.934 8 C -0.134 4.134 9 C 0.028 3.972 10 C -0.513 4.513 11 H 0.056 0.944 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.890 3.110 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.073 4.073 19 C -0.096 4.096 20 C -0.115 4.115 21 C -0.115 4.115 22 C -0.113 4.113 23 C -0.033 4.033 24 Cl -0.069 7.069 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.339 0.661 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.040 0.960 34 H 0.014 0.986 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.144 0.856 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 -5.024 -23.007 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.077 0.923 4 N -0.317 5.317 5 C -0.065 4.065 6 C -0.102 4.102 7 H 0.084 0.916 8 C -0.191 4.191 9 C -0.009 4.009 10 C -0.552 4.552 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.074 4.074 19 C -0.114 4.114 20 C -0.133 4.133 21 C -0.133 4.133 22 C -0.132 4.132 23 C -0.060 4.060 24 Cl -0.040 7.040 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.159 0.841 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.032 0.968 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.162 0.838 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.499 -4.959 -22.707 23.291 hybrid contribution 1.030 0.297 0.621 1.239 sum -0.469 -4.662 -22.086 22.577 Atomic orbital electron populations 1.21731 0.93198 1.02483 1.01593 1.20497 0.96445 0.95700 0.86608 0.92330 1.60770 1.33358 1.33818 1.03732 1.22201 1.00506 0.93444 0.90309 1.21216 0.95295 0.99465 0.94248 0.91589 1.21744 0.97381 0.99920 1.00098 1.19102 0.97052 0.94193 0.90570 1.21201 1.45402 0.96477 0.92095 0.92621 1.25021 0.95611 0.94878 0.99027 1.69960 1.49129 1.10021 1.24557 0.86692 0.79056 0.79857 0.82586 1.20318 1.21394 1.20272 1.19969 0.98869 0.94475 0.94111 1.21184 0.97461 0.93196 0.99539 1.21306 0.98916 1.00360 0.92741 1.21108 1.00123 0.93686 0.98398 1.21007 0.99886 0.95019 0.97246 1.20836 1.04061 0.85792 0.95352 1.98369 1.92100 1.15104 1.98437 0.91814 0.92737 0.91942 0.84081 0.95710 0.91268 0.91840 0.95058 0.94036 0.96775 0.96654 0.93052 0.83792 0.85353 0.85322 0.85143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.40 37.16 0.35 -1.30 16 2 C 0.12 1.53 2.34 -68.86 -0.16 1.37 16 3 H 0.06 0.82 6.78 -51.93 -0.35 0.47 16 4 N -0.68 -9.92 5.56 -107.95 -0.60 -10.52 16 5 C 0.06 1.11 4.94 -3.83 -0.02 1.09 16 6 C -0.08 -1.69 2.55 -90.62 -0.23 -1.92 16 7 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 8 C -0.13 -2.49 8.78 37.16 0.33 -2.16 16 9 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 10 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 11 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 14 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C -0.07 -0.86 4.93 -104.59 -0.52 -1.38 16 19 C -0.10 -1.02 8.86 -39.59 -0.35 -1.37 16 20 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 21 C -0.11 -0.95 10.05 -39.59 -0.40 -1.35 16 22 C -0.11 -1.05 9.83 -39.55 -0.39 -1.44 16 23 C -0.03 -0.37 6.31 -39.50 -0.25 -0.62 16 24 Cl -0.07 -0.77 27.16 -51.86 -1.41 -2.17 16 25 H 0.06 0.83 7.45 -51.93 -0.39 0.45 16 26 H 0.05 0.62 7.90 -51.92 -0.41 0.21 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.34 4.70 5.52 -39.30 -0.22 4.48 16 29 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 30 H 0.07 1.24 7.44 -51.93 -0.39 0.85 16 31 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 32 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.14 1.52 6.97 -52.48 -0.37 1.16 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -29.66 337.20 -9.89 -39.55 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.13 Total: 0.75 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -2.55 Total: -23.06 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.14 Total: -36.87 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.41 Total: -2.17 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.66 -9.89 -39.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602504331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.153 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds