Wall clock time and date at job start Tue Mar 31 2020 05:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46831 * 2 1 4 4 N 1.46894 * 109.47143 * 120.00054 * 2 1 3 5 5 C 1.46894 * 111.00442 * 275.00163 * 4 2 1 6 6 C 1.52996 * 109.47462 * 180.02562 * 5 4 2 7 7 H 1.09007 * 109.47111 * 305.00337 * 6 5 4 8 8 C 1.53002 * 109.47099 * 64.99716 * 6 5 4 9 9 C 1.52996 * 109.47367 * 185.00168 * 6 5 4 10 10 C 1.50701 * 109.47340 * 175.00171 * 9 6 5 11 11 H 1.08000 * 119.99884 * 359.97438 * 10 9 6 12 12 C 1.37873 * 120.00020 * 180.02562 * 10 9 6 13 13 N 1.31519 * 120.00082 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00044 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46993 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47164 * 119.99881 * 14 12 10 17 17 H 1.48502 * 109.46852 * 239.99866 * 14 12 10 18 18 C 1.50696 * 109.46922 * 240.00289 * 2 1 3 19 19 C 1.38247 * 119.98658 * 100.00234 * 18 2 1 20 20 C 1.38216 * 120.01497 * 179.97438 * 19 18 2 21 21 C 1.38357 * 119.98603 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.01134 * 180.02562 * 21 20 19 23 23 C 1.38347 * 119.97107 * 0.28224 * 21 20 19 24 24 C 1.38219 * 119.98930 * 359.40143 * 23 21 20 25 25 H 1.09001 * 109.47280 * 59.99804 * 1 2 3 26 26 H 1.09008 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47157 * 299.99499 * 1 2 3 28 28 H 1.00901 * 110.99771 * 151.04688 * 4 2 1 29 29 H 1.08996 * 109.47182 * 300.00166 * 5 4 2 30 30 H 1.08998 * 109.47006 * 59.99666 * 5 4 2 31 31 H 1.09000 * 109.47094 * 179.97438 * 8 6 5 32 32 H 1.08995 * 109.47454 * 300.00183 * 8 6 5 33 33 H 1.09007 * 109.46632 * 60.00328 * 8 6 5 34 34 H 1.09004 * 109.47243 * 294.99934 * 9 6 5 35 35 H 1.09000 * 109.47202 * 54.99977 * 9 6 5 36 36 H 0.97004 * 119.99642 * 179.97438 * 13 12 10 37 37 H 1.08003 * 119.99321 * 359.97438 * 19 18 2 38 38 H 1.08002 * 120.00776 * 180.02562 * 20 19 18 39 39 H 1.08000 * 120.00661 * 179.71600 * 23 21 20 40 40 H 1.07997 * 119.99445 * 180.32231 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5962 -0.5330 3.5741 7 1 1.9710 -1.4085 3.7499 8 6 4.0399 -0.9779 3.3316 9 6 2.5439 0.3850 4.7969 10 6 2.9330 -0.3941 6.0269 11 1 3.1913 -1.4395 5.9447 12 6 2.9582 0.2276 7.2573 13 7 2.6431 1.5005 7.3575 14 14 3.4397 -0.7382 8.7820 15 1 3.7456 -2.1412 8.4032 16 1 4.6391 -0.1195 9.4016 17 1 2.3167 -0.7219 9.7535 18 6 2.0323 -0.7103 -1.2305 19 6 2.4587 0.0199 -2.3242 20 6 2.9200 -0.6310 -3.4529 21 6 2.9544 -2.0137 -3.4882 22 17 3.5343 -2.8319 -4.9052 23 6 2.5216 -2.7440 -2.3958 24 6 2.0667 -2.0919 -1.2652 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 2.9173 -1.1205 1.0286 29 1 2.7588 1.0461 2.1183 30 1 1.0871 0.6162 2.5525 31 1 4.4061 -1.5157 4.2061 32 1 4.0772 -1.6319 2.4605 33 1 4.6652 -0.1024 3.1558 34 1 3.2369 1.2148 4.6582 35 1 1.5323 0.7726 4.9173 36 1 2.6605 1.9377 8.2233 37 1 2.4313 1.0992 -2.2967 38 1 3.2534 -0.0604 -4.3071 39 1 2.5440 -3.8234 -2.4244 40 1 1.7337 -2.6618 -0.4104 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602505020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:46 Heat of formation + Delta-G solvation = -8.249980 kcal Electronic energy + Delta-G solvation = -19097.909674 eV Core-core repulsion = 16130.186700 eV Total energy + Delta-G solvation = -2967.722975 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.85662 -37.39780 -36.54848 -34.68565 -32.40955 -31.32159 -30.54423 -28.88275 -26.79224 -25.53801 -23.59640 -23.10224 -22.10942 -20.38774 -19.03488 -17.41736 -16.45293 -16.07149 -15.77655 -14.96683 -14.61146 -14.25463 -14.16048 -13.84375 -13.69052 -13.30806 -13.04886 -12.57120 -12.54523 -12.09672 -11.88704 -11.85907 -11.56961 -11.46793 -11.33684 -11.04392 -10.94141 -10.86696 -10.69015 -10.33280 -10.19230 -9.72916 -9.26657 -9.17714 -8.97493 -8.77326 -8.33579 -8.22305 -5.98079 -3.99101 0.89078 1.06865 1.88610 3.31911 3.38775 3.39652 3.43614 4.25799 4.48362 4.54428 4.60567 4.66616 5.11376 5.14093 5.30253 5.35152 5.37979 5.48894 5.69910 5.73205 5.75263 5.80360 5.88279 5.99136 6.02387 6.06225 6.22139 6.26768 6.33051 6.47707 6.55576 6.57949 6.93596 7.10102 7.16271 7.33452 7.60398 7.69682 7.85324 8.02286 8.46075 9.07531 9.64460 11.13479 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034358 B = 0.002763 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.744364 B =10132.382676 C =10578.316505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.120 3.880 3 H 0.052 0.948 4 N -0.683 5.683 5 C 0.064 3.936 6 C -0.083 4.083 7 H 0.066 0.934 8 C -0.134 4.134 9 C 0.027 3.973 10 C -0.512 4.512 11 H 0.057 0.943 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.889 3.111 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.079 4.079 19 C -0.103 4.103 20 C -0.112 4.112 21 C -0.039 4.039 22 Cl -0.078 7.078 23 C -0.112 4.112 24 C -0.087 4.087 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.340 0.660 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.040 0.960 34 H 0.014 0.986 35 H 0.015 0.985 36 H 0.259 0.741 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 -4.814 -22.862 23.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.010 3.990 3 H 0.069 0.931 4 N -0.316 5.316 5 C -0.064 4.064 6 C -0.102 4.102 7 H 0.084 0.916 8 C -0.192 4.192 9 C -0.010 4.010 10 C -0.550 4.550 11 H 0.075 0.925 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.717 3.283 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.079 4.079 19 C -0.122 4.122 20 C -0.131 4.131 21 C -0.065 4.065 22 Cl -0.049 7.049 23 C -0.130 4.130 24 C -0.106 4.106 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.160 0.840 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.032 0.968 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.572 -4.991 -22.688 23.284 hybrid contribution 1.129 0.100 0.532 1.252 sum -0.443 -4.890 -22.156 22.694 Atomic orbital electron populations 1.21778 0.93473 1.02598 1.01387 1.20481 0.96252 0.95323 0.86946 0.93053 1.60736 1.33527 1.33711 1.03631 1.22201 1.00426 0.93435 0.90372 1.21214 0.95316 0.99459 0.94236 0.91603 1.21744 0.97342 0.99913 1.00156 1.19115 0.97045 0.94212 0.90633 1.21272 1.45110 0.96553 0.92055 0.92513 1.25025 0.95624 0.94885 0.99063 1.69979 1.49305 1.10057 1.24349 0.86579 0.78095 0.80263 0.83326 1.19742 1.21132 1.21087 1.20194 0.97866 0.94129 0.95736 1.21042 0.98515 1.00194 0.92448 1.20994 1.00729 0.92252 0.99127 1.20955 1.03230 0.92858 0.89482 1.98365 1.87432 1.79344 1.39791 1.21111 0.99318 1.00445 0.92152 1.21130 0.97779 0.94021 0.97659 0.92881 0.91860 0.91904 0.84005 0.95750 0.91301 0.91841 0.95007 0.94057 0.96775 0.96655 0.93162 0.85187 0.85107 0.84960 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 9.39 37.16 0.35 -1.14 16 2 C 0.12 1.39 2.82 -68.87 -0.19 1.20 16 3 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 4 N -0.68 -9.36 5.69 -107.96 -0.61 -9.98 16 5 C 0.06 1.06 4.94 -3.83 -0.02 1.04 16 6 C -0.08 -1.66 2.54 -90.62 -0.23 -1.89 16 7 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 8 C -0.13 -2.46 8.78 37.16 0.33 -2.13 16 9 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 10 C -0.51 -14.20 8.41 -34.44 -0.29 -14.49 16 11 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 12 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 14 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 C -0.08 -0.83 4.71 -104.62 -0.49 -1.32 16 19 C -0.10 -0.98 9.67 -39.59 -0.38 -1.36 16 20 C -0.11 -1.04 9.83 -39.55 -0.39 -1.42 16 21 C -0.04 -0.38 6.32 -39.50 -0.25 -0.63 16 22 Cl -0.08 -0.72 28.96 -51.86 -1.50 -2.22 16 23 C -0.11 -1.08 9.83 -39.55 -0.39 -1.47 16 24 C -0.09 -0.90 9.01 -39.59 -0.36 -1.26 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 28 H 0.34 4.57 6.24 -39.29 -0.25 4.32 16 29 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 30 H 0.07 1.18 7.44 -51.93 -0.39 0.79 16 31 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 32 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.13 1.02 8.04 -52.48 -0.42 0.60 16 38 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.14 1.46 7.72 -52.49 -0.40 1.05 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -29.09 341.50 -10.05 -39.14 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.26 Total: 0.30 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -2.54 Total: -22.84 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.12 Total: -36.12 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.09 -10.05 -39.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602505020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.887 kcal (2) G-P(sol) polarization free energy of solvation -29.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds