Wall clock time and date at job start Tue Mar 31 2020 05:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46831 * 2 1 4 4 N 1.46894 * 109.47143 * 120.00054 * 2 1 3 5 5 C 1.46894 * 111.00442 * 275.00163 * 4 2 1 6 6 C 1.52996 * 109.47462 * 180.02562 * 5 4 2 7 7 H 1.09007 * 109.47111 * 305.00337 * 6 5 4 8 8 C 1.53002 * 109.47099 * 64.99716 * 6 5 4 9 9 C 1.52996 * 109.47367 * 185.00168 * 6 5 4 10 10 C 1.50701 * 109.47340 * 175.00171 * 9 6 5 11 11 H 1.08000 * 119.99884 * 359.97438 * 10 9 6 12 12 C 1.37873 * 120.00020 * 180.02562 * 10 9 6 13 13 N 1.31519 * 120.00082 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00044 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46993 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47164 * 119.99881 * 14 12 10 17 17 H 1.48502 * 109.46852 * 239.99866 * 14 12 10 18 18 C 1.50696 * 109.46922 * 240.00289 * 2 1 3 19 19 C 1.38247 * 119.98658 * 100.00234 * 18 2 1 20 20 C 1.38216 * 120.01497 * 179.97438 * 19 18 2 21 21 C 1.38357 * 119.98603 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.01134 * 180.02562 * 21 20 19 23 23 C 1.38347 * 119.97107 * 0.28224 * 21 20 19 24 24 C 1.38219 * 119.98930 * 359.40143 * 23 21 20 25 25 H 1.09001 * 109.47280 * 59.99804 * 1 2 3 26 26 H 1.09008 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47157 * 299.99499 * 1 2 3 28 28 H 1.00901 * 110.99771 * 151.04688 * 4 2 1 29 29 H 1.08996 * 109.47182 * 300.00166 * 5 4 2 30 30 H 1.08998 * 109.47006 * 59.99666 * 5 4 2 31 31 H 1.09000 * 109.47094 * 179.97438 * 8 6 5 32 32 H 1.08995 * 109.47454 * 300.00183 * 8 6 5 33 33 H 1.09007 * 109.46632 * 60.00328 * 8 6 5 34 34 H 1.09004 * 109.47243 * 294.99934 * 9 6 5 35 35 H 1.09000 * 109.47202 * 54.99977 * 9 6 5 36 36 H 0.97004 * 119.99642 * 179.97438 * 13 12 10 37 37 H 1.08003 * 119.99321 * 359.97438 * 19 18 2 38 38 H 1.08002 * 120.00776 * 180.02562 * 20 19 18 39 39 H 1.08000 * 120.00661 * 179.71600 * 23 21 20 40 40 H 1.07997 * 119.99445 * 180.32231 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5962 -0.5330 3.5741 7 1 1.9710 -1.4085 3.7499 8 6 4.0399 -0.9779 3.3316 9 6 2.5439 0.3850 4.7969 10 6 2.9330 -0.3941 6.0269 11 1 3.1913 -1.4395 5.9447 12 6 2.9582 0.2276 7.2573 13 7 2.6431 1.5005 7.3575 14 14 3.4397 -0.7382 8.7820 15 1 3.7456 -2.1412 8.4032 16 1 4.6391 -0.1195 9.4016 17 1 2.3167 -0.7219 9.7535 18 6 2.0323 -0.7103 -1.2305 19 6 2.4587 0.0199 -2.3242 20 6 2.9200 -0.6310 -3.4529 21 6 2.9544 -2.0137 -3.4882 22 17 3.5343 -2.8319 -4.9052 23 6 2.5216 -2.7440 -2.3958 24 6 2.0667 -2.0919 -1.2652 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 2.9173 -1.1205 1.0286 29 1 2.7588 1.0461 2.1183 30 1 1.0871 0.6162 2.5525 31 1 4.4061 -1.5157 4.2061 32 1 4.0772 -1.6319 2.4605 33 1 4.6652 -0.1024 3.1558 34 1 3.2369 1.2148 4.6582 35 1 1.5323 0.7726 4.9173 36 1 2.6605 1.9377 8.2233 37 1 2.4313 1.0992 -2.2967 38 1 3.2534 -0.0604 -4.3071 39 1 2.5440 -3.8234 -2.4244 40 1 1.7337 -2.6618 -0.4104 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602505020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:45 Heat of formation + Delta-G solvation = -22.919454 kcal Electronic energy + Delta-G solvation = -19098.545790 eV Core-core repulsion = 16130.186700 eV Total energy + Delta-G solvation = -2968.359091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65139 -38.54733 -37.44513 -36.09848 -34.30787 -32.08174 -31.71887 -29.85304 -28.64034 -26.97647 -24.88809 -24.07361 -23.35392 -21.30482 -20.64711 -18.56864 -18.14289 -17.08097 -16.75075 -16.53298 -15.95836 -15.39262 -15.20027 -15.00661 -14.51139 -14.40034 -14.32730 -14.11238 -13.63511 -13.58268 -13.26691 -13.00971 -12.79500 -12.66057 -12.60029 -12.42822 -12.23413 -12.18845 -11.85155 -11.82863 -11.73663 -11.44552 -11.04505 -10.90757 -10.52821 -9.98746 -9.55986 -9.36646 -8.16624 -6.25272 0.13194 0.34675 1.16266 1.40379 1.41164 1.53892 2.42768 2.63706 3.17088 3.20745 3.67220 3.87314 3.98392 4.19648 4.26381 4.29693 4.41454 4.47683 4.53704 4.54806 4.73682 4.76646 4.82272 4.93136 4.98358 5.04712 5.06538 5.24338 5.26447 5.28264 5.36837 5.41278 5.50395 5.53601 5.59716 5.82302 5.83993 5.91399 6.12731 6.32999 6.50139 6.91204 7.43022 8.95618 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034358 B = 0.002763 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.744364 B =10132.382676 C =10578.316505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.122 3.878 3 H 0.053 0.947 4 N -0.680 5.680 5 C 0.078 3.922 6 C -0.074 4.074 7 H 0.058 0.942 8 C -0.127 4.127 9 C 0.032 3.968 10 C -0.526 4.526 11 H 0.061 0.939 12 C -0.003 4.003 13 N -0.936 5.936 14 Si 0.960 3.040 15 H -0.262 1.262 16 H -0.280 1.280 17 H -0.280 1.280 18 C -0.087 4.087 19 C -0.104 4.104 20 C -0.113 4.113 21 C -0.047 4.047 22 Cl -0.075 7.075 23 C -0.115 4.115 24 C -0.093 4.093 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.344 0.656 29 H 0.023 0.977 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.039 0.961 34 H -0.011 1.011 35 H -0.013 1.013 36 H 0.261 0.739 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.476 -5.847 -24.046 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.013 3.987 3 H 0.071 0.929 4 N -0.313 5.313 5 C -0.051 4.051 6 C -0.093 4.093 7 H 0.076 0.924 8 C -0.184 4.184 9 C -0.005 4.005 10 C -0.564 4.564 11 H 0.079 0.921 12 C -0.200 4.200 13 N -0.577 5.577 14 Si 0.785 3.215 15 H -0.186 1.186 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.087 4.087 19 C -0.122 4.122 20 C -0.132 4.132 21 C -0.073 4.073 22 Cl -0.046 7.046 23 C -0.134 4.134 24 C -0.112 4.112 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.164 0.836 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.008 0.992 35 H 0.006 0.994 36 H 0.070 0.930 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.058 -6.038 -23.892 24.666 hybrid contribution 0.952 0.432 0.825 1.332 sum -0.106 -5.607 -23.066 23.738 Atomic orbital electron populations 1.21757 0.93138 1.02473 1.01606 1.20479 0.96473 0.95320 0.86468 0.92903 1.60650 1.33772 1.33137 1.03723 1.21877 0.99639 0.93308 0.90273 1.21000 0.96697 0.98131 0.93469 0.92366 1.21650 0.95732 1.00222 1.00792 1.19012 0.94471 0.94264 0.92797 1.21674 1.44673 0.96931 0.93142 0.92107 1.25943 0.95624 0.95871 1.02589 1.70109 1.50501 1.11789 1.25287 0.85473 0.77796 0.79172 0.79079 1.18554 1.20596 1.20619 1.20104 0.98788 0.94257 0.95583 1.21225 0.97907 1.01056 0.92061 1.21218 1.00185 0.92208 0.99575 1.21117 1.03255 0.93299 0.89663 1.98368 1.87371 1.79320 1.39543 1.21250 0.99045 1.01154 0.91925 1.21144 0.98116 0.94006 0.97902 0.91182 0.92144 0.93158 0.83568 0.95892 0.92143 0.93666 0.91602 0.94216 0.99242 0.99433 0.92989 0.83606 0.83424 0.83822 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.39 71.98 0.68 -2.09 16 2 C 0.12 2.65 2.82 44.17 0.12 2.78 16 3 H 0.05 1.16 7.66 -2.39 -0.02 1.14 16 4 N -0.68 -17.80 5.69 -495.49 -2.82 -20.62 16 5 C 0.08 2.58 4.94 86.30 0.43 3.00 16 6 C -0.07 -2.95 2.54 -10.80 -0.03 -2.98 16 7 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 8 C -0.13 -4.52 8.78 71.98 0.63 -3.89 16 9 C 0.03 1.67 4.45 29.85 0.13 1.81 16 10 C -0.53 -29.61 8.41 25.60 0.22 -29.40 16 11 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 12 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 13 N -0.94 -57.18 13.29 21.45 0.28 -56.89 16 14 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 15 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 C -0.09 -1.67 4.71 -19.86 -0.09 -1.76 16 19 C -0.10 -1.73 9.67 22.27 0.22 -1.52 16 20 C -0.11 -1.82 9.83 22.29 0.22 -1.61 16 21 C -0.05 -0.82 6.32 22.32 0.14 -0.68 16 22 Cl -0.07 -1.25 28.96 -2.72 -0.08 -1.33 16 23 C -0.12 -2.02 9.83 22.29 0.22 -1.80 16 24 C -0.09 -1.76 9.01 22.27 0.20 -1.56 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.05 1.17 7.45 -2.39 -0.02 1.15 16 28 H 0.34 8.58 6.24 -89.69 -0.56 8.02 16 29 H 0.02 0.76 8.05 -2.39 -0.02 0.74 16 30 H 0.06 2.09 7.44 -2.39 -0.02 2.08 16 31 H 0.04 1.76 6.95 -2.39 -0.02 1.75 16 32 H 0.07 1.89 6.68 -2.39 -0.02 1.88 16 33 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 34 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 35 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 36 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.15 1.91 8.04 -2.91 -0.02 1.89 16 38 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.14 2.68 7.72 -2.91 -0.02 2.65 16 Total: -1.00 -62.43 341.50 3.41 -59.02 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.46 Total: 12.74 kcal Atomic # 6 Polarization: -42.96 SS G_CDS: 3.54 Total: -39.42 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -2.54 Total: -77.51 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -62.43 3.41 -59.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602505020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.100 kcal (2) G-P(sol) polarization free energy of solvation -62.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds