Wall clock time and date at job start Tue Mar 31 2020 05:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47527 * 2 1 4 4 C 1.53003 * 109.47423 * 240.00090 * 2 1 3 5 5 C 1.50703 * 109.47125 * 64.99909 * 4 2 1 6 6 H 1.07999 * 119.99683 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00337 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99542 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00195 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47106 * 89.99846 * 9 7 5 11 11 H 1.48506 * 109.47065 * 209.99510 * 9 7 5 12 12 H 1.48493 * 109.47183 * 329.99721 * 9 7 5 13 13 C 1.52997 * 109.47079 * 120.00334 * 2 1 3 14 14 N 1.46900 * 109.47220 * 294.99805 * 13 2 1 15 15 C 1.46894 * 111.00559 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47515 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 C 1.38241 * 119.98648 * 269.72716 * 17 16 15 19 19 C 1.38215 * 120.00743 * 179.72780 * 18 17 16 20 20 C 1.38349 * 119.98879 * 0.54512 * 19 18 17 21 21 Cl 1.73606 * 120.01120 * 179.70588 * 20 19 18 22 22 C 1.38346 * 119.97570 * 359.73013 * 20 19 18 23 23 C 1.38215 * 119.98756 * 359.97438 * 22 20 19 24 24 H 1.09000 * 109.47033 * 59.99907 * 1 2 3 25 25 H 1.09007 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47507 * 300.00027 * 1 2 3 27 27 H 1.08998 * 109.47666 * 185.00015 * 4 2 1 28 28 H 1.09001 * 109.46990 * 305.00497 * 4 2 1 29 29 H 0.97011 * 120.00008 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.46989 * 175.00023 * 13 2 1 31 31 H 1.09005 * 109.47424 * 54.99799 * 13 2 1 32 32 H 1.00905 * 110.99607 * 303.95664 * 14 13 2 33 33 H 1.09002 * 109.47104 * 59.99767 * 15 14 13 34 34 H 1.08998 * 109.46828 * 300.00600 * 15 14 13 35 35 H 1.09002 * 109.47153 * 59.99762 * 16 15 14 36 36 H 1.09001 * 109.46832 * 299.99953 * 16 15 14 37 37 H 1.07995 * 119.99451 * 359.97438 * 18 17 16 38 38 H 1.07999 * 120.00426 * 180.27387 * 19 18 17 39 39 H 1.08006 * 120.01050 * 179.97438 * 22 20 19 40 40 H 1.07995 * 119.99616 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9924 -0.4021 -3.7284 8 7 2.6756 -1.5192 -3.8512 9 14 1.4988 0.5630 -5.2496 10 1 2.5648 1.5418 -5.5823 11 1 1.3112 -0.3708 -6.3890 12 1 0.2282 1.2852 -4.9870 13 6 2.0399 -0.7213 1.2492 14 7 1.6513 0.0373 2.4456 15 6 2.1257 -0.6266 3.6671 16 6 1.7023 0.1908 4.8892 17 6 2.1884 -0.4907 6.1423 18 6 1.3860 -1.4185 6.7799 19 6 1.8337 -2.0479 7.9261 20 6 3.0803 -1.7410 8.4416 21 17 3.6401 -2.5256 9.8855 22 6 3.8805 -0.8083 7.8062 23 6 3.4344 -0.1839 6.6567 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.1263 -0.7995 -1.2056 28 1 1.6053 -1.7198 -1.2952 29 1 2.9230 -1.8421 -4.7319 30 1 3.1262 -0.7995 1.2055 31 1 1.6053 -1.7199 1.2951 32 1 1.9881 0.9872 2.3966 33 1 3.2126 -0.7038 3.6400 34 1 1.6920 -1.6246 3.7299 35 1 0.6153 0.2676 4.9161 36 1 2.1356 1.1890 4.8265 37 1 0.4109 -1.6544 6.3802 38 1 1.2086 -2.7759 8.4217 39 1 4.8537 -0.5680 8.2084 40 1 4.0587 0.5445 6.1608 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602506379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:26 Heat of formation + Delta-G solvation = -29.218076 kcal Electronic energy + Delta-G solvation = -18443.310422 eV Core-core repulsion = 15474.678202 eV Total energy + Delta-G solvation = -2968.632219 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.42211 -38.44894 -37.50185 -36.06262 -34.38842 -32.85988 -32.01291 -29.44046 -28.45432 -26.48261 -24.60895 -23.79788 -23.33896 -21.94762 -20.67370 -18.48616 -18.03658 -16.99212 -16.64220 -16.34830 -16.27942 -15.65983 -15.46222 -14.89807 -14.52370 -14.47597 -14.37984 -14.13329 -13.91176 -13.42711 -13.25310 -12.88538 -12.78277 -12.67191 -12.53498 -12.26885 -12.18962 -12.16013 -11.96360 -11.85613 -11.71414 -11.45501 -11.07471 -10.89223 -10.52661 -10.00064 -9.52415 -9.31570 -8.16731 -6.25811 0.14564 0.33672 1.16012 1.41009 1.42024 1.53139 2.42766 2.62467 3.16657 3.25558 3.81047 3.95625 4.03293 4.10235 4.19755 4.33972 4.36993 4.41660 4.50439 4.56324 4.64603 4.79572 4.90845 4.93357 4.94707 5.04432 5.09116 5.19351 5.26875 5.27657 5.31148 5.48680 5.53245 5.57762 5.63632 5.82881 5.85968 5.90102 6.07346 6.32189 6.54339 6.90528 7.42440 8.95319 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.048193 B = 0.002156 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.861529 B =12983.999390 C =13164.557778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 H 0.056 0.944 4 C 0.031 3.969 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.262 1.262 13 C 0.077 3.923 14 N -0.684 5.684 15 C 0.067 3.933 16 C -0.070 4.070 17 C -0.079 4.079 18 C -0.108 4.108 19 C -0.116 4.116 20 C -0.053 4.053 21 Cl -0.078 7.078 22 C -0.116 4.116 23 C -0.109 4.109 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.069 0.931 27 H -0.015 1.015 28 H -0.011 1.011 29 H 0.261 0.739 30 H 0.016 0.984 31 H 0.059 0.941 32 H 0.345 0.655 33 H 0.026 0.974 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.439 2.354 26.510 26.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.007 4.007 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.187 1.187 13 C -0.052 4.052 14 N -0.315 5.315 15 C -0.062 4.062 16 C -0.107 4.107 17 C -0.080 4.080 18 C -0.126 4.126 19 C -0.134 4.134 20 C -0.080 4.080 21 Cl -0.049 7.049 22 C -0.135 4.135 23 C -0.128 4.128 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.004 0.996 28 H 0.007 0.993 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.164 0.836 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.950 1.887 26.556 26.640 hybrid contribution 1.145 0.016 -0.972 1.502 sum 0.195 1.904 25.584 25.656 Atomic orbital electron populations 1.21491 0.94638 1.00334 1.00615 1.21015 0.96762 0.98488 0.93048 0.92563 1.19033 0.94063 0.94706 0.92897 1.21650 1.34326 1.08541 0.92024 0.91961 1.25983 0.95354 0.96133 1.02752 1.70110 1.40393 1.22968 1.24250 0.85487 0.79038 0.78335 0.78448 1.19897 1.21049 1.18663 1.21833 0.96457 0.97339 0.89576 1.60458 1.64057 1.06022 1.00995 1.21905 0.97161 0.98245 0.88932 1.20507 1.02552 0.98475 0.89181 1.20107 0.94484 0.96798 0.96608 1.21291 1.00837 0.95783 0.94690 1.21263 0.94606 1.00715 0.96839 1.21117 0.96429 0.99117 0.91296 1.98367 1.89475 1.79904 1.37135 1.21255 1.00416 0.95880 0.95924 1.21281 0.95882 1.00159 0.95434 0.94427 0.94772 0.91173 0.99645 0.99296 0.92988 0.96535 0.92251 0.83646 0.95590 0.91675 0.89458 0.89722 0.83670 0.83804 0.83836 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.25 8.89 71.98 0.64 -3.61 16 2 C -0.07 -2.98 2.48 -10.80 -0.03 -3.00 16 3 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.03 1.61 4.45 29.85 0.13 1.74 16 5 C -0.53 -29.77 8.41 25.60 0.22 -29.55 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 8 N -0.94 -57.48 13.29 21.45 0.28 -57.20 16 9 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 13 C 0.08 2.58 5.07 86.30 0.44 3.02 16 14 N -0.68 -17.50 5.96 -513.90 -3.06 -20.56 16 15 C 0.07 1.40 5.67 86.30 0.49 1.89 16 16 C -0.07 -1.10 5.61 29.85 0.17 -0.94 16 17 C -0.08 -1.27 5.13 -19.86 -0.10 -1.37 16 18 C -0.11 -1.67 9.70 22.27 0.22 -1.46 16 19 C -0.12 -1.82 9.83 22.29 0.22 -1.60 16 20 C -0.05 -0.89 6.32 22.32 0.14 -0.75 16 21 Cl -0.08 -1.26 28.96 -2.72 -0.08 -1.34 16 22 C -0.12 -1.82 9.83 22.29 0.22 -1.60 16 23 C -0.11 -1.67 9.70 22.27 0.22 -1.45 16 24 H 0.04 1.51 6.95 -2.39 -0.02 1.49 16 25 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.07 2.23 7.75 -2.39 -0.02 2.21 16 27 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 28 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 29 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 30 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.35 8.02 8.73 -89.69 -0.78 7.23 16 33 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.36 8.08 -2.39 -0.02 1.35 16 36 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 37 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -63.83 347.94 2.82 -61.01 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.22 Total: 10.11 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 3.43 Total: -38.52 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -2.78 Total: -77.76 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -63.83 2.82 -61.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.790 kcal (2) G-P(sol) polarization free energy of solvation -63.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds